Wall clock time and date at job start Tue Mar 31 2020 00:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32995 * 119.99738 * 2 1 4 4 C 1.50695 * 120.00221 * 359.97438 * 3 2 1 5 5 C 1.47106 * 119.99431 * 179.97438 * 3 2 1 6 6 O 1.21619 * 119.99752 * 261.97291 * 5 3 2 7 7 N 1.34771 * 119.99966 * 81.97759 * 5 3 2 8 8 C 1.46891 * 120.47061 * 174.86059 * 7 5 3 9 9 C 1.53338 * 108.76028 * 124.46773 * 8 7 5 10 10 C 1.52666 * 109.11304 * 52.41299 * 9 8 7 11 11 C 1.53511 * 113.57487 * 73.83907 * 10 9 8 12 12 N 1.47674 * 85.98037 * 91.00359 * 11 10 9 13 13 C 1.36932 * 134.45782 * 204.29600 * 12 11 10 14 14 H 1.07999 * 120.00316 * 359.97438 * 13 12 11 15 15 C 1.38816 * 119.99760 * 180.02562 * 13 12 11 16 16 N 1.31611 * 120.00007 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99691 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46939 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.46695 * 119.99730 * 17 15 13 20 20 H 1.48500 * 109.46358 * 239.99574 * 17 15 13 21 21 C 1.47671 * 91.08250 * 24.31811 * 12 11 10 22 22 C 1.52664 * 113.19096 * 302.42063 * 10 9 8 23 23 C 1.46885 * 120.47148 * 354.87557 * 7 5 3 24 24 H 1.09000 * 109.46723 * 60.00116 * 1 2 3 25 25 H 1.09002 * 109.47371 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47069 * 300.00028 * 1 2 3 27 27 H 1.08002 * 120.00117 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47161 * 275.49813 * 4 3 2 29 29 H 1.09001 * 109.47051 * 35.49985 * 4 3 2 30 30 H 1.09000 * 109.46934 * 155.50307 * 4 3 2 31 31 H 1.09000 * 109.59308 * 4.68158 * 8 7 5 32 32 H 1.08998 * 109.58770 * 244.24934 * 8 7 5 33 33 H 1.08995 * 109.52816 * 292.52246 * 9 8 7 34 34 H 1.09003 * 109.52780 * 172.30523 * 9 8 7 35 35 H 1.08994 * 113.79181 * 205.27003 * 11 10 9 36 36 H 1.09000 * 113.78712 * 336.74595 * 11 10 9 37 37 H 0.97003 * 120.00047 * 180.02562 * 16 15 13 38 38 H 1.08999 * 113.78892 * 221.40614 * 21 12 11 39 39 H 1.08996 * 113.78958 * 89.94890 * 21 12 11 40 40 H 1.09008 * 109.53128 * 177.47115 * 22 10 9 41 41 H 1.09002 * 109.53005 * 297.68741 * 22 10 9 42 42 H 1.08996 * 109.58601 * 355.30539 * 23 7 5 43 43 H 1.08998 * 109.58785 * 115.74710 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4185 2.4569 -0.0006 5 6 3.6430 1.1517 0.0006 6 8 4.2507 1.2990 1.0437 7 7 4.3173 0.9885 -1.1549 8 6 5.7818 1.0987 -1.1846 9 6 6.3612 -0.1890 -1.7824 10 6 5.6807 -0.4695 -3.1199 11 6 6.1398 0.4628 -4.2498 12 7 7.1653 -0.5604 -4.5367 13 6 8.3949 -0.5432 -5.1389 14 1 8.7939 0.3828 -5.5258 15 6 9.1282 -1.7164 -5.2530 16 7 8.6418 -2.8449 -4.7820 17 14 10.8061 -1.6928 -6.0740 18 1 11.1224 -0.3103 -6.5143 19 1 11.8360 -2.1531 -5.1083 20 1 10.7932 -2.5966 -7.2523 21 6 6.3329 -1.6094 -3.9144 22 6 4.1631 -0.5921 -3.0083 23 6 3.5982 0.6983 -2.4023 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 2.0471 -0.9353 0.0004 28 1 1.1519 2.7221 -1.0237 29 1 0.5120 2.3533 0.5959 30 1 2.0465 3.2392 0.4256 31 1 6.1589 1.2329 -0.1708 32 1 6.0717 1.9501 -1.8003 33 1 6.1814 -1.0202 -1.1007 34 1 7.4334 -0.0686 -1.9372 35 1 5.4050 0.5841 -5.0456 36 1 6.5498 1.4099 -3.8991 37 1 9.1544 -3.6646 -4.8614 38 1 6.8963 -2.3093 -3.2973 39 1 5.6555 -2.1039 -4.6106 40 1 3.7361 -0.7466 -3.9993 41 1 3.9119 -1.4365 -2.3664 42 1 2.5369 0.5686 -2.1906 43 1 3.7353 1.5218 -3.1032 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035683728.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:20 Heat of formation + Delta-G solvation = 28.928341 kcal Electronic energy + Delta-G solvation = -22459.307339 eV Core-core repulsion = 19313.350608 eV Total energy + Delta-G solvation = -3145.956731 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.38326 -38.76455 -35.79114 -35.66621 -32.45625 -31.02434 -30.47423 -29.42235 -27.03101 -26.23015 -25.00483 -23.61318 -23.17201 -21.53695 -20.47226 -18.66118 -17.27995 -16.72403 -16.62207 -16.06578 -15.17678 -14.86230 -14.64718 -14.29053 -14.01352 -13.79682 -13.71059 -13.54576 -12.81844 -12.79320 -12.59121 -12.42113 -12.32449 -12.21206 -12.05536 -11.66569 -11.52621 -11.09196 -11.02625 -10.86193 -10.81828 -10.31777 -10.14437 -9.79246 -9.69807 -9.55485 -9.33560 -9.03697 -8.77424 -8.40446 -6.83976 -5.74601 -3.06193 1.64779 2.64999 3.17026 3.39531 3.44982 3.47433 4.43111 4.47390 4.77408 4.96427 5.00615 5.08388 5.13784 5.23130 5.29035 5.31270 5.37333 5.45087 5.49030 5.54781 5.60031 5.66519 5.71398 5.72889 5.90281 5.95011 5.98699 6.19089 6.23639 6.30344 6.33986 6.42914 6.47283 6.64236 6.66739 6.83037 6.89678 7.25755 7.39801 7.51303 7.60905 8.01089 8.22213 9.07336 9.73513 10.63899 11.42421 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.037496 B = 0.003906 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.557752 B = 7166.138114 C = 7393.493749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.123 4.123 3 C -0.161 4.161 4 C -0.105 4.105 5 C 0.554 3.446 6 O -0.546 6.546 7 N -0.598 5.598 8 C 0.112 3.888 9 C -0.095 4.095 10 C -0.109 4.109 11 C 0.126 3.874 12 N -0.609 5.609 13 C -0.221 4.221 14 H 0.078 0.922 15 C -0.008 4.008 16 N -0.921 5.921 17 Si 0.909 3.091 18 H -0.280 1.280 19 H -0.290 1.290 20 H -0.291 1.291 21 C 0.173 3.827 22 C -0.117 4.117 23 C 0.109 3.891 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.115 0.885 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.031 0.969 36 H 0.040 0.960 37 H 0.252 0.748 38 H 0.072 0.928 39 H 0.024 0.976 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.081 0.919 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.881 7.272 7.117 19.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.142 4.142 3 C -0.164 4.164 4 C -0.161 4.161 5 C 0.342 3.658 6 O -0.424 6.424 7 N -0.331 5.331 8 C -0.010 4.010 9 C -0.134 4.134 10 C -0.110 4.110 11 C 0.000 4.000 12 N -0.335 5.335 13 C -0.349 4.349 14 H 0.096 0.904 15 C -0.204 4.204 16 N -0.568 5.568 17 Si 0.740 3.260 18 H -0.205 1.205 19 H -0.217 1.217 20 H -0.218 1.218 21 C 0.048 3.952 22 C -0.156 4.156 23 C -0.013 4.013 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.133 0.867 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.048 0.952 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.042 0.958 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.220 7.228 7.533 19.289 hybrid contribution 0.968 -0.244 -0.773 1.262 sum -15.252 6.984 6.759 18.086 Atomic orbital electron populations 1.20873 0.92133 1.02744 1.02237 1.23254 0.96482 0.96898 0.97540 1.21402 0.92885 0.97086 1.05068 1.20682 0.99538 0.93592 1.02337 1.18575 0.87694 0.76093 0.83415 1.90788 1.69923 1.50454 1.31285 1.48149 1.07727 1.69171 1.08026 1.21726 0.78261 0.98734 1.02288 1.21476 1.00997 0.96047 0.94837 1.22389 0.92393 1.01142 0.95085 1.22589 0.90861 0.93332 0.93182 1.45962 1.14129 1.04347 1.69049 1.19061 0.90737 0.94459 1.30602 0.90373 1.24754 0.98760 0.95361 1.01564 1.69824 1.37746 0.98483 1.50755 0.86092 0.83915 0.77290 0.78748 1.20521 1.21737 1.21840 1.22232 0.89966 0.91226 0.91800 1.21822 0.96490 0.96495 1.00836 1.21788 0.96118 0.98222 0.85203 0.91060 0.91656 0.91157 0.86716 0.90856 0.90934 0.91651 0.89409 0.91363 0.92172 0.89467 0.95171 0.94182 0.93781 0.91017 0.95786 0.90691 0.91892 0.90048 0.91292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 8.98 36.01 0.32 -0.50 16 2 C -0.12 -1.18 9.08 -36.12 -0.33 -1.51 16 3 C -0.16 -1.81 4.16 -102.85 -0.43 -2.23 16 4 C -0.10 -0.90 9.45 36.00 0.34 -0.56 16 5 C 0.55 8.22 7.04 -12.67 -0.09 8.13 16 6 O -0.55 -10.18 16.50 5.26 0.09 -10.09 16 7 N -0.60 -8.43 2.94 -174.04 -0.51 -8.94 16 8 C 0.11 1.71 6.30 -3.65 -0.02 1.69 16 9 C -0.10 -1.66 5.21 -26.73 -0.14 -1.80 16 10 C -0.11 -1.93 0.77 -154.43 -0.12 -2.05 16 11 C 0.13 2.48 7.73 -3.14 -0.02 2.46 16 12 N -0.61 -15.28 3.53 -179.73 -0.63 -15.92 16 13 C -0.22 -6.16 10.70 -15.06 -0.16 -6.32 16 14 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 15 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 16 N -0.92 -27.25 11.39 55.49 0.63 -26.62 16 17 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 C 0.17 3.98 6.64 -3.15 -0.02 3.96 16 22 C -0.12 -1.64 5.26 -26.73 -0.14 -1.78 16 23 C 0.11 1.31 6.19 -3.66 -0.02 1.29 16 24 H 0.07 0.41 8.10 -51.93 -0.42 -0.02 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.43 7.41 -51.93 -0.38 0.05 16 27 H 0.11 1.18 8.05 -52.49 -0.42 0.76 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.51 6.72 -51.93 -0.35 0.16 16 30 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 31 H 0.09 1.42 6.97 -51.93 -0.36 1.06 16 32 H 0.07 1.00 7.50 -51.93 -0.39 0.61 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.09 1.73 8.01 -51.93 -0.42 1.32 16 35 H 0.03 0.58 8.07 -51.93 -0.42 0.16 16 36 H 0.04 0.76 7.41 -51.93 -0.38 0.38 16 37 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.07 1.86 7.12 -51.93 -0.37 1.49 16 39 H 0.02 0.57 8.09 -51.93 -0.42 0.15 16 40 H 0.07 1.00 8.12 -51.92 -0.42 0.57 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.08 0.81 5.70 -51.93 -0.30 0.52 16 43 H 0.07 0.79 8.08 -51.93 -0.42 0.37 16 LS Contribution 340.38 15.07 5.13 5.13 Total: -1.00 -32.62 340.38 -8.38 -41.00 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -7.13 Total: -2.19 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -0.93 Total: 0.46 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: -0.51 Total: -51.48 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.62 -8.38 -41.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035683728.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.928 kcal (2) G-P(sol) polarization free energy of solvation -32.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds