Wall clock time and date at job start Tue Mar 31 2020 00:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32996 * 119.99749 * 2 1 4 4 C 1.50708 * 119.99861 * 180.02562 * 3 2 1 5 5 C 1.47101 * 120.00143 * 0.02562 * 3 2 1 6 6 O 1.21612 * 119.99934 * 261.54279 * 5 3 2 7 7 N 1.34771 * 119.99749 * 81.54551 * 5 3 2 8 8 C 1.47562 * 125.67655 * 5.11920 * 7 5 3 9 9 C 1.55435 * 104.88209 * 156.02861 * 8 7 5 10 10 C 1.53666 * 101.31148 * 35.82671 * 9 8 7 11 11 C 1.53643 * 111.41961 * 204.77052 * 10 9 8 12 12 C 1.55184 * 101.42247 * 272.73203 * 11 10 9 13 13 N 1.47557 * 105.00427 * 324.51123 * 12 11 10 14 14 C 1.36947 * 125.67193 * 203.82483 * 13 12 11 15 15 H 1.07995 * 119.99915 * 180.02562 * 14 13 12 16 16 C 1.38811 * 119.99883 * 0.04217 * 14 13 12 17 17 N 1.31618 * 120.00102 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99653 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47547 * 59.99640 * 18 16 14 20 20 H 1.48506 * 109.46746 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47068 * 299.99506 * 18 16 14 22 22 C 1.47402 * 108.65666 * 23.85900 * 13 12 11 23 23 C 1.47406 * 125.67255 * 185.42262 * 7 5 3 24 24 H 1.09006 * 109.46941 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47751 * 59.99555 * 1 2 3 26 26 H 1.08999 * 109.47107 * 299.99681 * 1 2 3 27 27 H 1.07999 * 120.00389 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47144 * 84.96574 * 4 3 2 29 29 H 1.09004 * 109.46962 * 204.96776 * 4 3 2 30 30 H 1.09001 * 109.47136 * 324.96620 * 4 3 2 31 31 H 1.09003 * 110.33309 * 275.01562 * 8 7 5 32 32 H 1.08994 * 110.33436 * 37.25109 * 8 7 5 33 33 H 1.08992 * 111.25897 * 277.75733 * 9 8 7 34 34 H 1.09004 * 110.95147 * 153.76140 * 9 8 7 35 35 H 1.09001 * 111.04145 * 30.77224 * 11 10 9 36 36 H 1.08998 * 111.03313 * 154.69907 * 11 10 9 37 37 H 1.09003 * 110.33664 * 205.62710 * 12 11 10 38 38 H 1.08998 * 110.42276 * 83.43588 * 12 11 10 39 39 H 0.97002 * 120.00002 * 180.02562 * 17 16 14 40 40 H 1.08996 * 109.98486 * 238.53991 * 22 13 12 41 41 H 1.08990 * 109.98499 * 117.23279 * 22 13 12 42 42 H 1.09004 * 109.98686 * 301.45732 * 23 7 5 43 43 H 1.08992 * 109.98899 * 62.72701 * 23 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6790 1.1518 -0.0006 5 6 1.4364 2.4257 0.0006 6 8 1.2661 3.0300 -1.0410 7 7 0.9513 2.9232 1.1554 8 6 1.1744 2.3543 2.4985 9 6 0.9782 3.5475 3.4751 10 6 -0.1507 4.3240 2.7793 11 6 -0.1328 5.8100 3.1693 12 6 -0.9957 5.7996 4.4591 13 7 -2.0323 4.7777 4.2170 14 6 -3.2559 4.7206 4.8294 15 1 -3.9471 3.9286 4.5820 16 6 -3.6078 5.6810 5.7678 17 7 -2.7653 6.6462 6.0694 18 14 -5.2765 5.6027 6.6037 19 1 -5.4018 4.3190 7.3397 20 1 -5.4062 6.7340 7.5569 21 1 -6.3479 5.6925 5.5794 22 6 -1.5315 3.8281 3.2069 23 6 0.1044 4.1226 1.2862 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 0.5138 0.8900 27 1 2.0470 -0.9353 -0.0004 28 1 4.0419 1.0619 -1.0244 29 1 4.0424 2.0834 0.4333 30 1 4.0426 0.3102 0.5890 31 1 0.4458 1.5699 2.7034 32 1 2.1879 1.9616 2.5799 33 1 1.8822 4.1522 3.5469 34 1 0.6643 3.1985 4.4588 35 1 0.8821 6.1470 3.3803 36 1 -0.5939 6.4232 2.3951 37 1 -1.4552 6.7756 4.6153 38 1 -0.3878 5.5255 5.3212 39 1 -3.0111 7.3171 6.7255 40 1 -2.2028 3.8090 2.3484 41 1 -1.4517 2.8312 3.6402 42 1 0.6214 4.9903 0.8763 43 1 -0.8399 3.9707 0.7635 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041185499.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:59 Heat of formation + Delta-G solvation = -12.499672 kcal Electronic energy + Delta-G solvation = -22512.902283 eV Core-core repulsion = 19365.149098 eV Total energy + Delta-G solvation = -3147.753185 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.62349 -39.93752 -37.17447 -36.28371 -34.43701 -32.00621 -31.13154 -30.78187 -29.88977 -27.55648 -26.15570 -25.11744 -24.02647 -22.53717 -22.17914 -20.28556 -19.20124 -18.68182 -17.55799 -17.16553 -16.82206 -16.24031 -15.95892 -15.63797 -15.60659 -14.96715 -14.52233 -14.22183 -14.11839 -13.97652 -13.85923 -13.72464 -13.49433 -13.25423 -13.12170 -12.94906 -12.80441 -12.67962 -12.67167 -12.44448 -12.39480 -12.05508 -11.77027 -11.54440 -11.49571 -11.23869 -10.92146 -10.71063 -9.88322 -9.74878 -8.86960 -7.76170 -5.19964 0.82135 1.47415 1.50046 1.51722 1.56451 2.01056 2.50347 3.28306 3.38862 3.53666 3.62125 3.70325 3.85927 3.98126 4.22009 4.24309 4.31181 4.34251 4.55110 4.57645 4.63394 4.64137 4.72210 4.74513 4.80646 4.82100 4.85452 4.91454 4.99754 5.03785 5.06675 5.15882 5.19643 5.29037 5.32167 5.47330 5.48610 5.66091 5.66430 5.83817 6.32250 6.45928 7.02963 7.12266 7.79192 8.43388 9.25405 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031682 B = 0.004084 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.576412 B = 6854.949025 C = 7205.570720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.097 4.097 3 C -0.186 4.186 4 C -0.098 4.098 5 C 0.568 3.432 6 O -0.592 6.592 7 N -0.608 5.608 8 C 0.108 3.892 9 C -0.108 4.108 10 C -0.071 4.071 11 C -0.117 4.117 12 C 0.159 3.841 13 N -0.625 5.625 14 C -0.241 4.241 15 H 0.078 0.922 16 C -0.064 4.064 17 N -0.947 5.947 18 Si 0.978 3.022 19 H -0.277 1.277 20 H -0.293 1.293 21 H -0.280 1.280 22 C 0.152 3.848 23 C 0.129 3.871 24 H 0.091 0.909 25 H 0.048 0.952 26 H 0.062 0.938 27 H 0.160 0.840 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.058 0.942 37 H 0.068 0.932 38 H -0.004 1.004 39 H 0.247 0.753 40 H 0.016 0.984 41 H 0.031 0.969 42 H 0.068 0.932 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.998 -13.372 -8.117 20.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 C -0.188 4.188 4 C -0.155 4.155 5 C 0.359 3.641 6 O -0.474 6.474 7 N -0.341 5.341 8 C -0.013 4.013 9 C -0.146 4.146 10 C -0.072 4.072 11 C -0.156 4.156 12 C 0.034 3.966 13 N -0.351 5.351 14 C -0.370 4.370 15 H 0.096 0.904 16 C -0.256 4.256 17 N -0.597 5.597 18 Si 0.806 3.194 19 H -0.203 1.203 20 H -0.219 1.219 21 H -0.206 1.206 22 C 0.027 3.973 23 C 0.006 3.994 24 H 0.109 0.891 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.178 0.822 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.014 0.986 39 H 0.057 0.943 40 H 0.034 0.966 41 H 0.049 0.951 42 H 0.087 0.913 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.810 -12.986 -8.572 20.154 hybrid contribution -1.344 0.545 0.511 1.537 sum 11.466 -12.441 -8.060 18.741 Atomic orbital electron populations 1.21031 0.93500 1.03926 1.01344 1.23587 0.95921 0.97458 0.94558 1.21509 0.98109 0.91255 1.07972 1.20682 0.87773 1.03726 1.03278 1.18835 0.77940 0.85784 0.81585 1.90773 1.61316 1.62308 1.32975 1.48773 1.50103 1.27821 1.07354 1.22578 1.03169 0.96109 0.79490 1.22662 0.97628 0.96022 0.98263 1.21372 0.95506 0.96930 0.93369 1.22722 1.00601 0.94065 0.98219 1.21721 0.88084 0.94632 0.92117 1.44895 1.14703 1.29281 1.46247 1.19393 0.91909 1.09034 1.16618 0.90412 1.25574 1.01881 0.97572 1.00590 1.70044 1.36180 1.16714 1.36743 0.85166 0.79415 0.76915 0.77907 1.20342 1.21917 1.20596 1.21239 0.92257 0.92775 0.91056 1.21684 0.94141 0.88156 0.95380 0.89051 0.93333 0.91975 0.82233 0.90797 0.92375 0.88101 0.90582 0.87770 0.89022 0.89904 0.89258 0.92303 0.91415 0.98592 0.94344 0.96604 0.95114 0.91335 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.16 71.23 0.65 -1.95 16 2 C -0.10 -1.55 9.97 24.52 0.24 -1.31 16 3 C -0.19 -3.75 4.71 -18.70 -0.09 -3.84 16 4 C -0.10 -1.40 10.02 71.24 0.71 -0.68 16 5 C 0.57 16.40 6.05 86.57 0.52 16.92 16 6 O -0.59 -22.48 17.44 -4.07 -0.07 -22.55 16 7 N -0.61 -16.42 3.34 -816.63 -2.73 -19.15 16 8 C 0.11 2.31 6.58 87.01 0.57 2.89 16 9 C -0.11 -2.76 5.87 31.66 0.19 -2.58 16 10 C -0.07 -2.29 0.61 -51.86 -0.03 -2.32 16 11 C -0.12 -4.25 5.93 31.56 0.19 -4.06 16 12 C 0.16 7.65 5.83 86.93 0.51 8.16 16 13 N -0.62 -31.74 3.41 -693.07 -2.36 -34.11 16 14 C -0.24 -13.43 10.28 84.03 0.86 -12.57 16 15 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 16 C -0.06 -3.58 5.49 84.86 0.47 -3.11 16 17 N -0.95 -55.92 10.09 21.65 0.22 -55.70 16 18 Si 0.98 45.41 29.55 68.60 2.03 47.44 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 20 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 22 C 0.15 6.12 6.39 86.15 0.55 6.67 16 23 C 0.13 4.01 6.14 86.14 0.53 4.54 16 24 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 25 H 0.05 1.11 8.09 -2.39 -0.02 1.09 16 26 H 0.06 1.29 7.50 -2.39 -0.02 1.27 16 27 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 0.90 8.08 -2.39 -0.02 0.88 16 30 H 0.10 0.85 8.10 -2.39 -0.02 0.83 16 31 H 0.08 1.57 7.58 -2.39 -0.02 1.55 16 32 H 0.10 1.66 7.79 -2.39 -0.02 1.64 16 33 H 0.09 2.08 7.82 -2.39 -0.02 2.06 16 34 H 0.08 2.29 7.94 -2.39 -0.02 2.27 16 35 H 0.09 2.74 7.78 -2.39 -0.02 2.73 16 36 H 0.06 2.17 8.08 -2.39 -0.02 2.15 16 37 H 0.07 3.78 5.89 -2.39 -0.01 3.76 16 38 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 39 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 40 H 0.02 0.67 7.44 -2.39 -0.02 0.65 16 41 H 0.03 1.20 7.78 -2.39 -0.02 1.18 16 42 H 0.07 2.16 7.86 -2.39 -0.02 2.14 16 43 H 0.05 1.86 7.42 -2.39 -0.02 1.84 16 Total: -1.00 -70.74 341.96 3.93 -66.81 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 0.97 Total: 10.49 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 5.88 Total: 6.77 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -4.87 Total: -108.95 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.07 Total: -22.55 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -70.74 3.93 -66.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041185499.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.310 kcal (2) G-P(sol) polarization free energy of solvation -70.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds