Wall clock time and date at job start Tue Mar 31 2020 00:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32996 * 119.99749 * 2 1 4 4 C 1.50708 * 119.99861 * 180.02562 * 3 2 1 5 5 C 1.47101 * 120.00143 * 0.02562 * 3 2 1 6 6 O 1.21612 * 119.99934 * 261.54279 * 5 3 2 7 7 N 1.34771 * 119.99749 * 81.54551 * 5 3 2 8 8 C 1.47562 * 125.67655 * 5.11920 * 7 5 3 9 9 C 1.55435 * 104.88209 * 156.02861 * 8 7 5 10 10 C 1.53666 * 101.31148 * 35.82671 * 9 8 7 11 11 C 1.53643 * 111.41961 * 204.77052 * 10 9 8 12 12 C 1.55184 * 101.42247 * 272.73203 * 11 10 9 13 13 N 1.47557 * 105.00427 * 324.51123 * 12 11 10 14 14 C 1.36947 * 125.67193 * 203.82483 * 13 12 11 15 15 H 1.07995 * 119.99915 * 180.02562 * 14 13 12 16 16 C 1.38811 * 119.99883 * 0.04217 * 14 13 12 17 17 N 1.31618 * 120.00102 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99653 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47547 * 59.99640 * 18 16 14 20 20 H 1.48506 * 109.46746 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47068 * 299.99506 * 18 16 14 22 22 C 1.47402 * 108.65666 * 23.85900 * 13 12 11 23 23 C 1.47406 * 125.67255 * 185.42262 * 7 5 3 24 24 H 1.09006 * 109.46941 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47751 * 59.99555 * 1 2 3 26 26 H 1.08999 * 109.47107 * 299.99681 * 1 2 3 27 27 H 1.07999 * 120.00389 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47144 * 84.96574 * 4 3 2 29 29 H 1.09004 * 109.46962 * 204.96776 * 4 3 2 30 30 H 1.09001 * 109.47136 * 324.96620 * 4 3 2 31 31 H 1.09003 * 110.33309 * 275.01562 * 8 7 5 32 32 H 1.08994 * 110.33436 * 37.25109 * 8 7 5 33 33 H 1.08992 * 111.25897 * 277.75733 * 9 8 7 34 34 H 1.09004 * 110.95147 * 153.76140 * 9 8 7 35 35 H 1.09001 * 111.04145 * 30.77224 * 11 10 9 36 36 H 1.08998 * 111.03313 * 154.69907 * 11 10 9 37 37 H 1.09003 * 110.33664 * 205.62710 * 12 11 10 38 38 H 1.08998 * 110.42276 * 83.43588 * 12 11 10 39 39 H 0.97002 * 120.00002 * 180.02562 * 17 16 14 40 40 H 1.08996 * 109.98486 * 238.53991 * 22 13 12 41 41 H 1.08990 * 109.98499 * 117.23279 * 22 13 12 42 42 H 1.09004 * 109.98686 * 301.45732 * 23 7 5 43 43 H 1.08992 * 109.98899 * 62.72701 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6790 1.1518 -0.0006 5 6 1.4364 2.4257 0.0006 6 8 1.2661 3.0300 -1.0410 7 7 0.9513 2.9232 1.1554 8 6 1.1744 2.3543 2.4985 9 6 0.9782 3.5475 3.4751 10 6 -0.1507 4.3240 2.7793 11 6 -0.1328 5.8100 3.1693 12 6 -0.9957 5.7996 4.4591 13 7 -2.0323 4.7777 4.2170 14 6 -3.2559 4.7206 4.8294 15 1 -3.9471 3.9286 4.5820 16 6 -3.6078 5.6810 5.7678 17 7 -2.7653 6.6462 6.0694 18 14 -5.2765 5.6027 6.6037 19 1 -5.4018 4.3190 7.3397 20 1 -5.4062 6.7340 7.5569 21 1 -6.3479 5.6925 5.5794 22 6 -1.5315 3.8281 3.2069 23 6 0.1044 4.1226 1.2862 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 0.5138 0.8900 27 1 2.0470 -0.9353 -0.0004 28 1 4.0419 1.0619 -1.0244 29 1 4.0424 2.0834 0.4333 30 1 4.0426 0.3102 0.5890 31 1 0.4458 1.5699 2.7034 32 1 2.1879 1.9616 2.5799 33 1 1.8822 4.1522 3.5469 34 1 0.6643 3.1985 4.4588 35 1 0.8821 6.1470 3.3803 36 1 -0.5939 6.4232 2.3951 37 1 -1.4552 6.7756 4.6153 38 1 -0.3878 5.5255 5.3212 39 1 -3.0111 7.3171 6.7255 40 1 -2.2028 3.8090 2.3484 41 1 -1.4517 2.8312 3.6402 42 1 0.6214 4.9903 0.8763 43 1 -0.8399 3.9707 0.7635 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041185499.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:59 Heat of formation + Delta-G solvation = 6.146558 kcal Electronic energy + Delta-G solvation = -22512.093722 eV Core-core repulsion = 19365.149098 eV Total energy + Delta-G solvation = -3146.944623 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.39016 -38.58631 -35.63049 -35.36617 -32.64788 -30.43924 -30.30987 -29.37386 -28.37520 -25.90567 -24.96982 -23.89900 -22.71784 -21.48096 -20.33606 -18.93559 -17.96158 -16.82963 -16.40048 -16.05834 -15.27909 -14.83550 -14.62113 -14.34020 -13.91079 -13.81863 -13.64745 -13.08348 -12.97548 -12.78457 -12.54915 -12.36817 -12.32246 -11.89183 -11.88310 -11.70442 -11.52233 -11.37886 -11.18660 -10.91747 -10.76956 -10.24152 -10.06402 -9.99203 -9.83385 -9.75245 -9.48371 -9.08541 -8.65562 -8.55688 -6.84516 -5.66304 -3.07790 1.62752 2.63832 3.11009 3.39847 3.44248 3.45386 4.39837 4.47914 4.68154 4.73169 4.89563 4.99341 5.07712 5.22929 5.33245 5.36700 5.41701 5.47135 5.48955 5.52225 5.57753 5.71034 5.79900 5.81548 5.84434 5.96833 6.03048 6.15277 6.20134 6.26980 6.32461 6.34921 6.42327 6.53779 6.63740 6.73197 6.82701 7.49730 7.57478 7.60921 7.84564 8.17561 8.34712 9.20877 9.81545 10.46712 11.37591 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031682 B = 0.004084 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.576412 B = 6854.949025 C = 7205.570720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.115 4.115 3 C -0.166 4.166 4 C -0.102 4.102 5 C 0.571 3.429 6 O -0.544 6.544 7 N -0.610 5.610 8 C 0.102 3.898 9 C -0.113 4.113 10 C -0.082 4.082 11 C -0.131 4.131 12 C 0.155 3.845 13 N -0.604 5.604 14 C -0.223 4.223 15 H 0.076 0.924 16 C -0.010 4.010 17 N -0.922 5.922 18 Si 0.914 3.086 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.152 3.848 23 C 0.124 3.876 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.124 0.876 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.105 0.895 38 H 0.013 0.987 39 H 0.252 0.748 40 H 0.025 0.975 41 H 0.023 0.977 42 H 0.069 0.931 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.581 -11.061 -8.019 17.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.134 4.134 3 C -0.169 4.169 4 C -0.159 4.159 5 C 0.360 3.640 6 O -0.422 6.422 7 N -0.343 5.343 8 C -0.020 4.020 9 C -0.151 4.151 10 C -0.083 4.083 11 C -0.170 4.170 12 C 0.030 3.970 13 N -0.330 5.330 14 C -0.352 4.352 15 H 0.094 0.906 16 C -0.205 4.205 17 N -0.571 5.571 18 Si 0.744 3.256 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.212 1.212 22 C 0.026 3.974 23 C 0.001 3.999 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.142 0.858 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.123 0.877 38 H 0.031 0.969 39 H 0.063 0.937 40 H 0.042 0.958 41 H 0.041 0.959 42 H 0.088 0.912 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.380 -10.640 -8.476 17.736 hybrid contribution -0.843 -0.154 0.503 0.994 sum 10.537 -10.794 -7.973 17.062 Atomic orbital electron populations 1.20992 0.92614 1.02860 1.02945 1.23284 0.96412 0.96636 0.97029 1.21444 0.96868 0.92900 1.05683 1.20644 0.89872 1.02773 1.02634 1.18127 0.78540 0.84938 0.82417 1.90803 1.59441 1.60605 1.31313 1.48715 1.50816 1.28421 1.06396 1.22484 1.01085 0.96953 0.81501 1.22679 0.98381 0.95529 0.98526 1.21548 0.96353 0.98012 0.92359 1.22871 1.00297 0.92669 1.01148 1.21960 0.88090 0.96799 0.90127 1.44611 1.14927 1.27844 1.45600 1.19026 0.90670 1.09027 1.16444 0.90607 1.24768 0.98471 0.97675 0.99626 1.69788 1.34675 1.16221 1.36404 0.86165 0.83376 0.76977 0.79047 1.21248 1.21569 1.21171 1.21120 0.90546 0.93206 0.92504 1.21919 0.94308 0.87138 0.96489 0.91417 0.91188 0.90856 0.85846 0.90902 0.91748 0.91024 0.91219 0.90882 0.90712 0.89214 0.92010 0.91852 0.87733 0.96898 0.93692 0.95750 0.95922 0.91222 0.91250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.16 36.00 0.33 -1.08 16 2 C -0.11 -1.12 9.97 -36.13 -0.36 -1.48 16 3 C -0.17 -1.90 4.71 -102.84 -0.48 -2.39 16 4 C -0.10 -0.90 10.02 36.01 0.36 -0.54 16 5 C 0.57 8.59 6.05 -12.67 -0.08 8.51 16 6 O -0.54 -10.28 17.44 5.27 0.09 -10.19 16 7 N -0.61 -8.70 3.34 -172.09 -0.57 -9.28 16 8 C 0.10 1.24 6.58 -2.17 -0.01 1.23 16 9 C -0.11 -1.58 5.87 -25.09 -0.15 -1.72 16 10 C -0.08 -1.36 0.61 -154.02 -0.09 -1.45 16 11 C -0.13 -2.39 5.93 -25.24 -0.15 -2.54 16 12 C 0.15 3.63 5.83 -2.31 -0.01 3.62 16 13 N -0.60 -15.05 3.41 -170.41 -0.58 -15.63 16 14 C -0.22 -6.13 10.28 -15.06 -0.15 -6.29 16 15 H 0.08 2.02 7.83 -52.49 -0.41 1.60 16 16 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 17 N -0.92 -26.48 10.09 55.49 0.56 -25.92 16 18 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 C 0.15 3.06 6.39 -3.64 -0.02 3.04 16 23 C 0.12 1.95 6.14 -3.64 -0.02 1.93 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 26 H 0.07 0.82 7.50 -51.93 -0.39 0.43 16 27 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 30 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 31 H 0.07 0.82 7.58 -51.93 -0.39 0.43 16 32 H 0.07 0.74 7.79 -51.93 -0.40 0.34 16 33 H 0.07 0.97 7.82 -51.93 -0.41 0.56 16 34 H 0.09 1.33 7.94 -51.93 -0.41 0.92 16 35 H 0.06 1.00 7.78 -51.93 -0.40 0.60 16 36 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 37 H 0.10 2.80 5.89 -51.93 -0.31 2.49 16 38 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.02 0.51 7.44 -51.93 -0.39 0.12 16 41 H 0.02 0.45 7.78 -51.93 -0.40 0.05 16 42 H 0.07 1.11 7.86 -51.93 -0.41 0.71 16 43 H 0.07 1.16 7.42 -51.93 -0.39 0.77 16 LS Contribution 341.96 15.07 5.15 5.15 Total: -1.00 -31.51 341.96 -8.54 -40.04 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -7.22 Total: -1.46 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -0.94 Total: 0.47 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: -0.60 Total: -50.83 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.51 -8.54 -40.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041185499.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.188 kcal (2) G-P(sol) polarization free energy of solvation -31.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds