Wall clock time and date at job start Tue Mar 31 2020 01:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33001 * 119.99909 * 2 1 4 4 C 1.50702 * 119.99909 * 179.97438 * 3 2 1 5 5 C 1.47097 * 119.99936 * 359.97438 * 3 2 1 6 6 O 1.21610 * 120.00315 * 262.76331 * 5 3 2 7 7 N 1.34775 * 120.00083 * 82.76380 * 5 3 2 8 8 C 1.46600 * 119.68803 * 355.29641 * 7 5 3 9 9 C 1.53956 * 110.57969 * 132.19667 * 8 7 5 10 10 C 1.51520 * 107.34883 * 51.05867 * 9 8 7 11 11 H 1.09001 * 108.81198 * 53.44484 * 10 9 8 12 12 C 1.55371 * 107.78480 * 295.14647 * 10 9 8 13 13 H 1.09000 * 111.50274 * 309.60530 * 12 10 9 14 14 C 1.53743 * 100.21929 * 190.92604 * 12 10 9 15 15 C 1.55286 * 101.84278 * 39.09380 * 14 12 10 16 16 N 1.45464 * 117.34396 * 178.10844 * 10 9 8 17 17 C 1.36934 * 126.40791 * 329.32756 * 16 10 9 18 18 H 1.08006 * 119.99655 * 359.97438 * 17 16 10 19 19 C 1.38812 * 120.00098 * 180.02562 * 17 16 10 20 20 N 1.31617 * 120.00183 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99758 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47113 * 89.99614 * 21 19 17 23 23 H 1.48500 * 109.46663 * 209.99680 * 21 19 17 24 24 H 1.48502 * 109.47065 * 329.99446 * 21 19 17 25 25 C 1.47722 * 119.68644 * 175.32009 * 7 5 3 26 26 H 1.08999 * 109.46995 * 60.00016 * 1 2 3 27 27 H 1.09001 * 109.46586 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46613 * 299.99923 * 1 2 3 29 29 H 1.08004 * 120.00253 * 179.97438 * 2 1 3 30 30 H 1.09005 * 109.46887 * 275.03260 * 4 3 2 31 31 H 1.08996 * 109.46798 * 35.03040 * 4 3 2 32 32 H 1.08995 * 109.47096 * 155.03380 * 4 3 2 33 33 H 1.08993 * 109.25507 * 252.48679 * 8 7 5 34 34 H 1.09003 * 109.24772 * 11.91945 * 8 7 5 35 35 H 1.08999 * 109.88001 * 170.51427 * 9 8 7 36 36 H 1.09000 * 109.88378 * 291.59271 * 9 8 7 37 37 H 1.08999 * 110.95291 * 157.23704 * 14 12 10 38 38 H 1.09003 * 110.95084 * 280.95407 * 14 12 10 39 39 H 1.08992 * 109.92252 * 218.17210 * 15 14 12 40 40 H 1.09005 * 110.08518 * 96.95835 * 15 14 12 41 41 H 0.96993 * 119.99871 * 180.02562 * 20 19 17 42 42 H 1.08997 * 110.07142 * 351.25408 * 25 7 5 43 43 H 1.09003 * 110.06684 * 112.82866 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6790 1.1518 0.0006 5 6 1.4365 2.4257 -0.0006 6 8 1.2477 3.0184 -1.0455 7 7 0.9718 2.9361 1.1570 8 6 1.1118 2.1674 2.3975 9 6 1.6739 3.0545 3.5233 10 6 0.8241 4.3078 3.5778 11 1 -0.2229 4.0189 3.6693 12 6 1.0270 5.0771 2.2432 13 1 2.0846 5.2075 2.0139 14 6 0.3447 6.4104 2.5905 15 6 0.7868 6.6202 4.0643 16 7 1.1435 5.2875 4.6045 17 6 1.6738 5.0267 5.8398 18 1 1.8945 4.0098 6.1290 19 6 1.9267 6.0693 6.7207 20 7 1.6573 7.3085 6.3686 21 14 2.6508 5.7135 8.4056 22 1 4.1331 5.7512 8.3253 23 1 2.1812 6.7381 9.3725 24 1 2.2136 4.3684 8.8583 25 6 0.3256 4.2644 1.1637 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 2.0471 -0.9353 0.0004 30 1 4.0419 1.0619 1.0245 31 1 4.0425 0.3102 -0.5890 32 1 4.0425 2.0833 -0.4332 33 1 0.1358 1.7842 2.6950 34 1 1.7893 1.3306 2.2271 35 1 1.6167 2.5263 4.4750 36 1 2.7091 3.3177 3.3061 37 1 0.7143 7.2147 1.9543 38 1 -0.7394 6.3242 2.5172 39 1 -0.0336 7.0472 4.6409 40 1 1.6527 7.2812 4.1049 41 1 1.8343 8.0370 6.9840 42 1 0.4493 4.7455 0.1936 43 1 -0.7337 4.1639 1.4002 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036682121.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:11 Heat of formation + Delta-G solvation = 4.682469 kcal Electronic energy + Delta-G solvation = -22837.794091 eV Core-core repulsion = 19690.785980 eV Total energy + Delta-G solvation = -3147.008111 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.38591 -38.37272 -35.53088 -35.16877 -32.61821 -31.55813 -30.36825 -29.59255 -28.14188 -25.37632 -24.69112 -23.73145 -22.37448 -21.53037 -20.06856 -19.53161 -18.03713 -16.65076 -16.21235 -15.73827 -15.45262 -14.99845 -14.41876 -14.23293 -13.90989 -13.87345 -13.67139 -13.11974 -13.03771 -12.83413 -12.56525 -12.44579 -12.30532 -11.92761 -11.68816 -11.62727 -11.46527 -11.41411 -10.83625 -10.81497 -10.71097 -10.16980 -10.11832 -9.89332 -9.66688 -9.64166 -9.48648 -8.98442 -8.63560 -8.49965 -6.84807 -5.72755 -3.05967 1.67177 2.66560 3.17355 3.38334 3.43184 3.45363 4.46247 4.48914 4.74434 4.99969 5.04188 5.10375 5.25236 5.30273 5.34643 5.41485 5.51388 5.52441 5.57260 5.59073 5.63310 5.72951 5.81514 5.87145 5.90609 6.03579 6.13352 6.17445 6.22320 6.26041 6.37394 6.45367 6.50983 6.61260 6.63683 6.84065 7.05888 7.49936 7.54426 7.60723 7.80145 8.23108 8.23508 9.18122 9.81831 10.50069 11.39774 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025203 B = 0.004800 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.719108 B = 5831.586027 C = 6405.457777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.124 4.124 3 C -0.161 4.161 4 C -0.105 4.105 5 C 0.556 3.444 6 O -0.547 6.547 7 N -0.600 5.600 8 C 0.112 3.888 9 C -0.130 4.130 10 C 0.168 3.832 11 H 0.019 0.981 12 C -0.124 4.124 13 H 0.079 0.921 14 C -0.135 4.135 15 C 0.176 3.824 16 N -0.594 5.594 17 C -0.226 4.226 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.921 5.921 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.126 3.874 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.123 0.877 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.038 0.962 40 H 0.055 0.945 41 H 0.252 0.748 42 H 0.088 0.912 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.900 -12.642 -10.648 16.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.143 4.143 3 C -0.163 4.163 4 C -0.162 4.162 5 C 0.344 3.656 6 O -0.425 6.425 7 N -0.332 5.332 8 C -0.011 4.011 9 C -0.169 4.169 10 C 0.059 3.941 11 H 0.036 0.964 12 C -0.144 4.144 13 H 0.097 0.903 14 C -0.174 4.174 15 C 0.052 3.948 16 N -0.319 5.319 17 C -0.354 4.354 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.569 5.569 21 Si 0.740 3.260 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.004 3.996 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.141 0.859 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.107 0.893 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.961 -12.184 -10.951 16.411 hybrid contribution 0.442 -0.147 1.070 1.167 sum -0.519 -12.331 -9.881 15.811 Atomic orbital electron populations 1.20985 0.92774 1.02720 1.02776 1.23268 0.96309 0.96717 0.98009 1.21504 0.97053 0.93166 1.04625 1.20673 0.89752 1.03152 1.02599 1.18574 0.78292 0.85137 0.83589 1.90775 1.58894 1.61520 1.31346 1.48333 1.58061 1.19367 1.07485 1.21789 1.01151 0.94114 0.84041 1.21901 1.00502 0.97297 0.97172 1.20627 0.95563 0.89682 0.88191 0.96379 1.22633 0.99991 0.96164 0.95606 0.90253 1.22697 0.99135 0.95631 0.99918 1.21537 0.99100 0.87324 0.86821 1.44203 1.74105 1.01291 1.12291 1.18989 1.34314 0.93037 0.89062 0.90407 1.24787 1.01644 0.95369 0.98590 1.69937 1.53382 0.98025 1.35519 0.86159 0.78821 0.77132 0.83887 1.21661 1.21702 1.20732 1.21635 0.95986 0.81467 1.00532 0.91223 0.91507 0.91071 0.85881 0.90732 0.91108 0.91452 0.91805 0.90056 0.90566 0.91404 0.92052 0.92308 0.94389 0.92668 0.93759 0.89329 0.91349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.16 36.01 0.33 -0.97 16 2 C -0.12 -1.22 9.48 -36.12 -0.34 -1.56 16 3 C -0.16 -1.92 3.85 -102.85 -0.40 -2.32 16 4 C -0.10 -1.06 10.02 36.01 0.36 -0.69 16 5 C 0.56 8.47 5.88 -12.67 -0.07 8.39 16 6 O -0.55 -10.20 16.48 5.27 0.09 -10.12 16 7 N -0.60 -8.82 3.00 -173.88 -0.52 -9.34 16 8 C 0.11 1.49 5.32 -3.49 -0.02 1.47 16 9 C -0.13 -2.15 5.48 -26.98 -0.15 -2.30 16 10 C 0.17 3.30 2.57 -67.98 -0.17 3.12 16 11 H 0.02 0.38 7.92 -51.93 -0.41 -0.03 16 12 C -0.12 -2.20 2.86 -89.36 -0.26 -2.46 16 13 H 0.08 1.53 8.11 -51.93 -0.42 1.11 16 14 C -0.13 -2.50 6.54 -25.13 -0.16 -2.67 16 15 C 0.18 4.22 5.46 -1.91 -0.01 4.21 16 16 N -0.59 -14.65 3.35 -163.09 -0.55 -15.20 16 17 C -0.23 -6.07 9.88 -15.06 -0.15 -6.22 16 18 H 0.08 2.00 7.22 -52.48 -0.38 1.62 16 19 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 20 N -0.92 -26.76 10.43 55.49 0.58 -26.18 16 21 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.13 1.95 5.94 -3.76 -0.02 1.93 16 26 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.72 6.87 -51.93 -0.36 0.36 16 29 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 32 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 33 H 0.06 0.78 7.81 -51.93 -0.41 0.38 16 34 H 0.08 0.93 5.96 -51.93 -0.31 0.62 16 35 H 0.08 1.27 7.62 -51.93 -0.40 0.88 16 36 H 0.07 1.19 8.11 -51.93 -0.42 0.77 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.06 1.01 8.12 -51.93 -0.42 0.58 16 39 H 0.04 1.00 7.77 -51.93 -0.40 0.59 16 40 H 0.06 1.47 7.20 -51.93 -0.37 1.10 16 41 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.09 1.43 7.03 -51.93 -0.36 1.06 16 43 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 LS Contribution 334.94 15.07 5.05 5.05 Total: -1.00 -31.31 334.94 -8.71 -40.02 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -7.17 Total: -0.59 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -1.16 Total: -0.35 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: -0.49 Total: -50.72 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.31 -8.71 -40.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036682121.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.701 kcal (2) G-P(sol) polarization free energy of solvation -31.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds