Wall clock time and date at job start Tue Mar 31 2020 01:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32993 * 119.99976 * 2 1 4 4 C 1.50701 * 119.99963 * 359.97438 * 3 2 1 5 5 C 1.47100 * 120.00007 * 180.02562 * 3 2 1 6 6 O 1.21615 * 120.00021 * 313.39355 * 5 3 2 7 7 N 1.34778 * 120.00033 * 133.39586 * 5 3 2 8 8 C 1.46604 * 119.68178 * 186.07639 * 7 5 3 9 9 C 1.54043 * 110.11173 * 131.78539 * 8 7 5 10 10 C 1.51513 * 107.31393 * 51.99223 * 9 8 7 11 11 H 1.08994 * 109.28267 * 52.53493 * 10 9 8 12 12 C 1.55365 * 107.27890 * 294.26782 * 10 9 8 13 13 H 1.09003 * 111.51193 * 309.08821 * 12 10 9 14 14 C 1.53740 * 100.22282 * 191.18565 * 12 10 9 15 15 C 1.55289 * 101.83846 * 39.09534 * 14 12 10 16 16 N 1.45471 * 117.35487 * 177.59979 * 10 9 8 17 17 C 1.36943 * 126.40216 * 328.69606 * 16 10 9 18 18 H 1.07993 * 120.00184 * 19.86190 * 17 16 10 19 19 C 1.38808 * 119.99781 * 199.87179 * 17 16 10 20 20 N 1.31622 * 120.00105 * 358.26322 * 19 17 16 21 21 Si 1.86806 * 120.00028 * 178.27037 * 19 17 16 22 22 H 1.48502 * 109.46877 * 94.76843 * 21 19 17 23 23 H 1.48494 * 109.47015 * 214.76556 * 21 19 17 24 24 H 1.48497 * 109.46796 * 334.76670 * 21 19 17 25 25 C 1.47711 * 119.68466 * 6.09647 * 7 5 3 26 26 H 1.09003 * 109.46829 * 60.00244 * 1 2 3 27 27 H 1.09000 * 109.47061 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46946 * 300.00467 * 1 2 3 29 29 H 1.08002 * 120.00363 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47097 * 295.85235 * 4 3 2 31 31 H 1.08998 * 109.46766 * 55.85797 * 4 3 2 32 32 H 1.09001 * 109.46921 * 175.85242 * 4 3 2 33 33 H 1.08998 * 109.25189 * 252.45354 * 8 7 5 34 34 H 1.08996 * 109.25621 * 11.89398 * 8 7 5 35 35 H 1.08999 * 110.86527 * 291.98829 * 9 8 7 36 36 H 1.09007 * 108.92794 * 170.90201 * 9 8 7 37 37 H 1.08993 * 110.95825 * 280.95600 * 14 12 10 38 38 H 1.08997 * 110.98758 * 157.23980 * 14 12 10 39 39 H 1.09010 * 109.92145 * 218.16878 * 15 14 12 40 40 H 1.09003 * 110.09044 * 96.96403 * 15 14 12 41 41 H 0.97003 * 119.99716 * 179.97438 * 20 19 17 42 42 H 1.09003 * 110.07439 * 112.84615 * 25 7 5 43 43 H 1.09007 * 110.16300 * 351.32275 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4184 2.4569 -0.0006 5 6 3.6430 1.1518 -0.0006 6 8 4.2513 0.4280 0.7644 7 7 4.3165 1.9539 -0.8488 8 6 5.7763 1.8528 -0.9387 9 6 6.2120 1.7745 -2.4141 10 6 5.5636 2.9369 -3.1380 11 1 5.7901 3.8622 -2.6084 12 6 4.0288 2.6972 -3.1142 13 1 3.7750 1.6966 -3.4642 14 6 3.5692 3.7718 -4.1130 15 6 4.6817 3.6985 -5.1940 16 7 5.8753 3.1032 -4.5492 17 6 7.0521 2.7719 -5.1661 18 1 7.7265 2.0684 -4.7006 19 6 7.3783 3.3404 -6.3897 20 7 6.5411 4.1717 -6.9732 21 14 9.0055 2.9257 -7.2082 22 1 8.8052 1.8146 -8.1730 23 1 9.5162 4.1200 -7.9278 24 1 9.9884 2.5127 -6.1745 25 6 3.5769 2.9267 -1.6785 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 2.0471 -0.9353 0.0004 30 1 0.8491 2.5472 -0.9256 31 1 0.7370 2.4832 0.8497 32 1 2.1244 3.2840 0.0738 33 1 6.2268 2.7258 -0.4664 34 1 6.1070 0.9532 -0.4196 35 1 5.8936 0.8339 -2.8635 36 1 7.2971 1.8633 -2.4676 37 1 3.5456 4.7554 -3.6440 38 1 2.5969 3.5206 -4.5367 39 1 4.9154 4.7002 -5.5549 40 1 4.3563 3.0715 -6.0241 41 1 6.7693 4.5692 -7.8281 42 1 3.8187 3.9432 -1.3683 43 1 2.5039 2.7550 -1.5922 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036682122.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:13 Heat of formation + Delta-G solvation = -8.317370 kcal Electronic energy + Delta-G solvation = -22707.133738 eV Core-core repulsion = 19559.561911 eV Total energy + Delta-G solvation = -3147.571826 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.64341 -39.81081 -36.76548 -36.62812 -34.43258 -33.35743 -31.38593 -30.36091 -29.30100 -27.46773 -26.52799 -24.87475 -23.94601 -22.07709 -21.57138 -20.88685 -19.24649 -18.51224 -17.62946 -17.26374 -16.85768 -16.45357 -16.01936 -15.70792 -15.41625 -14.81287 -14.69469 -14.54510 -14.30669 -13.88235 -13.73913 -13.61972 -13.37292 -13.27500 -13.07438 -12.97053 -12.74870 -12.65845 -12.32533 -12.20588 -12.10108 -12.01420 -11.78516 -11.69880 -11.40482 -11.10158 -10.70946 -10.64035 -9.99687 -9.66062 -8.76736 -7.86245 -5.26835 0.61343 1.44363 1.44909 1.54329 1.79025 2.11287 2.48332 3.31345 3.43169 3.49710 3.80738 3.98123 4.02853 4.04098 4.17948 4.26451 4.34603 4.36288 4.46312 4.53668 4.64922 4.68462 4.76859 4.80218 4.82265 4.86014 4.92749 4.98376 5.03703 5.08908 5.15277 5.18131 5.19948 5.43034 5.50530 5.55378 5.57307 5.68669 5.72733 5.81457 6.25407 6.36944 7.08446 7.09259 7.78266 8.49935 9.23760 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029173 B = 0.004474 C = 0.004140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.569081 B = 6256.445357 C = 6762.214305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.090 4.090 3 C -0.196 4.196 4 C -0.114 4.114 5 C 0.546 3.454 6 O -0.594 6.594 7 N -0.603 5.603 8 C 0.125 3.875 9 C -0.119 4.119 10 C 0.155 3.845 11 H 0.019 0.981 12 C -0.110 4.110 13 H 0.066 0.934 14 C -0.114 4.114 15 C 0.167 3.833 16 N -0.614 5.614 17 C -0.240 4.240 18 H 0.074 0.926 19 C -0.057 4.057 20 N -0.943 5.943 21 Si 0.969 3.031 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.269 1.269 25 C 0.114 3.886 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.028 0.972 40 H -0.006 1.006 41 H 0.247 0.753 42 H 0.087 0.913 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.447 -2.465 13.337 19.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.109 4.109 3 C -0.198 4.198 4 C -0.170 4.170 5 C 0.337 3.663 6 O -0.476 6.476 7 N -0.333 5.333 8 C 0.002 3.998 9 C -0.158 4.158 10 C 0.048 3.952 11 H 0.036 0.964 12 C -0.131 4.131 13 H 0.085 0.915 14 C -0.152 4.152 15 C 0.043 3.957 16 N -0.338 5.338 17 C -0.370 4.370 18 H 0.092 0.908 19 C -0.251 4.251 20 N -0.591 5.591 21 Si 0.798 3.202 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.194 1.194 25 C -0.007 4.007 26 H 0.107 0.893 27 H 0.092 0.908 28 H 0.105 0.895 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.046 0.954 40 H 0.013 0.987 41 H 0.056 0.944 42 H 0.106 0.894 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.976 -2.748 13.535 19.649 hybrid contribution 1.657 -0.330 -1.110 2.022 sum -12.319 -3.078 12.425 17.765 Atomic orbital electron populations 1.20969 0.89157 1.03920 1.03745 1.23554 0.98311 0.96114 0.92958 1.21443 0.90679 0.98962 1.08757 1.21067 0.99924 0.91839 1.04170 1.19250 0.89412 0.78327 0.79269 1.90738 1.71328 1.43862 1.41684 1.48314 1.07216 1.37550 1.40267 1.21512 0.79888 1.02873 0.95557 1.21772 1.00718 0.98752 0.94564 1.20867 0.94081 0.94903 0.85370 0.96397 1.22527 0.96087 0.99201 0.95239 0.91520 1.22534 0.98201 0.98662 0.95840 1.21516 0.85194 0.96335 0.92692 1.44403 1.12163 1.73576 1.03677 1.19276 0.95790 1.19134 1.02752 0.90814 1.25753 1.01186 0.98636 0.99526 1.70113 1.36726 1.34753 1.17545 0.85205 0.80074 0.76652 0.78294 1.21598 1.21848 1.19389 1.22377 0.98891 0.92212 0.87186 0.89289 0.90830 0.89452 0.88402 0.88322 0.89398 0.91280 0.90571 0.90281 0.93014 0.91756 0.89986 0.89273 0.95366 0.98725 0.94355 0.89437 0.85131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 9.15 71.24 0.65 -0.66 16 2 C -0.09 -1.71 9.86 24.52 0.24 -1.46 16 3 C -0.20 -4.14 5.22 -18.70 -0.10 -4.24 16 4 C -0.11 -1.50 7.09 71.24 0.51 -0.99 16 5 C 0.55 16.23 7.17 86.57 0.62 16.85 16 6 O -0.59 -22.26 16.34 -4.08 -0.07 -22.33 16 7 N -0.60 -17.13 2.99 -822.11 -2.46 -19.60 16 8 C 0.12 3.88 6.31 86.71 0.55 4.43 16 9 C -0.12 -4.34 5.37 30.46 0.16 -4.18 16 10 C 0.15 6.16 2.59 45.51 0.12 6.28 16 11 H 0.02 0.75 7.92 -2.39 -0.02 0.73 16 12 C -0.11 -3.48 2.84 -9.98 -0.03 -3.51 16 13 H 0.07 2.31 8.10 -2.39 -0.02 2.29 16 14 C -0.11 -3.69 6.54 31.63 0.21 -3.49 16 15 C 0.17 7.98 5.61 86.85 0.49 8.47 16 16 N -0.61 -31.10 3.34 -669.93 -2.24 -33.34 16 17 C -0.24 -13.46 9.85 84.03 0.83 -12.63 16 18 H 0.07 4.02 7.27 -2.91 -0.02 4.00 16 19 C -0.06 -3.25 5.48 84.86 0.46 -2.79 16 20 N -0.94 -56.53 10.77 21.65 0.23 -56.30 16 21 Si 0.97 45.95 29.55 68.60 2.03 47.97 16 22 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 23 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 25 C 0.11 2.71 4.52 85.90 0.39 3.10 16 26 H 0.09 0.75 8.01 -2.39 -0.02 0.73 16 27 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.09 0.74 7.74 -2.39 -0.02 0.72 16 29 H 0.10 2.20 8.05 -2.91 -0.02 2.18 16 30 H 0.10 0.90 7.40 -2.39 -0.02 0.88 16 31 H 0.09 0.88 7.68 -2.39 -0.02 0.86 16 32 H 0.07 0.94 6.38 -2.39 -0.02 0.93 16 33 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.08 2.59 7.01 -2.39 -0.02 2.57 16 35 H 0.05 2.01 8.10 -2.39 -0.02 1.99 16 36 H 0.06 2.44 7.79 -2.38 -0.02 2.42 16 37 H 0.08 2.35 8.11 -2.39 -0.02 2.33 16 38 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.03 1.53 6.91 -2.38 -0.02 1.51 16 40 H -0.01 -0.30 8.13 -2.39 -0.02 -0.32 16 41 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 42 H 0.09 1.87 8.08 -2.39 -0.02 1.85 16 43 H 0.13 2.31 3.79 -2.38 -0.01 2.30 16 Total: -1.00 -72.57 331.13 3.57 -69.00 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 0.98 Total: 9.40 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 5.10 Total: 5.18 kcal Atomic # 7 Polarization: -104.76 SS G_CDS: -4.47 Total: -109.23 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.07 Total: -22.33 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Total: -72.57 3.57 -69.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036682122.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.681 kcal (2) G-P(sol) polarization free energy of solvation -72.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds