Wall clock time and date at job start Tue Mar 31 2020 00:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32994 * 119.99808 * 2 1 4 4 C 1.50698 * 119.99787 * 180.02562 * 3 2 1 5 5 C 1.47106 * 120.00242 * 0.02562 * 3 2 1 6 6 O 1.21611 * 119.99491 * 334.16133 * 5 3 2 7 7 N 1.34769 * 119.99803 * 154.15800 * 5 3 2 8 8 C 1.46893 * 120.46939 * 173.86015 * 7 5 3 9 9 C 1.53336 * 108.76059 * 124.42933 * 8 7 5 10 10 C 1.52676 * 109.11457 * 52.41295 * 9 8 7 11 11 C 1.53509 * 113.56847 * 73.84114 * 10 9 8 12 12 N 1.47660 * 85.98007 * 91.00764 * 11 10 9 13 13 C 1.36945 * 134.45793 * 204.29076 * 12 11 10 14 14 H 1.07995 * 119.99590 * 356.65332 * 13 12 11 15 15 C 1.38812 * 120.00033 * 176.65370 * 13 12 11 16 16 N 1.31621 * 119.99833 * 7.24716 * 15 13 12 17 17 Si 1.86800 * 119.99997 * 187.24501 * 15 13 12 18 18 H 1.48500 * 109.47085 * 94.97765 * 17 15 13 19 19 H 1.48497 * 109.47041 * 214.98028 * 17 15 13 20 20 H 1.48504 * 109.47078 * 334.97982 * 17 15 13 21 21 C 1.47664 * 91.08578 * 24.31359 * 12 11 10 22 22 C 1.52669 * 113.18676 * 302.42450 * 10 9 8 23 23 C 1.46880 * 120.47513 * 353.83600 * 7 5 3 24 24 H 1.09010 * 109.46985 * 299.99545 * 1 2 3 25 25 H 1.09000 * 109.47134 * 59.99233 * 1 2 3 26 26 H 1.08998 * 109.47009 * 180.02562 * 1 2 3 27 27 H 1.07992 * 119.99912 * 180.02562 * 2 1 3 28 28 H 1.09009 * 109.46571 * 277.11558 * 4 3 2 29 29 H 1.08992 * 109.47688 * 37.11170 * 4 3 2 30 30 H 1.09002 * 109.47585 * 157.12156 * 4 3 2 31 31 H 1.08997 * 109.59060 * 4.64214 * 8 7 5 32 32 H 1.09005 * 109.58950 * 244.21042 * 8 7 5 33 33 H 1.09002 * 109.52857 * 292.52674 * 9 8 7 34 34 H 1.08994 * 109.52917 * 172.30432 * 9 8 7 35 35 H 1.09003 * 113.78585 * 205.27022 * 11 10 9 36 36 H 1.08997 * 113.79305 * 336.73803 * 11 10 9 37 37 H 0.97000 * 119.99335 * 179.97438 * 16 15 13 38 38 H 1.09003 * 113.78771 * 221.41119 * 21 12 11 39 39 H 1.09000 * 113.79280 * 89.95374 * 21 12 11 40 40 H 1.08999 * 109.52807 * 177.47030 * 22 10 9 41 41 H 1.08997 * 109.52750 * 297.68028 * 22 10 9 42 42 H 1.08999 * 109.58795 * 355.34888 * 23 7 5 43 43 H 1.09001 * 109.58992 * 115.78592 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6790 1.1518 -0.0006 5 6 1.4365 2.4258 0.0006 6 8 0.3114 2.4784 -0.4580 7 7 2.0095 3.5344 0.5093 8 6 1.3415 4.8377 0.3949 9 6 1.1874 5.4377 1.7975 10 6 2.5463 5.4374 2.4935 11 6 3.5104 6.5052 1.9579 12 7 2.9540 7.3843 3.0058 13 6 2.8473 8.7405 3.1629 14 1 3.2752 9.4047 2.4266 15 6 2.1891 9.2615 4.2684 16 7 1.7931 8.4617 5.2358 17 14 1.8655 11.0977 4.3832 18 1 0.5017 11.3926 3.8751 19 1 1.9706 11.5312 5.7996 20 1 2.8670 11.8288 3.5661 21 6 2.5594 6.2150 3.8166 22 6 3.1696 4.0475 2.5945 23 6 3.3105 3.4567 1.1867 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 2.0470 -0.9352 -0.0004 28 1 4.0426 1.0242 1.0191 29 1 4.0421 0.3325 -0.6209 30 1 4.0422 2.0987 -0.4000 31 1 0.3581 4.7059 -0.0564 32 1 1.9434 5.5037 -0.2234 33 1 0.4824 4.8391 2.3744 34 1 0.8190 6.4604 1.7178 35 1 4.5625 6.2599 2.1028 36 1 3.2841 6.8328 0.9433 37 1 1.3335 8.8259 6.0085 38 1 1.5772 6.3122 4.2794 39 1 3.3288 5.8835 4.5139 40 1 4.1531 4.1221 3.0586 41 1 2.5290 3.4039 3.1974 42 1 3.6241 2.4152 1.2571 43 1 4.0501 4.0260 0.6238 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035683727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:17 Heat of formation + Delta-G solvation = 51.253645 kcal Electronic energy + Delta-G solvation = -22631.026965 eV Core-core repulsion = 19486.038332 eV Total energy + Delta-G solvation = -3144.988633 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.50892 -38.82206 -35.85070 -35.30838 -32.51930 -31.38768 -30.53674 -29.59986 -26.99673 -25.40617 -24.91341 -23.70542 -23.09917 -21.77000 -20.68837 -18.82077 -17.28084 -16.69145 -16.24863 -15.46415 -15.35284 -14.85621 -14.60783 -14.45427 -14.16239 -13.74221 -13.57724 -13.44616 -13.12841 -12.80283 -12.60940 -12.33358 -12.10977 -12.02120 -11.76227 -11.68337 -11.34298 -11.06140 -10.93542 -10.84296 -10.78166 -10.30402 -10.08728 -9.67594 -9.60492 -9.41139 -9.30924 -9.07423 -8.70733 -8.31148 -6.83876 -5.74612 -3.04886 1.37231 3.11052 3.29710 3.40510 3.45537 3.47471 4.47649 4.50982 4.70037 4.89406 5.07798 5.09478 5.21129 5.27141 5.31967 5.40978 5.41527 5.49236 5.53754 5.64899 5.72732 5.73420 5.76792 5.91706 5.94387 5.98763 6.03703 6.25083 6.29831 6.34148 6.36387 6.46158 6.50499 6.67025 6.69902 6.85419 6.93328 7.26357 7.42599 7.59992 7.61405 8.01824 8.30886 9.07924 9.74363 10.65221 11.42817 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.037165 B = 0.003996 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.216322 B = 7005.149546 C = 7235.658299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.079 4.079 3 C -0.191 4.191 4 C -0.117 4.117 5 C 0.551 3.449 6 O -0.547 6.547 7 N -0.598 5.598 8 C 0.113 3.887 9 C -0.095 4.095 10 C -0.108 4.108 11 C 0.127 3.873 12 N -0.609 5.609 13 C -0.222 4.222 14 H 0.078 0.922 15 C -0.007 4.007 16 N -0.920 5.920 17 Si 0.908 3.092 18 H -0.289 1.289 19 H -0.292 1.292 20 H -0.281 1.281 21 C 0.172 3.828 22 C -0.119 4.119 23 C 0.078 3.922 24 H 0.069 0.931 25 H 0.090 0.910 26 H 0.053 0.947 27 H 0.122 0.878 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.030 0.970 36 H 0.040 0.960 37 H 0.253 0.747 38 H 0.070 0.930 39 H 0.024 0.976 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.109 0.891 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.078 -16.952 -9.313 19.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.098 4.098 3 C -0.194 4.194 4 C -0.173 4.173 5 C 0.341 3.659 6 O -0.427 6.427 7 N -0.330 5.330 8 C -0.009 4.009 9 C -0.133 4.133 10 C -0.109 4.109 11 C 0.001 3.999 12 N -0.335 5.335 13 C -0.350 4.350 14 H 0.096 0.904 15 C -0.203 4.203 16 N -0.567 5.567 17 Si 0.739 3.261 18 H -0.216 1.216 19 H -0.218 1.218 20 H -0.207 1.207 21 C 0.047 3.953 22 C -0.158 4.158 23 C -0.043 4.043 24 H 0.088 0.912 25 H 0.108 0.892 26 H 0.072 0.928 27 H 0.140 0.860 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.048 0.952 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.088 0.912 39 H 0.042 0.958 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.126 0.874 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.402 -16.569 -9.388 19.195 hybrid contribution 0.139 1.167 0.393 1.239 sum 2.541 -15.402 -8.996 18.017 Atomic orbital electron populations 1.21033 0.92024 1.01294 1.04249 1.23498 0.97060 0.96528 0.92754 1.21474 0.96373 0.93382 1.08158 1.21125 0.91171 1.03183 1.01867 1.18459 0.85617 0.83852 0.77933 1.90732 1.18640 1.85447 1.47847 1.48005 1.21392 1.07767 1.55881 1.21690 0.98356 0.82634 0.98234 1.21467 0.96137 1.01794 0.93925 1.22364 0.95535 0.92438 1.00607 1.22578 0.94585 0.89280 0.93481 1.46003 1.67834 1.00653 1.18990 1.19026 1.29948 0.80133 1.05906 0.90432 1.24753 1.01272 0.97759 0.96531 1.69839 1.44401 1.33385 1.09092 0.86155 0.78181 0.84895 0.76865 1.21591 1.21812 1.20692 1.22244 0.99390 0.83365 0.90292 1.21839 1.01295 0.97019 0.95629 1.22709 0.84414 1.03668 0.93556 0.91198 0.89178 0.92808 0.86032 0.90253 0.91670 0.90749 0.89464 0.91572 0.92232 0.89608 0.95240 0.94199 0.93742 0.91196 0.95806 0.90830 0.91943 0.87365 0.91494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.39 8.54 36.01 0.31 -1.08 16 2 C -0.08 -0.77 9.97 -36.12 -0.36 -1.13 16 3 C -0.19 -2.10 5.63 -102.85 -0.58 -2.67 16 4 C -0.12 -0.92 7.97 36.00 0.29 -0.64 16 5 C 0.55 7.96 7.22 -12.67 -0.09 7.87 16 6 O -0.55 -9.40 13.22 5.27 0.07 -9.33 16 7 N -0.60 -8.38 2.94 -174.05 -0.51 -8.89 16 8 C 0.11 1.74 6.30 -3.65 -0.02 1.71 16 9 C -0.10 -1.67 5.21 -26.72 -0.14 -1.81 16 10 C -0.11 -1.95 0.77 -154.43 -0.12 -2.07 16 11 C 0.13 2.52 7.72 -3.15 -0.02 2.49 16 12 N -0.61 -15.40 3.53 -179.79 -0.64 -16.04 16 13 C -0.22 -6.24 10.69 -15.06 -0.16 -6.40 16 14 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 15 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 16 N -0.92 -27.37 11.43 55.49 0.63 -26.73 16 17 Si 0.91 22.27 29.56 -169.99 -5.02 17.25 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 19 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C 0.17 4.00 6.65 -3.16 -0.02 3.98 16 22 C -0.12 -1.68 5.26 -26.73 -0.14 -1.82 16 23 C 0.08 0.93 4.63 -3.66 -0.02 0.91 16 24 H 0.07 0.85 7.93 -51.92 -0.41 0.44 16 25 H 0.09 1.13 6.73 -51.93 -0.35 0.78 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 28 H 0.08 0.53 6.78 -51.92 -0.35 0.17 16 29 H 0.06 0.41 8.12 -51.93 -0.42 -0.01 16 30 H 0.07 0.61 6.36 -51.93 -0.33 0.28 16 31 H 0.09 1.40 6.97 -51.93 -0.36 1.04 16 32 H 0.07 0.99 7.50 -51.93 -0.39 0.60 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.09 1.72 8.01 -51.93 -0.42 1.31 16 35 H 0.03 0.57 8.07 -51.93 -0.42 0.15 16 36 H 0.04 0.77 7.41 -51.93 -0.38 0.38 16 37 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.07 1.82 7.14 -51.93 -0.37 1.45 16 39 H 0.02 0.57 8.09 -51.93 -0.42 0.15 16 40 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.11 1.03 3.02 -53.69 -0.16 0.86 16 43 H 0.07 0.76 8.02 -51.93 -0.42 0.34 16 LS Contribution 330.99 15.07 4.99 4.99 Total: -1.00 -32.24 330.99 -8.52 -40.76 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -6.86 Total: -1.06 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -1.18 Total: -0.94 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: -0.51 Total: -51.66 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.07 Total: -9.33 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.24 -8.52 -40.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035683727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.011 kcal (2) G-P(sol) polarization free energy of solvation -32.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds