Wall clock time and date at job start Tue Mar 31 2020 00:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32995 * 119.99738 * 2 1 4 4 C 1.50695 * 120.00221 * 359.97438 * 3 2 1 5 5 C 1.47106 * 119.99431 * 179.97438 * 3 2 1 6 6 O 1.21619 * 119.99752 * 261.97291 * 5 3 2 7 7 N 1.34771 * 119.99966 * 81.97759 * 5 3 2 8 8 C 1.46891 * 120.47061 * 174.86059 * 7 5 3 9 9 C 1.53338 * 108.76028 * 124.46773 * 8 7 5 10 10 C 1.52666 * 109.11304 * 52.41299 * 9 8 7 11 11 C 1.53511 * 113.57487 * 73.83907 * 10 9 8 12 12 N 1.47674 * 85.98037 * 91.00359 * 11 10 9 13 13 C 1.36932 * 134.45782 * 204.29600 * 12 11 10 14 14 H 1.07999 * 120.00316 * 359.97438 * 13 12 11 15 15 C 1.38816 * 119.99760 * 180.02562 * 13 12 11 16 16 N 1.31611 * 120.00007 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99691 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46939 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.46695 * 119.99730 * 17 15 13 20 20 H 1.48500 * 109.46358 * 239.99574 * 17 15 13 21 21 C 1.47671 * 91.08250 * 24.31811 * 12 11 10 22 22 C 1.52664 * 113.19096 * 302.42063 * 10 9 8 23 23 C 1.46885 * 120.47148 * 354.87557 * 7 5 3 24 24 H 1.09000 * 109.46723 * 60.00116 * 1 2 3 25 25 H 1.09002 * 109.47371 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47069 * 300.00028 * 1 2 3 27 27 H 1.08002 * 120.00117 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47161 * 275.49813 * 4 3 2 29 29 H 1.09001 * 109.47051 * 35.49985 * 4 3 2 30 30 H 1.09000 * 109.46934 * 155.50307 * 4 3 2 31 31 H 1.09000 * 109.59308 * 4.68158 * 8 7 5 32 32 H 1.08998 * 109.58770 * 244.24934 * 8 7 5 33 33 H 1.08995 * 109.52816 * 292.52246 * 9 8 7 34 34 H 1.09003 * 109.52780 * 172.30523 * 9 8 7 35 35 H 1.08994 * 113.79181 * 205.27003 * 11 10 9 36 36 H 1.09000 * 113.78712 * 336.74595 * 11 10 9 37 37 H 0.97003 * 120.00047 * 180.02562 * 16 15 13 38 38 H 1.08999 * 113.78892 * 221.40614 * 21 12 11 39 39 H 1.08996 * 113.78958 * 89.94890 * 21 12 11 40 40 H 1.09008 * 109.53128 * 177.47115 * 22 10 9 41 41 H 1.09002 * 109.53005 * 297.68741 * 22 10 9 42 42 H 1.08996 * 109.58601 * 355.30539 * 23 7 5 43 43 H 1.08998 * 109.58785 * 115.74710 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4185 2.4569 -0.0006 5 6 3.6430 1.1517 0.0006 6 8 4.2507 1.2990 1.0437 7 7 4.3173 0.9885 -1.1549 8 6 5.7818 1.0987 -1.1846 9 6 6.3612 -0.1890 -1.7824 10 6 5.6807 -0.4695 -3.1199 11 6 6.1398 0.4628 -4.2498 12 7 7.1653 -0.5604 -4.5367 13 6 8.3949 -0.5432 -5.1389 14 1 8.7939 0.3828 -5.5258 15 6 9.1282 -1.7164 -5.2530 16 7 8.6418 -2.8449 -4.7820 17 14 10.8061 -1.6928 -6.0740 18 1 11.1224 -0.3103 -6.5143 19 1 11.8360 -2.1531 -5.1083 20 1 10.7932 -2.5966 -7.2523 21 6 6.3329 -1.6094 -3.9144 22 6 4.1631 -0.5921 -3.0083 23 6 3.5982 0.6983 -2.4023 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 2.0471 -0.9353 0.0004 28 1 1.1519 2.7221 -1.0237 29 1 0.5120 2.3533 0.5959 30 1 2.0465 3.2392 0.4256 31 1 6.1589 1.2329 -0.1708 32 1 6.0717 1.9501 -1.8003 33 1 6.1814 -1.0202 -1.1007 34 1 7.4334 -0.0686 -1.9372 35 1 5.4050 0.5841 -5.0456 36 1 6.5498 1.4099 -3.8991 37 1 9.1544 -3.6646 -4.8614 38 1 6.8963 -2.3093 -3.2973 39 1 5.6555 -2.1039 -4.6106 40 1 3.7361 -0.7466 -3.9993 41 1 3.9119 -1.4365 -2.3664 42 1 2.5369 0.5686 -2.1906 43 1 3.7353 1.5218 -3.1032 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035683728.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:19 Heat of formation + Delta-G solvation = 9.242891 kcal Electronic energy + Delta-G solvation = -22460.160964 eV Core-core repulsion = 19313.350608 eV Total energy + Delta-G solvation = -3146.810356 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.65103 -40.20523 -37.06243 -36.61028 -34.38935 -32.25018 -32.03501 -30.11854 -28.69970 -27.19488 -26.67507 -25.05749 -24.38895 -23.09138 -21.70430 -19.82777 -18.69804 -18.45235 -17.75643 -17.16742 -16.86980 -16.27627 -16.11879 -15.63107 -15.34851 -15.10532 -14.80801 -14.52404 -14.06166 -14.00294 -13.64845 -13.58531 -13.39670 -13.30177 -13.08355 -12.91794 -12.85383 -12.85094 -12.63551 -12.20564 -12.14436 -12.12527 -11.66269 -11.57804 -11.19675 -11.04579 -10.82793 -10.81078 -9.81330 -9.63774 -8.87042 -7.88888 -5.20732 0.86931 1.44231 1.44892 1.53621 1.54959 2.08078 2.47816 3.31850 3.42229 3.50698 3.61457 3.95752 3.96574 4.08784 4.15773 4.28488 4.38980 4.43781 4.54735 4.60868 4.67500 4.74907 4.77117 4.81285 4.85363 4.91079 4.96784 4.97695 5.02939 5.11348 5.12928 5.19601 5.20344 5.29252 5.33374 5.49440 5.58143 5.59938 5.73455 5.75340 5.97280 6.40401 6.94577 7.08921 7.63658 8.60805 9.28061 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.037496 B = 0.003906 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.557752 B = 7166.138114 C = 7393.493749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.108 4.108 3 C -0.181 4.181 4 C -0.100 4.100 5 C 0.550 3.450 6 O -0.594 6.594 7 N -0.598 5.598 8 C 0.121 3.879 9 C -0.088 4.088 10 C -0.083 4.083 11 C 0.131 3.869 12 N -0.639 5.639 13 C -0.229 4.229 14 H 0.082 0.918 15 C -0.068 4.068 16 N -0.954 5.954 17 Si 0.974 3.026 18 H -0.265 1.265 19 H -0.294 1.294 20 H -0.293 1.293 21 C 0.168 3.832 22 C -0.111 4.111 23 C 0.114 3.886 24 H 0.090 0.910 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.103 0.897 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.050 0.950 37 H 0.246 0.754 38 H 0.032 0.968 39 H 0.018 0.982 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.111 0.889 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.519 8.790 6.558 22.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.127 4.127 3 C -0.184 4.184 4 C -0.156 4.156 5 C 0.340 3.660 6 O -0.475 6.475 7 N -0.329 5.329 8 C -0.001 4.001 9 C -0.127 4.127 10 C -0.084 4.084 11 C 0.006 3.994 12 N -0.365 5.365 13 C -0.357 4.357 14 H 0.099 0.901 15 C -0.261 4.261 16 N -0.603 5.603 17 Si 0.803 3.197 18 H -0.189 1.189 19 H -0.222 1.222 20 H -0.220 1.220 21 C 0.043 3.957 22 C -0.150 4.150 23 C -0.008 4.008 24 H 0.108 0.892 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.122 0.878 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.035 0.965 40 H 0.109 0.891 41 H 0.083 0.917 42 H 0.129 0.871 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -18.897 8.780 6.952 21.966 hybrid contribution 1.773 -0.746 -0.576 2.008 sum -17.124 8.034 6.376 19.961 Atomic orbital electron populations 1.20946 0.89503 1.03814 1.03488 1.23470 0.98258 0.95797 0.95204 1.21372 0.90464 0.98922 1.07657 1.20722 0.99484 0.91566 1.03856 1.19279 0.89358 0.74723 0.82606 1.90760 1.71279 1.52562 1.32937 1.48240 1.07017 1.68741 1.08930 1.21493 0.79551 0.97525 1.01545 1.21336 0.99325 0.97118 0.94882 1.22101 0.95049 0.97304 0.93951 1.22771 0.89713 0.92908 0.94004 1.46329 1.14576 1.06717 1.68913 1.19448 0.92185 0.94526 1.29586 0.90055 1.25562 1.02393 0.95218 1.02939 1.70018 1.39014 0.98822 1.52495 0.85071 0.79590 0.77728 0.77341 1.18938 1.22172 1.22039 1.22171 0.89785 0.91792 0.91991 1.21786 0.93007 0.98001 1.02189 1.21929 0.97237 0.97346 0.84242 0.89196 0.90819 0.90205 0.87847 0.88847 0.89062 0.93197 0.90590 0.90224 0.93044 0.92598 0.93005 0.93217 0.94505 0.94976 0.96454 0.89061 0.91691 0.87132 0.89646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 8.98 71.24 0.64 -0.47 16 2 C -0.11 -1.76 9.08 24.52 0.22 -1.53 16 3 C -0.18 -3.58 4.16 -18.70 -0.08 -3.66 16 4 C -0.10 -1.39 9.45 71.23 0.67 -0.72 16 5 C 0.55 15.68 7.04 86.57 0.61 16.29 16 6 O -0.59 -22.28 16.50 -4.09 -0.07 -22.35 16 7 N -0.60 -15.83 2.94 -822.80 -2.42 -18.25 16 8 C 0.12 3.68 6.30 86.42 0.54 4.23 16 9 C -0.09 -3.14 5.21 30.60 0.16 -2.98 16 10 C -0.08 -2.90 0.77 -52.04 -0.04 -2.94 16 11 C 0.13 4.94 7.73 86.32 0.67 5.61 16 12 N -0.64 -32.41 3.53 -722.53 -2.55 -34.96 16 13 C -0.23 -12.91 10.70 84.04 0.90 -12.01 16 14 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 15 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 16 N -0.95 -58.48 11.39 21.65 0.25 -58.23 16 17 Si 0.97 46.47 29.55 68.60 2.03 48.49 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 19 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 20 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 21 C 0.17 7.93 6.64 86.31 0.57 8.50 16 22 C -0.11 -2.82 5.26 30.60 0.16 -2.66 16 23 C 0.11 2.33 6.19 86.42 0.53 2.87 16 24 H 0.09 0.56 8.10 -2.39 -0.02 0.54 16 25 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.08 0.64 7.41 -2.38 -0.02 0.63 16 27 H 0.10 1.91 8.05 -2.91 -0.02 1.88 16 28 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.09 0.92 6.72 -2.39 -0.02 0.90 16 30 H 0.05 0.85 8.08 -2.39 -0.02 0.83 16 31 H 0.08 2.51 6.97 -2.39 -0.02 2.49 16 32 H 0.08 2.24 7.50 -2.39 -0.02 2.22 16 33 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.06 2.33 8.01 -2.39 -0.02 2.31 16 35 H 0.05 1.80 8.07 -2.39 -0.02 1.78 16 36 H 0.05 1.80 7.41 -2.39 -0.02 1.78 16 37 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 38 H 0.03 1.75 7.12 -2.39 -0.02 1.73 16 39 H 0.02 0.84 8.09 -2.39 -0.02 0.82 16 40 H 0.09 2.10 8.12 -2.38 -0.02 2.08 16 41 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.11 1.71 5.70 -2.39 -0.01 1.69 16 43 H 0.09 1.56 8.08 -2.39 -0.02 1.54 16 Total: -1.00 -73.80 340.38 4.24 -69.56 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 0.97 Total: 8.69 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 6.03 Total: 7.04 kcal Atomic # 7 Polarization: -106.71 SS G_CDS: -4.73 Total: -111.44 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.07 Total: -22.35 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.49 kcal Total: -73.80 4.24 -69.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035683728.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.805 kcal (2) G-P(sol) polarization free energy of solvation -73.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds