Wall clock time and date at job start Tue Mar 31 2020 00:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32994 * 119.99808 * 2 1 4 4 C 1.50698 * 119.99787 * 180.02562 * 3 2 1 5 5 C 1.47106 * 120.00242 * 0.02562 * 3 2 1 6 6 O 1.21611 * 119.99491 * 334.16133 * 5 3 2 7 7 N 1.34769 * 119.99803 * 154.15800 * 5 3 2 8 8 C 1.46893 * 120.46939 * 173.86015 * 7 5 3 9 9 C 1.53336 * 108.76059 * 124.42933 * 8 7 5 10 10 C 1.52676 * 109.11457 * 52.41295 * 9 8 7 11 11 C 1.53509 * 113.56847 * 73.84114 * 10 9 8 12 12 N 1.47660 * 85.98007 * 91.00764 * 11 10 9 13 13 C 1.36945 * 134.45793 * 204.29076 * 12 11 10 14 14 H 1.07995 * 119.99590 * 356.65332 * 13 12 11 15 15 C 1.38812 * 120.00033 * 176.65370 * 13 12 11 16 16 N 1.31621 * 119.99833 * 7.24716 * 15 13 12 17 17 Si 1.86800 * 119.99997 * 187.24501 * 15 13 12 18 18 H 1.48500 * 109.47085 * 94.97765 * 17 15 13 19 19 H 1.48497 * 109.47041 * 214.98028 * 17 15 13 20 20 H 1.48504 * 109.47078 * 334.97982 * 17 15 13 21 21 C 1.47664 * 91.08578 * 24.31359 * 12 11 10 22 22 C 1.52669 * 113.18676 * 302.42450 * 10 9 8 23 23 C 1.46880 * 120.47513 * 353.83600 * 7 5 3 24 24 H 1.09010 * 109.46985 * 299.99545 * 1 2 3 25 25 H 1.09000 * 109.47134 * 59.99233 * 1 2 3 26 26 H 1.08998 * 109.47009 * 180.02562 * 1 2 3 27 27 H 1.07992 * 119.99912 * 180.02562 * 2 1 3 28 28 H 1.09009 * 109.46571 * 277.11558 * 4 3 2 29 29 H 1.08992 * 109.47688 * 37.11170 * 4 3 2 30 30 H 1.09002 * 109.47585 * 157.12156 * 4 3 2 31 31 H 1.08997 * 109.59060 * 4.64214 * 8 7 5 32 32 H 1.09005 * 109.58950 * 244.21042 * 8 7 5 33 33 H 1.09002 * 109.52857 * 292.52674 * 9 8 7 34 34 H 1.08994 * 109.52917 * 172.30432 * 9 8 7 35 35 H 1.09003 * 113.78585 * 205.27022 * 11 10 9 36 36 H 1.08997 * 113.79305 * 336.73803 * 11 10 9 37 37 H 0.97000 * 119.99335 * 179.97438 * 16 15 13 38 38 H 1.09003 * 113.78771 * 221.41119 * 21 12 11 39 39 H 1.09000 * 113.79280 * 89.95374 * 21 12 11 40 40 H 1.08999 * 109.52807 * 177.47030 * 22 10 9 41 41 H 1.08997 * 109.52750 * 297.68028 * 22 10 9 42 42 H 1.08999 * 109.58795 * 355.34888 * 23 7 5 43 43 H 1.09001 * 109.58992 * 115.78592 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6790 1.1518 -0.0006 5 6 1.4365 2.4258 0.0006 6 8 0.3114 2.4784 -0.4580 7 7 2.0095 3.5344 0.5093 8 6 1.3415 4.8377 0.3949 9 6 1.1874 5.4377 1.7975 10 6 2.5463 5.4374 2.4935 11 6 3.5104 6.5052 1.9579 12 7 2.9540 7.3843 3.0058 13 6 2.8473 8.7405 3.1629 14 1 3.2752 9.4047 2.4266 15 6 2.1891 9.2615 4.2684 16 7 1.7931 8.4617 5.2358 17 14 1.8655 11.0977 4.3832 18 1 0.5017 11.3926 3.8751 19 1 1.9706 11.5312 5.7996 20 1 2.8670 11.8288 3.5661 21 6 2.5594 6.2150 3.8166 22 6 3.1696 4.0475 2.5945 23 6 3.3105 3.4567 1.1867 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 2.0470 -0.9352 -0.0004 28 1 4.0426 1.0242 1.0191 29 1 4.0421 0.3325 -0.6209 30 1 4.0422 2.0987 -0.4000 31 1 0.3581 4.7059 -0.0564 32 1 1.9434 5.5037 -0.2234 33 1 0.4824 4.8391 2.3744 34 1 0.8190 6.4604 1.7178 35 1 4.5625 6.2599 2.1028 36 1 3.2841 6.8328 0.9433 37 1 1.3335 8.8259 6.0085 38 1 1.5772 6.3122 4.2794 39 1 3.3288 5.8835 4.5139 40 1 4.1531 4.1221 3.0586 41 1 2.5290 3.4039 3.1974 42 1 3.6241 2.4152 1.2571 43 1 4.0501 4.0260 0.6238 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035683727.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:16 Heat of formation + Delta-G solvation = 31.706989 kcal Electronic energy + Delta-G solvation = -22631.874572 eV Core-core repulsion = 19486.038332 eV Total energy + Delta-G solvation = -3145.836240 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.71543 -40.25754 -37.18667 -36.17304 -34.43224 -32.56499 -32.02515 -30.56492 -28.74354 -26.82918 -26.26566 -24.93640 -24.37691 -23.17459 -22.05907 -19.97804 -18.70285 -18.57820 -17.41497 -16.88797 -16.45676 -16.31712 -16.11729 -15.64001 -15.40490 -15.20821 -14.77413 -14.50962 -14.21256 -14.02777 -13.93476 -13.58296 -13.44407 -13.25698 -12.99634 -12.84628 -12.81395 -12.63930 -12.53861 -12.24710 -12.10006 -12.05770 -11.66080 -11.53124 -11.06401 -10.95619 -10.75363 -10.48305 -9.91666 -9.46355 -8.88138 -7.90224 -5.20794 0.53376 1.43430 1.45606 1.53866 2.05276 2.27601 2.47515 3.31760 3.41697 3.59349 3.65069 3.94487 3.99826 4.02343 4.19727 4.30715 4.41818 4.44660 4.50268 4.67201 4.71617 4.75582 4.76928 4.79557 4.87869 4.89321 4.93242 4.99580 5.06343 5.09381 5.13957 5.21064 5.28557 5.29808 5.35504 5.56204 5.56653 5.60732 5.72629 5.77794 5.96435 6.54579 6.93786 7.22522 7.63190 8.60819 9.27171 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.037165 B = 0.003996 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.216322 B = 7005.149546 C = 7235.658299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.068 4.068 3 C -0.205 4.205 4 C -0.117 4.117 5 C 0.542 3.458 6 O -0.585 6.585 7 N -0.601 5.601 8 C 0.124 3.876 9 C -0.088 4.088 10 C -0.083 4.083 11 C 0.131 3.869 12 N -0.639 5.639 13 C -0.232 4.232 14 H 0.081 0.919 15 C -0.067 4.067 16 N -0.953 5.953 17 Si 0.974 3.026 18 H -0.289 1.289 19 H -0.295 1.295 20 H -0.267 1.267 21 C 0.167 3.833 22 C -0.113 4.113 23 C 0.081 3.919 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.161 0.839 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.246 0.754 38 H 0.030 0.970 39 H 0.017 0.983 40 H 0.090 0.910 41 H 0.062 0.938 42 H 0.143 0.857 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.261 -18.955 -10.683 22.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.087 4.087 3 C -0.208 4.208 4 C -0.172 4.172 5 C 0.334 3.666 6 O -0.468 6.468 7 N -0.332 5.332 8 C 0.001 3.999 9 C -0.126 4.126 10 C -0.084 4.084 11 C 0.006 3.994 12 N -0.365 5.365 13 C -0.360 4.360 14 H 0.099 0.901 15 C -0.260 4.260 16 N -0.603 5.603 17 Si 0.802 3.198 18 H -0.217 1.217 19 H -0.222 1.222 20 H -0.191 1.191 21 C 0.042 3.958 22 C -0.152 4.152 23 C -0.039 4.039 24 H 0.067 0.933 25 H 0.084 0.916 26 H 0.097 0.903 27 H 0.179 0.821 28 H 0.116 0.884 29 H 0.106 0.894 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.048 0.952 39 H 0.035 0.965 40 H 0.108 0.892 41 H 0.081 0.919 42 H 0.160 0.840 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.626 -18.591 -10.787 21.986 hybrid contribution -0.588 1.747 0.795 2.008 sum 4.037 -16.844 -9.992 19.996 Atomic orbital electron populations 1.21000 0.93468 1.02218 1.02100 1.23823 0.96266 0.97798 0.90851 1.21594 0.98125 0.91572 1.09532 1.21167 0.88427 1.04142 1.03482 1.19200 0.85391 0.84994 0.77055 1.90720 1.20496 1.86108 1.49432 1.48088 1.22048 1.06992 1.56061 1.21427 0.98442 0.83826 0.96239 1.21328 0.95822 0.99922 0.95554 1.22091 0.95420 0.94410 0.96454 1.22758 0.95706 0.88253 0.92633 1.46379 1.68686 1.00490 1.20971 1.19424 1.29062 0.81953 1.05583 0.90097 1.25565 1.01829 1.01991 0.96570 1.70031 1.45663 1.35025 1.09553 0.85126 0.78015 0.80088 0.76534 1.21664 1.22221 1.19140 1.22191 0.96938 0.84417 0.92302 1.21825 1.01639 0.94018 0.97745 1.22962 0.83494 1.05902 0.91562 0.93316 0.91552 0.90275 0.82141 0.88358 0.89418 0.90876 0.90608 0.90654 0.93205 0.92865 0.93078 0.93288 0.94471 0.95185 0.96525 0.89194 0.91940 0.84033 0.89927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 8.54 71.24 0.61 -2.05 16 2 C -0.07 -1.10 9.97 24.52 0.24 -0.86 16 3 C -0.21 -3.85 5.63 -18.70 -0.11 -3.95 16 4 C -0.12 -1.25 7.97 71.24 0.57 -0.69 16 5 C 0.54 14.89 7.22 86.57 0.63 15.51 16 6 O -0.59 -20.29 13.22 -4.06 -0.05 -20.34 16 7 N -0.60 -15.76 2.94 -822.83 -2.42 -18.18 16 8 C 0.12 3.77 6.30 86.42 0.54 4.32 16 9 C -0.09 -3.18 5.21 30.60 0.16 -3.02 16 10 C -0.08 -2.94 0.77 -52.04 -0.04 -2.98 16 11 C 0.13 5.04 7.72 86.32 0.67 5.71 16 12 N -0.64 -32.78 3.53 -722.73 -2.55 -35.33 16 13 C -0.23 -13.18 10.69 84.03 0.90 -12.28 16 14 H 0.08 4.41 7.84 -2.91 -0.02 4.39 16 15 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 16 N -0.95 -58.84 11.43 21.65 0.25 -58.60 16 17 Si 0.97 46.71 29.56 68.60 2.03 48.73 16 18 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 19 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 20 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 21 C 0.17 7.98 6.65 86.31 0.57 8.56 16 22 C -0.11 -2.93 5.26 30.60 0.16 -2.77 16 23 C 0.08 1.64 4.63 86.42 0.40 2.04 16 24 H 0.05 1.18 7.93 -2.38 -0.02 1.16 16 25 H 0.07 1.67 6.73 -2.39 -0.02 1.66 16 26 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 28 H 0.10 0.72 6.78 -2.38 -0.02 0.70 16 29 H 0.09 0.62 8.12 -2.39 -0.02 0.60 16 30 H 0.07 0.84 6.36 -2.39 -0.02 0.83 16 31 H 0.08 2.50 6.97 -2.39 -0.02 2.48 16 32 H 0.08 2.16 7.50 -2.38 -0.02 2.15 16 33 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.05 2.25 8.01 -2.39 -0.02 2.23 16 35 H 0.05 1.80 8.07 -2.39 -0.02 1.78 16 36 H 0.05 1.80 7.41 -2.39 -0.02 1.78 16 37 H 0.25 14.82 8.31 -92.71 -0.77 14.04 16 38 H 0.03 1.65 7.14 -2.39 -0.02 1.64 16 39 H 0.02 0.82 8.09 -2.39 -0.02 0.80 16 40 H 0.09 2.10 8.12 -2.39 -0.02 2.08 16 41 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.14 2.00 3.02 -4.04 -0.01 1.99 16 43 H 0.08 1.48 8.02 -2.39 -0.02 1.46 16 Total: -1.00 -73.79 330.99 4.00 -69.79 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 0.98 Total: 9.81 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: 5.77 Total: 4.12 kcal Atomic # 7 Polarization: -107.38 SS G_CDS: -4.73 Total: -112.11 kcal Atomic # 8 Polarization: -20.29 SS G_CDS: -0.05 Total: -20.34 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.73 kcal Total: -73.79 4.00 -69.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035683727.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.492 kcal (2) G-P(sol) polarization free energy of solvation -73.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds