Wall clock time and date at job start Tue Mar 31 2020 01:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32991 * 120.00306 * 2 1 4 4 C 1.50700 * 119.99869 * 0.27663 * 3 2 1 5 5 C 1.47092 * 120.00015 * 180.27651 * 3 2 1 6 6 O 1.21614 * 120.00371 * 22.01047 * 5 3 2 7 7 N 1.34779 * 119.99919 * 202.00864 * 5 3 2 8 8 C 1.46940 * 120.44667 * 7.53044 * 7 5 3 9 9 C 1.53594 * 108.53288 * 125.75072 * 8 7 5 10 10 H 1.08996 * 110.59821 * 172.16963 * 9 8 7 11 11 C 1.53372 * 108.68934 * 294.36170 * 9 8 7 12 12 C 1.52920 * 109.75513 * 61.19407 * 11 9 8 13 13 C 1.53013 * 110.29229 * 59.37051 * 12 11 9 14 14 C 1.53370 * 109.25815 * 300.28825 * 13 12 11 15 15 H 1.09002 * 110.59879 * 177.53201 * 14 13 12 16 16 C 1.46953 * 120.44230 * 187.25786 * 7 5 3 17 17 N 1.47561 * 107.76629 * 51.14639 * 9 8 7 18 18 C 1.36943 * 121.61034 * 120.50378 * 17 9 8 19 19 H 1.07998 * 119.99562 * 341.76539 * 18 17 9 20 20 C 1.38814 * 120.00216 * 161.77135 * 18 17 9 21 21 N 1.31621 * 119.99789 * 328.01160 * 20 18 17 22 22 Si 1.86794 * 120.00041 * 148.00914 * 20 18 17 23 23 H 1.48504 * 109.47010 * 95.00097 * 22 20 18 24 24 H 1.48493 * 109.47164 * 214.99498 * 22 20 18 25 25 H 1.48497 * 109.47246 * 334.99849 * 22 20 18 26 26 H 1.08998 * 109.47089 * 59.72282 * 1 2 3 27 27 H 1.08999 * 109.47251 * 179.72597 * 1 2 3 28 28 H 1.09002 * 109.46821 * 299.72573 * 1 2 3 29 29 H 1.08007 * 119.99436 * 180.28043 * 2 1 3 30 30 H 1.09001 * 109.47070 * 82.15231 * 4 3 2 31 31 H 1.08997 * 109.47266 * 202.15443 * 4 3 2 32 32 H 1.09006 * 109.47266 * 322.15401 * 4 3 2 33 33 H 1.08996 * 109.63191 * 245.46664 * 8 7 5 34 34 H 1.09012 * 109.62437 * 5.84783 * 8 7 5 35 35 H 1.08995 * 109.50624 * 180.22956 * 11 9 8 36 36 H 1.09005 * 109.50487 * 300.35682 * 11 9 8 37 37 H 1.08997 * 108.46059 * 299.56082 * 12 11 9 38 38 H 1.08997 * 109.86837 * 180.02562 * 12 11 9 39 39 H 1.09000 * 109.50604 * 180.35213 * 13 12 11 40 40 H 1.09008 * 109.54186 * 60.24080 * 13 12 11 41 41 H 1.09006 * 109.62317 * 353.95090 * 16 7 5 42 42 H 1.08993 * 109.62394 * 114.51573 * 16 7 5 43 43 H 0.96993 * 119.99859 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1721 1.1517 0.0000 4 6 1.4186 2.4568 0.0063 5 6 3.6430 1.1516 -0.0061 6 8 4.2494 0.1761 -0.4057 7 7 4.3187 2.2327 0.4311 8 6 3.6061 3.3490 1.0676 9 6 4.2453 3.6182 2.4381 10 1 3.8351 4.5257 2.8809 11 6 3.9997 2.4037 3.3419 12 6 4.6529 1.1636 2.7302 13 6 6.1588 1.3818 2.5693 14 6 6.4000 2.5887 1.6541 15 1 7.4670 2.7907 1.5591 16 6 5.7788 2.3082 0.2829 17 7 5.7013 3.7500 2.2378 18 6 6.3718 4.8947 2.5775 19 1 5.8280 5.8168 2.7203 20 6 7.7504 4.8698 2.7382 21 7 8.3411 3.7826 3.1870 22 14 8.7671 6.3793 2.3176 23 1 8.9939 7.1816 3.5465 24 1 10.0743 5.9547 1.7555 25 1 8.0414 7.2017 1.3164 26 1 -0.3633 0.5181 -0.8875 27 1 -0.3634 -1.0276 -0.0049 28 1 -0.3633 0.5096 0.8925 29 1 2.0470 -0.9354 -0.0046 30 1 1.1197 2.6989 1.0262 31 1 2.0596 3.2483 -0.3820 32 1 0.5315 2.3673 -0.6208 33 1 3.6885 4.2392 0.4441 34 1 2.5556 3.0874 1.1954 35 1 4.4449 2.5824 4.3206 36 1 2.9272 2.2435 3.4530 37 1 4.2060 0.9850 1.7523 38 1 4.4791 0.2992 3.3710 39 1 6.6100 0.4936 2.1270 40 1 6.6063 1.5700 3.5452 41 1 6.1572 1.3611 -0.1019 42 1 6.0358 3.1144 -0.4040 43 1 9.3044 3.7651 3.2990 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039541435.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:00 Heat of formation + Delta-G solvation = 31.195776 kcal Electronic energy + Delta-G solvation = -23910.074339 eV Core-core repulsion = 20764.215931 eV Total energy + Delta-G solvation = -3145.858408 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.22275 -39.38156 -36.72463 -35.61563 -34.49081 -33.54156 -32.29478 -30.29179 -28.80935 -27.18970 -26.80397 -25.26674 -23.44719 -22.93250 -21.75667 -20.05921 -19.49336 -18.40418 -17.45787 -17.09168 -16.57184 -16.45004 -15.83137 -15.39789 -15.17250 -14.99149 -14.64797 -14.47702 -14.13841 -14.12583 -13.72604 -13.61761 -13.37329 -13.23072 -13.20018 -13.01438 -12.83130 -12.44335 -12.25043 -12.12744 -11.96504 -11.73558 -11.66647 -11.64055 -11.21190 -11.13647 -10.60453 -10.38855 -9.95581 -9.44074 -8.58187 -7.87082 -5.13291 0.50349 1.45962 1.51987 1.60005 2.06781 2.26241 2.54844 3.22429 3.50291 3.61104 4.05438 4.09799 4.15585 4.22321 4.25625 4.31093 4.37839 4.40093 4.56647 4.69199 4.73154 4.77656 4.78855 4.82311 4.86979 4.95796 4.99596 5.03675 5.11524 5.15389 5.21884 5.26605 5.30935 5.40172 5.50804 5.56673 5.63789 5.71759 5.72020 5.85070 6.32921 6.58318 7.11247 7.20294 7.86012 8.42358 9.17802 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030654 B = 0.005732 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.192908 B = 4883.999874 C = 5018.402449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.073 4.073 3 C -0.202 4.202 4 C -0.120 4.120 5 C 0.544 3.456 6 O -0.600 6.600 7 N -0.585 5.585 8 C 0.072 3.928 9 C 0.141 3.859 10 H 0.089 0.911 11 C -0.116 4.116 12 C -0.134 4.134 13 C -0.106 4.106 14 C 0.173 3.827 15 H 0.077 0.923 16 C 0.105 3.895 17 N -0.593 5.593 18 C -0.255 4.255 19 H 0.076 0.924 20 C -0.046 4.046 21 N -0.916 5.916 22 Si 0.946 3.054 23 H -0.291 1.291 24 H -0.299 1.299 25 H -0.271 1.271 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.147 0.853 35 H 0.029 0.971 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.036 0.964 39 H 0.031 0.969 40 H 0.033 0.967 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.152 -2.881 -5.363 19.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.093 4.093 3 C -0.205 4.205 4 C -0.176 4.176 5 C 0.338 3.662 6 O -0.484 6.484 7 N -0.316 5.316 8 C -0.051 4.051 9 C 0.034 3.966 10 H 0.107 0.893 11 C -0.155 4.155 12 C -0.172 4.172 13 C -0.145 4.145 14 C 0.065 3.935 15 H 0.095 0.905 16 C -0.019 4.019 17 N -0.314 5.314 18 C -0.385 4.385 19 H 0.094 0.906 20 C -0.242 4.242 21 N -0.562 5.562 22 Si 0.775 3.225 23 H -0.219 1.219 24 H -0.226 1.226 25 H -0.196 1.196 26 H 0.108 0.892 27 H 0.094 0.906 28 H 0.109 0.891 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.088 0.912 34 H 0.164 0.836 35 H 0.048 0.952 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -17.663 -3.318 -5.531 18.804 hybrid contribution 1.967 0.430 0.243 2.028 sum -15.696 -2.888 -5.288 16.813 Atomic orbital electron populations 1.21023 0.88880 1.04083 1.03916 1.23711 0.98352 0.96367 0.90853 1.21456 0.90418 0.98907 1.09723 1.21250 1.00227 0.92502 1.03603 1.19012 0.89509 0.81522 0.76174 1.90730 1.71459 1.34872 1.51307 1.48023 1.07163 1.18926 1.57490 1.23518 0.99193 0.88502 0.93854 1.21561 0.84563 0.96730 0.93761 0.89256 1.21872 0.99791 0.95641 0.98158 1.21995 0.95691 0.97094 1.02442 1.21641 0.96363 0.97016 0.99483 1.20893 0.97115 0.86318 0.89134 0.90490 1.21961 0.80717 1.00528 0.98721 1.44748 1.02871 1.13247 1.70571 1.19444 0.90172 0.87664 1.41209 0.90579 1.25335 0.98759 0.98963 1.01152 1.70327 1.09064 1.30839 1.45944 0.85592 0.78238 0.80564 0.78103 1.21852 1.22606 1.19649 0.89189 0.90633 0.89060 0.88162 0.88157 0.91147 0.88878 0.91200 0.83644 0.95171 0.89846 0.89481 0.94557 0.94986 0.94859 0.91312 0.92342 0.94421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 9.01 71.24 0.64 -0.76 16 2 C -0.07 -1.52 9.82 24.52 0.24 -1.28 16 3 C -0.20 -4.86 5.69 -18.71 -0.11 -4.97 16 4 C -0.12 -1.88 7.33 71.24 0.52 -1.36 16 5 C 0.54 18.77 4.89 86.57 0.42 19.19 16 6 O -0.60 -25.44 15.74 -4.08 -0.06 -25.50 16 7 N -0.59 -20.58 1.66 -822.42 -1.36 -21.95 16 8 C 0.07 2.11 4.11 86.50 0.36 2.47 16 9 C 0.14 5.14 3.62 45.11 0.16 5.31 16 10 H 0.09 3.07 8.01 -2.39 -0.02 3.05 16 11 C -0.12 -4.12 5.56 30.69 0.17 -3.95 16 12 C -0.13 -5.29 5.56 30.57 0.17 -5.12 16 13 C -0.11 -4.94 5.61 30.72 0.17 -4.77 16 14 C 0.17 8.26 2.79 44.95 0.13 8.39 16 15 H 0.08 4.27 5.67 -2.39 -0.01 4.26 16 16 C 0.11 4.41 5.87 86.33 0.51 4.91 16 17 N -0.59 -27.86 2.56 -646.54 -1.66 -29.51 16 18 C -0.26 -13.35 9.67 84.03 0.81 -12.54 16 19 H 0.08 3.83 8.00 -2.91 -0.02 3.81 16 20 C -0.05 -2.50 4.72 84.86 0.40 -2.10 16 21 N -0.92 -53.29 11.45 21.65 0.25 -53.05 16 22 Si 0.95 44.09 29.66 68.60 2.03 46.12 16 23 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 24 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 25 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 26 H 0.09 0.80 7.42 -2.39 -0.02 0.78 16 27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.09 0.80 8.10 -2.39 -0.02 0.78 16 29 H 0.10 2.52 7.66 -2.91 -0.02 2.49 16 30 H 0.10 1.18 6.92 -2.39 -0.02 1.16 16 31 H 0.07 1.23 5.94 -2.39 -0.01 1.22 16 32 H 0.09 0.99 6.81 -2.38 -0.02 0.98 16 33 H 0.07 2.02 7.98 -2.39 -0.02 2.00 16 34 H 0.15 3.13 3.07 -7.40 -0.02 3.11 16 35 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.08 2.29 8.14 -2.38 -0.02 2.28 16 37 H 0.09 3.33 2.59 -2.40 -0.01 3.32 16 38 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.03 1.75 8.14 -2.38 -0.02 1.73 16 41 H 0.07 3.00 6.98 -2.38 -0.02 2.98 16 42 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -68.68 317.10 4.78 -63.89 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.99 Total: 16.57 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 4.60 Total: 3.43 kcal Atomic # 7 Polarization: -101.73 SS G_CDS: -2.77 Total: -104.50 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.06 Total: -25.50 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -68.68 4.78 -63.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039541435.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.087 kcal (2) G-P(sol) polarization free energy of solvation -68.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds