Wall clock time and date at job start Tue Mar 31 2020 01:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32993 * 119.99976 * 2 1 4 4 C 1.50701 * 119.99963 * 359.97438 * 3 2 1 5 5 C 1.47100 * 120.00007 * 180.02562 * 3 2 1 6 6 O 1.21615 * 120.00021 * 313.39355 * 5 3 2 7 7 N 1.34778 * 120.00033 * 133.39586 * 5 3 2 8 8 C 1.46604 * 119.68178 * 186.07639 * 7 5 3 9 9 C 1.54043 * 110.11173 * 131.78539 * 8 7 5 10 10 C 1.51513 * 107.31393 * 51.99223 * 9 8 7 11 11 H 1.08994 * 109.28267 * 52.53493 * 10 9 8 12 12 C 1.55365 * 107.27890 * 294.26782 * 10 9 8 13 13 H 1.09003 * 111.51193 * 309.08821 * 12 10 9 14 14 C 1.53740 * 100.22282 * 191.18565 * 12 10 9 15 15 C 1.55289 * 101.83846 * 39.09534 * 14 12 10 16 16 N 1.45471 * 117.35487 * 177.59979 * 10 9 8 17 17 C 1.36943 * 126.40216 * 328.69606 * 16 10 9 18 18 H 1.07993 * 120.00184 * 19.86190 * 17 16 10 19 19 C 1.38808 * 119.99781 * 199.87179 * 17 16 10 20 20 N 1.31622 * 120.00105 * 358.26322 * 19 17 16 21 21 Si 1.86806 * 120.00028 * 178.27037 * 19 17 16 22 22 H 1.48502 * 109.46877 * 94.76843 * 21 19 17 23 23 H 1.48494 * 109.47015 * 214.76556 * 21 19 17 24 24 H 1.48497 * 109.46796 * 334.76670 * 21 19 17 25 25 C 1.47711 * 119.68466 * 6.09647 * 7 5 3 26 26 H 1.09003 * 109.46829 * 60.00244 * 1 2 3 27 27 H 1.09000 * 109.47061 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46946 * 300.00467 * 1 2 3 29 29 H 1.08002 * 120.00363 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47097 * 295.85235 * 4 3 2 31 31 H 1.08998 * 109.46766 * 55.85797 * 4 3 2 32 32 H 1.09001 * 109.46921 * 175.85242 * 4 3 2 33 33 H 1.08998 * 109.25189 * 252.45354 * 8 7 5 34 34 H 1.08996 * 109.25621 * 11.89398 * 8 7 5 35 35 H 1.08999 * 110.86527 * 291.98829 * 9 8 7 36 36 H 1.09007 * 108.92794 * 170.90201 * 9 8 7 37 37 H 1.08993 * 110.95825 * 280.95600 * 14 12 10 38 38 H 1.08997 * 110.98758 * 157.23980 * 14 12 10 39 39 H 1.09010 * 109.92145 * 218.16878 * 15 14 12 40 40 H 1.09003 * 110.09044 * 96.96403 * 15 14 12 41 41 H 0.97003 * 119.99716 * 179.97438 * 20 19 17 42 42 H 1.09003 * 110.07439 * 112.84615 * 25 7 5 43 43 H 1.09007 * 110.16300 * 351.32275 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4184 2.4569 -0.0006 5 6 3.6430 1.1518 -0.0006 6 8 4.2513 0.4280 0.7644 7 7 4.3165 1.9539 -0.8488 8 6 5.7763 1.8528 -0.9387 9 6 6.2120 1.7745 -2.4141 10 6 5.5636 2.9369 -3.1380 11 1 5.7901 3.8622 -2.6084 12 6 4.0288 2.6972 -3.1142 13 1 3.7750 1.6966 -3.4642 14 6 3.5692 3.7718 -4.1130 15 6 4.6817 3.6985 -5.1940 16 7 5.8753 3.1032 -4.5492 17 6 7.0521 2.7719 -5.1661 18 1 7.7265 2.0684 -4.7006 19 6 7.3783 3.3404 -6.3897 20 7 6.5411 4.1717 -6.9732 21 14 9.0055 2.9257 -7.2082 22 1 8.8052 1.8146 -8.1730 23 1 9.5162 4.1200 -7.9278 24 1 9.9884 2.5127 -6.1745 25 6 3.5769 2.9267 -1.6785 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 2.0471 -0.9353 0.0004 30 1 0.8491 2.5472 -0.9256 31 1 0.7370 2.4832 0.8497 32 1 2.1244 3.2840 0.0738 33 1 6.2268 2.7258 -0.4664 34 1 6.1070 0.9532 -0.4196 35 1 5.8936 0.8339 -2.8635 36 1 7.2971 1.8633 -2.4676 37 1 3.5456 4.7554 -3.6440 38 1 2.5969 3.5206 -4.5367 39 1 4.9154 4.7002 -5.5549 40 1 4.3563 3.0715 -6.0241 41 1 6.7693 4.5692 -7.8281 42 1 3.8187 3.9432 -1.3683 43 1 2.5039 2.7550 -1.5922 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036682122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:13 Heat of formation + Delta-G solvation = 10.920758 kcal Electronic energy + Delta-G solvation = -22706.299510 eV Core-core repulsion = 19559.561911 eV Total energy + Delta-G solvation = -3146.737598 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.38702 -38.35845 -35.76186 -35.25140 -32.58249 -31.96479 -29.74880 -29.36630 -27.89836 -26.55187 -24.82017 -23.49840 -22.54101 -20.66283 -20.02122 -19.47279 -18.17266 -16.84098 -16.41272 -15.91298 -15.30631 -15.04557 -14.52157 -14.34803 -13.91403 -13.81017 -13.54054 -13.11296 -12.96596 -12.88926 -12.57972 -12.40071 -12.31781 -12.09776 -11.62685 -11.50498 -11.46775 -11.27574 -10.84400 -10.77234 -10.62465 -10.20515 -10.13253 -9.91701 -9.79173 -9.63532 -9.32225 -9.13352 -8.60676 -8.44556 -6.74703 -5.74867 -3.14149 1.51358 2.93323 3.23567 3.38280 3.44428 3.45897 4.46151 4.48508 4.78502 4.91482 5.01861 5.12790 5.22291 5.25291 5.32977 5.36825 5.44215 5.50424 5.55205 5.59388 5.63496 5.67686 5.77807 5.84948 5.88032 5.97576 6.12818 6.19957 6.26311 6.27291 6.40450 6.44643 6.49053 6.60652 6.65225 6.86837 7.07638 7.40287 7.52677 7.72777 7.76640 8.27043 8.27442 9.16763 9.80485 10.52550 11.36417 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029173 B = 0.004474 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.569081 B = 6256.445357 C = 6762.214305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.097 4.097 3 C -0.176 4.176 4 C -0.116 4.116 5 C 0.552 3.448 6 O -0.552 6.552 7 N -0.601 5.601 8 C 0.117 3.883 9 C -0.129 4.129 10 C 0.167 3.833 11 H 0.021 0.979 12 C -0.127 4.127 13 H 0.079 0.921 14 C -0.133 4.133 15 C 0.167 3.833 16 N -0.592 5.592 17 C -0.230 4.230 18 H 0.074 0.926 19 C -0.001 4.001 20 N -0.915 5.915 21 Si 0.907 3.093 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.107 3.893 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.117 0.883 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.028 0.972 41 H 0.252 0.748 42 H 0.071 0.929 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.289 -2.715 11.906 17.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.116 4.116 3 C -0.179 4.179 4 C -0.172 4.172 5 C 0.341 3.659 6 O -0.431 6.431 7 N -0.332 5.332 8 C -0.006 4.006 9 C -0.168 4.168 10 C 0.059 3.941 11 H 0.038 0.962 12 C -0.147 4.147 13 H 0.097 0.903 14 C -0.172 4.172 15 C 0.043 3.957 16 N -0.316 5.316 17 C -0.359 4.359 18 H 0.092 0.908 19 C -0.198 4.198 20 N -0.561 5.561 21 Si 0.737 3.263 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.205 1.205 25 C -0.016 4.016 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.135 0.865 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.046 0.954 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.802 -2.998 12.080 17.152 hybrid contribution 0.970 -0.175 -0.687 1.201 sum -10.832 -3.173 11.393 16.038 Atomic orbital electron populations 1.20907 0.92106 1.02798 1.02424 1.23307 0.96267 0.97216 0.94853 1.21385 0.92936 0.96860 1.06736 1.21008 0.99865 0.94096 1.02246 1.18560 0.87743 0.79454 0.80159 1.90765 1.70081 1.42286 1.39971 1.48241 1.07664 1.37181 1.40137 1.21692 0.78703 1.02572 0.97625 1.21905 1.01449 1.00247 0.93180 1.20640 0.91178 0.94563 0.87742 0.96201 1.22665 0.99029 1.00016 0.93038 0.90257 1.22667 0.99398 0.97275 0.97849 1.21655 0.83490 0.99245 0.91355 1.44104 1.12343 1.73675 1.01481 1.18952 0.94802 1.19559 1.02577 0.90780 1.24994 0.98075 0.98105 0.98623 1.69910 1.35279 1.33473 1.17466 0.86185 0.83596 0.77222 0.79293 1.21661 1.21620 1.20490 1.22241 0.97276 0.91832 0.90206 0.90839 0.91648 0.90985 0.86487 0.90459 0.91236 0.91151 0.91824 0.89602 0.91539 0.90681 0.92134 0.92210 0.91906 0.95351 0.93738 0.91088 0.88417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.92 9.15 36.01 0.33 -0.59 16 2 C -0.10 -1.04 9.86 -36.13 -0.36 -1.39 16 3 C -0.18 -2.11 5.22 -102.85 -0.54 -2.65 16 4 C -0.12 -1.02 7.09 36.01 0.26 -0.77 16 5 C 0.55 8.59 7.17 -12.66 -0.09 8.50 16 6 O -0.55 -10.38 16.34 5.26 0.09 -10.29 16 7 N -0.60 -9.07 2.99 -173.82 -0.52 -9.59 16 8 C 0.12 1.85 6.31 -3.44 -0.02 1.83 16 9 C -0.13 -2.33 5.37 -26.94 -0.14 -2.48 16 10 C 0.17 3.35 2.59 -67.98 -0.18 3.17 16 11 H 0.02 0.43 7.92 -51.93 -0.41 0.02 16 12 C -0.13 -2.13 2.84 -89.37 -0.25 -2.39 16 13 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 14 C -0.13 -2.30 6.54 -25.13 -0.16 -2.47 16 15 C 0.17 3.91 5.61 -1.92 -0.01 3.90 16 16 N -0.59 -14.69 3.34 -163.10 -0.55 -15.24 16 17 C -0.23 -6.30 9.85 -15.06 -0.15 -6.45 16 18 H 0.07 1.97 7.27 -52.49 -0.38 1.59 16 19 C 0.00 -0.02 5.48 -17.43 -0.10 -0.12 16 20 N -0.92 -26.53 10.77 55.49 0.60 -25.93 16 21 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 C 0.11 1.44 4.52 -3.76 -0.02 1.42 16 26 H 0.07 0.49 8.01 -51.93 -0.42 0.07 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.46 7.74 -51.93 -0.40 0.06 16 29 H 0.12 1.36 8.05 -52.49 -0.42 0.94 16 30 H 0.08 0.58 7.40 -51.93 -0.38 0.19 16 31 H 0.07 0.52 7.68 -51.93 -0.40 0.12 16 32 H 0.07 0.64 6.38 -51.93 -0.33 0.31 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.09 1.40 7.01 -51.93 -0.36 1.03 16 35 H 0.07 1.27 8.10 -51.93 -0.42 0.84 16 36 H 0.07 1.39 7.79 -51.92 -0.40 0.99 16 37 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 1.64 6.91 -51.92 -0.36 1.28 16 40 H 0.03 0.72 8.13 -51.93 -0.42 0.30 16 41 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 43 H 0.10 1.10 3.79 -51.93 -0.20 0.90 16 LS Contribution 331.13 15.07 4.99 4.99 Total: -1.00 -31.81 331.13 -8.83 -40.64 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -6.98 Total: -0.96 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -1.43 Total: -0.48 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.47 Total: -50.76 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.81 -8.83 -40.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036682122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.559 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds