Wall clock time and date at job start Tue Mar 31 2020 01:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33001 * 119.99909 * 2 1 4 4 C 1.50702 * 119.99909 * 179.97438 * 3 2 1 5 5 C 1.47097 * 119.99936 * 359.97438 * 3 2 1 6 6 O 1.21610 * 120.00315 * 262.76331 * 5 3 2 7 7 N 1.34775 * 120.00083 * 82.76380 * 5 3 2 8 8 C 1.46600 * 119.68803 * 355.29641 * 7 5 3 9 9 C 1.53956 * 110.57969 * 132.19667 * 8 7 5 10 10 C 1.51520 * 107.34883 * 51.05867 * 9 8 7 11 11 H 1.09001 * 108.81198 * 53.44484 * 10 9 8 12 12 C 1.55371 * 107.78480 * 295.14647 * 10 9 8 13 13 H 1.09000 * 111.50274 * 309.60530 * 12 10 9 14 14 C 1.53743 * 100.21929 * 190.92604 * 12 10 9 15 15 C 1.55286 * 101.84278 * 39.09380 * 14 12 10 16 16 N 1.45464 * 117.34396 * 178.10844 * 10 9 8 17 17 C 1.36934 * 126.40791 * 329.32756 * 16 10 9 18 18 H 1.08006 * 119.99655 * 359.97438 * 17 16 10 19 19 C 1.38812 * 120.00098 * 180.02562 * 17 16 10 20 20 N 1.31617 * 120.00183 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99758 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47113 * 89.99614 * 21 19 17 23 23 H 1.48500 * 109.46663 * 209.99680 * 21 19 17 24 24 H 1.48502 * 109.47065 * 329.99446 * 21 19 17 25 25 C 1.47722 * 119.68644 * 175.32009 * 7 5 3 26 26 H 1.08999 * 109.46995 * 60.00016 * 1 2 3 27 27 H 1.09001 * 109.46586 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46613 * 299.99923 * 1 2 3 29 29 H 1.08004 * 120.00253 * 179.97438 * 2 1 3 30 30 H 1.09005 * 109.46887 * 275.03260 * 4 3 2 31 31 H 1.08996 * 109.46798 * 35.03040 * 4 3 2 32 32 H 1.08995 * 109.47096 * 155.03380 * 4 3 2 33 33 H 1.08993 * 109.25507 * 252.48679 * 8 7 5 34 34 H 1.09003 * 109.24772 * 11.91945 * 8 7 5 35 35 H 1.08999 * 109.88001 * 170.51427 * 9 8 7 36 36 H 1.09000 * 109.88378 * 291.59271 * 9 8 7 37 37 H 1.08999 * 110.95291 * 157.23704 * 14 12 10 38 38 H 1.09003 * 110.95084 * 280.95407 * 14 12 10 39 39 H 1.08992 * 109.92252 * 218.17210 * 15 14 12 40 40 H 1.09005 * 110.08518 * 96.95835 * 15 14 12 41 41 H 0.96993 * 119.99871 * 180.02562 * 20 19 17 42 42 H 1.08997 * 110.07142 * 351.25408 * 25 7 5 43 43 H 1.09003 * 110.06684 * 112.82866 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6790 1.1518 0.0006 5 6 1.4365 2.4257 -0.0006 6 8 1.2477 3.0184 -1.0455 7 7 0.9718 2.9361 1.1570 8 6 1.1118 2.1674 2.3975 9 6 1.6739 3.0545 3.5233 10 6 0.8241 4.3078 3.5778 11 1 -0.2229 4.0189 3.6693 12 6 1.0270 5.0771 2.2432 13 1 2.0846 5.2075 2.0139 14 6 0.3447 6.4104 2.5905 15 6 0.7868 6.6202 4.0643 16 7 1.1435 5.2875 4.6045 17 6 1.6738 5.0267 5.8398 18 1 1.8945 4.0098 6.1290 19 6 1.9267 6.0693 6.7207 20 7 1.6573 7.3085 6.3686 21 14 2.6508 5.7135 8.4056 22 1 4.1331 5.7512 8.3253 23 1 2.1812 6.7381 9.3725 24 1 2.2136 4.3684 8.8583 25 6 0.3256 4.2644 1.1637 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 2.0471 -0.9353 0.0004 30 1 4.0419 1.0619 1.0245 31 1 4.0425 0.3102 -0.5890 32 1 4.0425 2.0833 -0.4332 33 1 0.1358 1.7842 2.6950 34 1 1.7893 1.3306 2.2271 35 1 1.6167 2.5263 4.4750 36 1 2.7091 3.3177 3.3061 37 1 0.7143 7.2147 1.9543 38 1 -0.7394 6.3242 2.5172 39 1 -0.0336 7.0472 4.6409 40 1 1.6527 7.2812 4.1049 41 1 1.8343 8.0370 6.9840 42 1 0.4493 4.7455 0.1936 43 1 -0.7337 4.1639 1.4002 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036682121.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:10 Heat of formation + Delta-G solvation = -13.933306 kcal Electronic energy + Delta-G solvation = -22838.601331 eV Core-core repulsion = 19690.785980 eV Total energy + Delta-G solvation = -3147.815352 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.62937 -39.83649 -36.82339 -36.28763 -34.42900 -33.04089 -31.34111 -31.07026 -29.71595 -26.80887 -26.05279 -24.95733 -23.77514 -22.69018 -21.85178 -20.99675 -19.29075 -18.30960 -17.55670 -16.99846 -16.71560 -16.46883 -15.97786 -15.68191 -15.23043 -15.13527 -14.70281 -14.55229 -14.14971 -13.99225 -13.95054 -13.58282 -13.39394 -13.23236 -13.12443 -13.08039 -12.67601 -12.66344 -12.47605 -12.42536 -12.09755 -12.00662 -11.79657 -11.60883 -11.52109 -11.01361 -10.84605 -10.69863 -9.81558 -9.73783 -8.86720 -7.82202 -5.16765 0.85529 1.47161 1.48690 1.51777 1.57047 2.04703 2.51668 3.36691 3.40582 3.57879 3.83438 3.86520 3.98616 3.99286 4.19314 4.22136 4.35068 4.37845 4.50522 4.55833 4.62734 4.68661 4.71727 4.77422 4.79942 4.82166 4.85844 4.90180 4.99439 5.06421 5.08253 5.15781 5.20989 5.45164 5.50618 5.53587 5.55893 5.66117 5.67436 5.77041 6.21585 6.35327 7.07539 7.10228 7.80624 8.49563 9.29819 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025203 B = 0.004800 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.719108 B = 5831.586027 C = 6405.457777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 C -0.191 4.191 4 C -0.101 4.101 5 C 0.555 3.445 6 O -0.588 6.588 7 N -0.601 5.601 8 C 0.122 3.878 9 C -0.122 4.122 10 C 0.158 3.842 11 H 0.023 0.977 12 C -0.109 4.109 13 H 0.061 0.939 14 C -0.121 4.121 15 C 0.181 3.819 16 N -0.615 5.615 17 C -0.229 4.229 18 H 0.089 0.911 19 C -0.070 4.070 20 N -0.955 5.955 21 Si 0.974 3.026 22 H -0.289 1.289 23 H -0.299 1.299 24 H -0.265 1.265 25 C 0.133 3.867 26 H 0.052 0.948 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.157 0.843 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.046 0.954 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.004 0.996 40 H 0.017 0.983 41 H 0.244 0.756 42 H 0.083 0.917 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.005 -15.955 -11.165 19.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.116 4.116 3 C -0.193 4.193 4 C -0.158 4.158 5 C 0.345 3.655 6 O -0.470 6.470 7 N -0.332 5.332 8 C -0.001 4.001 9 C -0.161 4.161 10 C 0.051 3.949 11 H 0.040 0.960 12 C -0.129 4.129 13 H 0.079 0.921 14 C -0.160 4.160 15 C 0.057 3.943 16 N -0.339 5.339 17 C -0.358 4.358 18 H 0.107 0.893 19 C -0.263 4.263 20 N -0.605 5.605 21 Si 0.803 3.197 22 H -0.216 1.216 23 H -0.226 1.226 24 H -0.190 1.190 25 C 0.011 3.989 26 H 0.071 0.929 27 H 0.110 0.890 28 H 0.086 0.914 29 H 0.174 0.826 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.065 0.935 33 H 0.101 0.899 34 H 0.125 0.875 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.023 0.977 40 H 0.035 0.965 41 H 0.053 0.947 42 H 0.102 0.898 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.069 -15.550 -11.477 19.356 hybrid contribution 0.423 0.851 1.198 1.529 sum -0.647 -14.699 -10.279 17.948 Atomic orbital electron populations 1.21057 0.92788 1.04119 1.01751 1.23626 0.96436 0.97144 0.94436 1.21503 0.97776 0.92038 1.08032 1.20681 0.88549 1.03076 1.03452 1.19163 0.77561 0.85979 0.82804 1.90747 1.60370 1.63085 1.32772 1.48397 1.57757 1.18991 1.08106 1.21818 1.02603 0.93613 0.82060 1.21817 0.99272 0.96307 0.98754 1.20858 0.96147 0.90373 0.87479 0.96007 1.22453 0.99158 0.95707 0.95587 0.92059 1.22570 1.00428 0.96761 0.96197 1.21305 0.96358 0.86852 0.89830 1.44488 1.73874 1.02683 1.12891 1.19423 1.32979 0.93436 0.89951 0.89342 1.25625 1.02983 0.95331 1.02319 1.70168 1.55156 0.98765 1.36382 0.85128 0.77765 0.77291 0.79493 1.21575 1.22571 1.18982 1.21487 0.96530 0.81803 0.99110 0.92935 0.88959 0.91371 0.82572 0.89841 0.88807 0.93509 0.89918 0.87481 0.90441 0.92774 0.90541 0.90266 0.97732 0.96482 0.94657 0.89836 0.89785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.16 71.24 0.65 -1.54 16 2 C -0.10 -1.51 9.48 24.52 0.23 -1.28 16 3 C -0.19 -4.03 3.85 -18.70 -0.07 -4.10 16 4 C -0.10 -1.77 10.02 71.24 0.71 -1.06 16 5 C 0.55 16.02 5.88 86.57 0.51 16.53 16 6 O -0.59 -21.65 16.48 -4.06 -0.07 -21.72 16 7 N -0.60 -16.49 3.00 -822.29 -2.47 -18.95 16 8 C 0.12 2.86 5.32 86.68 0.46 3.33 16 9 C -0.12 -3.86 5.48 30.43 0.17 -3.69 16 10 C 0.16 6.11 2.57 45.52 0.12 6.22 16 11 H 0.02 0.86 7.92 -2.39 -0.02 0.84 16 12 C -0.11 -3.81 2.86 -9.98 -0.03 -3.84 16 13 H 0.06 2.38 8.11 -2.39 -0.02 2.36 16 14 C -0.12 -4.47 6.54 31.63 0.21 -4.26 16 15 C 0.18 9.02 5.46 86.84 0.47 9.50 16 16 N -0.61 -30.78 3.35 -669.89 -2.24 -33.02 16 17 C -0.23 -12.41 9.88 84.03 0.83 -11.58 16 18 H 0.09 4.48 7.22 -2.91 -0.02 4.46 16 19 C -0.07 -3.95 5.49 84.86 0.47 -3.49 16 20 N -0.96 -57.76 10.43 21.65 0.23 -57.53 16 21 Si 0.97 45.27 29.55 68.60 2.03 47.30 16 22 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 23 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 25 C 0.13 3.94 5.94 85.89 0.51 4.45 16 26 H 0.05 1.03 8.09 -2.39 -0.02 1.01 16 27 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.07 1.13 6.87 -2.38 -0.02 1.11 16 29 H 0.16 1.43 8.06 -2.91 -0.02 1.40 16 30 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.09 1.19 8.10 -2.39 -0.02 1.17 16 32 H 0.05 1.00 8.08 -2.39 -0.02 0.98 16 33 H 0.08 1.71 7.81 -2.39 -0.02 1.69 16 34 H 0.11 2.04 5.96 -2.39 -0.01 2.02 16 35 H 0.08 2.43 7.62 -2.39 -0.02 2.41 16 36 H 0.05 1.85 8.11 -2.39 -0.02 1.83 16 37 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.08 2.62 8.12 -2.39 -0.02 2.60 16 39 H 0.00 0.25 7.77 -2.39 -0.02 0.23 16 40 H 0.02 0.96 7.20 -2.38 -0.02 0.94 16 41 H 0.24 14.46 8.31 -92.71 -0.77 13.69 16 42 H 0.08 2.61 7.03 -2.39 -0.02 2.60 16 43 H 0.08 2.26 8.08 -2.39 -0.02 2.24 16 Total: -1.00 -70.83 334.94 3.69 -67.14 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 0.97 Total: 11.61 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 5.24 Total: 5.18 kcal Atomic # 7 Polarization: -105.02 SS G_CDS: -4.48 Total: -109.51 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.07 Total: -21.72 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -70.83 3.69 -67.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036682121.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.210 kcal (2) G-P(sol) polarization free energy of solvation -70.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds