Wall clock time and date at job start Tue Mar 31 2020 01:02:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32991 * 120.00306 * 2 1 4 4 C 1.50700 * 119.99869 * 0.27663 * 3 2 1 5 5 C 1.47092 * 120.00015 * 180.27651 * 3 2 1 6 6 O 1.21614 * 120.00371 * 22.01047 * 5 3 2 7 7 N 1.34779 * 119.99919 * 202.00864 * 5 3 2 8 8 C 1.46940 * 120.44667 * 7.53044 * 7 5 3 9 9 C 1.53594 * 108.53288 * 125.75072 * 8 7 5 10 10 H 1.08996 * 110.59821 * 172.16963 * 9 8 7 11 11 C 1.53372 * 108.68934 * 294.36170 * 9 8 7 12 12 C 1.52920 * 109.75513 * 61.19407 * 11 9 8 13 13 C 1.53013 * 110.29229 * 59.37051 * 12 11 9 14 14 C 1.53370 * 109.25815 * 300.28825 * 13 12 11 15 15 H 1.09002 * 110.59879 * 177.53201 * 14 13 12 16 16 C 1.46953 * 120.44230 * 187.25786 * 7 5 3 17 17 N 1.47561 * 107.76629 * 51.14639 * 9 8 7 18 18 C 1.36943 * 121.61034 * 120.50378 * 17 9 8 19 19 H 1.07998 * 119.99562 * 341.76539 * 18 17 9 20 20 C 1.38814 * 120.00216 * 161.77135 * 18 17 9 21 21 N 1.31621 * 119.99789 * 328.01160 * 20 18 17 22 22 Si 1.86794 * 120.00041 * 148.00914 * 20 18 17 23 23 H 1.48504 * 109.47010 * 95.00097 * 22 20 18 24 24 H 1.48493 * 109.47164 * 214.99498 * 22 20 18 25 25 H 1.48497 * 109.47246 * 334.99849 * 22 20 18 26 26 H 1.08998 * 109.47089 * 59.72282 * 1 2 3 27 27 H 1.08999 * 109.47251 * 179.72597 * 1 2 3 28 28 H 1.09002 * 109.46821 * 299.72573 * 1 2 3 29 29 H 1.08007 * 119.99436 * 180.28043 * 2 1 3 30 30 H 1.09001 * 109.47070 * 82.15231 * 4 3 2 31 31 H 1.08997 * 109.47266 * 202.15443 * 4 3 2 32 32 H 1.09006 * 109.47266 * 322.15401 * 4 3 2 33 33 H 1.08996 * 109.63191 * 245.46664 * 8 7 5 34 34 H 1.09012 * 109.62437 * 5.84783 * 8 7 5 35 35 H 1.08995 * 109.50624 * 180.22956 * 11 9 8 36 36 H 1.09005 * 109.50487 * 300.35682 * 11 9 8 37 37 H 1.08997 * 108.46059 * 299.56082 * 12 11 9 38 38 H 1.08997 * 109.86837 * 180.02562 * 12 11 9 39 39 H 1.09000 * 109.50604 * 180.35213 * 13 12 11 40 40 H 1.09008 * 109.54186 * 60.24080 * 13 12 11 41 41 H 1.09006 * 109.62317 * 353.95090 * 16 7 5 42 42 H 1.08993 * 109.62394 * 114.51573 * 16 7 5 43 43 H 0.96993 * 119.99859 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1721 1.1517 0.0000 4 6 1.4186 2.4568 0.0063 5 6 3.6430 1.1516 -0.0061 6 8 4.2494 0.1761 -0.4057 7 7 4.3187 2.2327 0.4311 8 6 3.6061 3.3490 1.0676 9 6 4.2453 3.6182 2.4381 10 1 3.8351 4.5257 2.8809 11 6 3.9997 2.4037 3.3419 12 6 4.6529 1.1636 2.7302 13 6 6.1588 1.3818 2.5693 14 6 6.4000 2.5887 1.6541 15 1 7.4670 2.7907 1.5591 16 6 5.7788 2.3082 0.2829 17 7 5.7013 3.7500 2.2378 18 6 6.3718 4.8947 2.5775 19 1 5.8280 5.8168 2.7203 20 6 7.7504 4.8698 2.7382 21 7 8.3411 3.7826 3.1870 22 14 8.7671 6.3793 2.3176 23 1 8.9939 7.1816 3.5465 24 1 10.0743 5.9547 1.7555 25 1 8.0414 7.2017 1.3164 26 1 -0.3633 0.5181 -0.8875 27 1 -0.3634 -1.0276 -0.0049 28 1 -0.3633 0.5096 0.8925 29 1 2.0470 -0.9354 -0.0046 30 1 1.1197 2.6989 1.0262 31 1 2.0596 3.2483 -0.3820 32 1 0.5315 2.3673 -0.6208 33 1 3.6885 4.2392 0.4441 34 1 2.5556 3.0874 1.1954 35 1 4.4449 2.5824 4.3206 36 1 2.9272 2.2435 3.4530 37 1 4.2060 0.9850 1.7523 38 1 4.4791 0.2992 3.3710 39 1 6.6100 0.4936 2.1270 40 1 6.6063 1.5700 3.5452 41 1 6.1572 1.3611 -0.1019 42 1 6.0358 3.1144 -0.4040 43 1 9.3044 3.7651 3.2990 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039541435.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:01 Heat of formation + Delta-G solvation = 47.874768 kcal Electronic energy + Delta-G solvation = -23909.351084 eV Core-core repulsion = 20764.215931 eV Total energy + Delta-G solvation = -3145.135152 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.75151 -37.85485 -35.64161 -34.01737 -32.75484 -31.94800 -30.49420 -29.32520 -27.31398 -25.93688 -25.35476 -23.60838 -21.85087 -21.27470 -20.36161 -18.39355 -18.20874 -16.88289 -16.01343 -15.71228 -15.10241 -14.64681 -14.13561 -13.96474 -13.78931 -13.57635 -13.36553 -13.03623 -12.93868 -12.78137 -12.58916 -12.24840 -12.08984 -11.98052 -11.51801 -11.33313 -11.29800 -11.15227 -10.68746 -10.55988 -10.35929 -10.10103 -9.92921 -9.91433 -9.61940 -9.41395 -9.13920 -8.98896 -8.44892 -7.82727 -6.73826 -5.87570 -3.12075 1.55879 3.35951 3.41841 3.46358 3.49279 3.59551 4.46559 4.74334 4.93530 5.06912 5.13374 5.23467 5.28511 5.38389 5.56373 5.60673 5.69495 5.72933 5.75012 5.82594 5.85277 5.93908 5.94506 6.08956 6.18800 6.31493 6.40752 6.46814 6.49402 6.52419 6.61037 6.63739 6.78534 6.91758 6.95193 7.08980 7.16290 7.47957 7.57416 7.76863 7.96949 8.28425 8.59930 9.09522 9.77615 10.36178 11.19860 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030654 B = 0.005732 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.192908 B = 4883.999874 C = 5018.402449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.091 4.091 3 C -0.179 4.179 4 C -0.122 4.122 5 C 0.550 3.450 6 O -0.558 6.558 7 N -0.583 5.583 8 C 0.064 3.936 9 C 0.151 3.849 10 H 0.077 0.923 11 C -0.123 4.123 12 C -0.137 4.137 13 C -0.113 4.113 14 C 0.172 3.828 15 H 0.115 0.885 16 C 0.094 3.906 17 N -0.579 5.579 18 C -0.254 4.254 19 H 0.071 0.929 20 C 0.004 3.996 21 N -0.883 5.883 22 Si 0.886 3.114 23 H -0.290 1.290 24 H -0.290 1.290 25 H -0.280 1.280 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.122 0.878 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.056 0.944 36 H 0.040 0.960 37 H 0.078 0.922 38 H 0.030 0.970 39 H 0.038 0.962 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.164 -3.597 -4.682 15.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.111 4.111 3 C -0.182 4.182 4 C -0.177 4.177 5 C 0.341 3.659 6 O -0.439 6.439 7 N -0.314 5.314 8 C -0.060 4.060 9 C 0.043 3.957 10 H 0.096 0.904 11 C -0.163 4.163 12 C -0.175 4.175 13 C -0.152 4.152 14 C 0.065 3.935 15 H 0.132 0.868 16 C -0.029 4.029 17 N -0.300 5.300 18 C -0.383 4.383 19 H 0.089 0.911 20 C -0.195 4.195 21 N -0.526 5.526 22 Si 0.715 3.285 23 H -0.217 1.217 24 H -0.216 1.216 25 H -0.205 1.205 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.140 0.860 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.122 0.878 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.096 0.904 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.078 0.922 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.623 -4.056 -4.847 15.018 hybrid contribution 0.780 0.760 0.037 1.090 sum -12.843 -3.296 -4.809 14.104 Atomic orbital electron populations 1.20931 0.92363 1.02650 1.02351 1.23426 0.96002 0.97755 0.93890 1.21490 0.93312 0.96549 1.06866 1.21223 0.99774 0.94927 1.01815 1.18197 0.87515 0.82702 0.77475 1.90752 1.70093 1.33409 1.49603 1.47992 1.08383 1.17967 1.57068 1.23360 0.97687 0.88804 0.96136 1.21218 0.86941 0.95941 0.91606 0.90446 1.21935 0.97633 0.96721 0.99968 1.21999 0.97813 0.96036 1.01630 1.21769 0.94330 0.97399 1.01666 1.21118 0.98715 0.86072 0.87635 0.86760 1.22349 0.78615 1.01300 1.00674 1.44575 1.01052 1.13893 1.70473 1.19107 0.89771 0.86539 1.42872 0.91084 1.24700 0.97679 0.96785 1.00308 1.70199 1.09567 1.28923 1.43940 0.86536 0.80021 0.83348 0.78591 1.21708 1.21576 1.20542 0.90976 0.91735 0.90948 0.86044 0.90205 0.90498 0.91720 0.91842 0.87798 0.92523 0.94098 0.90405 0.95072 0.94325 0.91282 0.90192 0.92159 0.93633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.05 9.01 36.01 0.32 -0.72 16 2 C -0.09 -1.11 9.82 -36.13 -0.35 -1.46 16 3 C -0.18 -2.47 5.69 -102.85 -0.59 -3.05 16 4 C -0.12 -1.27 7.33 36.01 0.26 -1.01 16 5 C 0.55 9.88 4.89 -12.67 -0.06 9.82 16 6 O -0.56 -11.79 15.74 5.26 0.08 -11.71 16 7 N -0.58 -10.61 1.66 -173.92 -0.29 -10.90 16 8 C 0.06 1.04 4.11 -3.49 -0.01 1.03 16 9 C 0.15 2.91 3.62 -66.85 -0.24 2.67 16 10 H 0.08 1.44 8.01 -51.93 -0.42 1.02 16 11 C -0.12 -2.32 5.56 -26.58 -0.15 -2.46 16 12 C -0.14 -2.73 5.56 -26.77 -0.15 -2.88 16 13 C -0.11 -2.52 5.61 -26.53 -0.15 -2.66 16 14 C 0.17 3.95 2.79 -67.09 -0.19 3.77 16 15 H 0.11 2.98 5.67 -51.93 -0.29 2.69 16 16 C 0.09 1.93 5.87 -3.73 -0.02 1.90 16 17 N -0.58 -13.53 2.56 -155.71 -0.40 -13.92 16 18 C -0.25 -6.61 9.67 -15.06 -0.15 -6.75 16 19 H 0.07 1.81 8.00 -52.49 -0.42 1.39 16 20 C 0.00 0.12 4.72 -17.43 -0.08 0.04 16 21 N -0.88 -24.54 11.45 55.49 0.64 -23.90 16 22 Si 0.89 20.92 29.66 -169.99 -5.04 15.88 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H 0.07 0.53 7.42 -51.93 -0.39 0.14 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 29 H 0.12 1.62 7.66 -52.48 -0.40 1.22 16 30 H 0.08 0.74 6.92 -51.93 -0.36 0.38 16 31 H 0.08 0.86 5.94 -51.93 -0.31 0.55 16 32 H 0.06 0.55 6.81 -51.93 -0.35 0.19 16 33 H 0.06 1.02 7.98 -51.93 -0.41 0.61 16 34 H 0.10 1.38 3.07 -57.26 -0.18 1.20 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 1.53 2.59 -51.94 -0.13 1.40 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.07 1.73 8.14 -51.92 -0.42 1.30 16 41 H 0.08 1.67 6.98 -51.93 -0.36 1.31 16 42 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 43 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 317.10 15.07 4.78 4.78 Total: -1.00 -29.95 317.10 -8.33 -38.28 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -6.54 Total: 3.27 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -1.55 Total: -1.78 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: -0.05 Total: -48.73 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.08 Total: -11.71 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.04 Total: 15.88 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.95 -8.33 -38.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039541435.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.154 kcal (2) G-P(sol) polarization free energy of solvation -29.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds