Wall clock time and date at job start Tue Mar 31 2020 01:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32992 * 120.00516 * 2 1 4 4 C 1.50695 * 120.00516 * 180.02562 * 3 2 1 5 5 C 1.47099 * 119.99963 * 0.02562 * 3 2 1 6 6 O 1.21615 * 120.00584 * 100.11981 * 5 3 2 7 7 N 1.34781 * 120.00183 * 280.13027 * 5 3 2 8 8 C 1.44787 * 120.17652 * 355.57058 * 7 5 3 9 9 C 1.51517 * 112.22877 * 264.53341 * 8 7 5 10 10 C 1.51309 * 113.25194 * 285.36734 * 9 8 7 11 11 H 1.09001 * 111.31593 * 186.09982 * 10 9 8 12 12 C 1.54715 * 106.48559 * 307.66686 * 10 9 8 13 13 C 1.52651 * 104.14851 * 88.80428 * 12 10 9 14 14 C 1.50871 * 106.06071 * 12.09416 * 13 12 10 15 15 H 1.09003 * 106.52244 * 121.64164 * 14 13 12 16 16 C 1.49812 * 120.18371 * 175.55764 * 7 5 3 17 17 N 1.48062 * 109.33462 * 7.27191 * 14 13 12 18 18 C 1.36938 * 127.84453 * 154.84773 * 17 14 13 19 19 H 1.07996 * 120.00409 * 180.02562 * 18 17 14 20 20 C 1.38808 * 119.99531 * 0.02562 * 18 17 14 21 21 N 1.31620 * 120.00592 * 359.97438 * 20 18 17 22 22 Si 1.86812 * 120.00009 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46778 * 59.99889 * 22 20 18 24 24 H 1.48494 * 109.47293 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46979 * 300.00474 * 22 20 18 26 26 H 1.08997 * 109.47659 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47127 * 299.99817 * 1 2 3 28 28 H 1.09003 * 109.46998 * 59.99319 * 1 2 3 29 29 H 1.08009 * 120.00019 * 180.02562 * 2 1 3 30 30 H 1.09006 * 109.47641 * 275.24361 * 4 3 2 31 31 H 1.09004 * 109.47201 * 35.24088 * 4 3 2 32 32 H 1.09002 * 109.47688 * 155.24495 * 4 3 2 33 33 H 1.09001 * 108.93304 * 25.24357 * 8 7 5 34 34 H 1.09000 * 108.93383 * 143.82584 * 8 7 5 35 35 H 1.08996 * 108.72239 * 46.34280 * 9 8 7 36 36 H 1.08999 * 108.72241 * 164.51624 * 9 8 7 37 37 H 1.09000 * 110.45243 * 207.84067 * 12 10 9 38 38 H 1.09009 * 110.45042 * 330.26414 * 12 10 9 39 39 H 1.09006 * 110.64555 * 252.49898 * 13 12 10 40 40 H 1.09000 * 109.16367 * 130.91079 * 13 12 10 41 41 H 1.09005 * 109.54753 * 30.84715 * 16 7 5 42 42 H 1.09008 * 109.62074 * 270.61700 * 16 7 5 43 43 H 0.96996 * 120.00357 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6790 1.1517 -0.0006 5 6 1.4366 2.4257 0.0006 6 8 1.2932 3.0447 1.0375 7 7 0.9215 2.9070 -1.1481 8 6 1.1707 2.2237 -2.4001 9 6 2.3451 2.8158 -3.1523 10 6 2.0278 4.1427 -3.8066 11 1 2.8562 4.4876 -4.4254 12 6 0.7486 3.9223 -4.6486 13 6 -0.3923 4.2151 -3.6776 14 6 0.2417 4.8642 -2.4722 15 1 -0.2322 5.8394 -2.3601 16 6 0.0877 4.1516 -1.1365 17 7 1.6710 5.1292 -2.7531 18 6 2.4770 6.0789 -2.1842 19 1 3.5105 6.1617 -2.4867 20 6 1.9657 6.9351 -1.2187 21 7 0.7061 6.8346 -0.8503 22 14 3.0653 8.2303 -0.4420 23 1 3.5762 9.1427 -1.4964 24 1 2.2852 9.0106 0.5518 25 1 4.2085 7.5674 0.2354 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 2.0470 -0.9354 -0.0004 30 1 4.0428 1.0575 1.0226 31 1 4.0421 0.3125 -0.5939 32 1 4.0422 2.0850 -0.4308 33 1 1.3756 1.1730 -2.1949 34 1 0.2798 2.2931 -3.0243 35 1 3.1712 2.9578 -2.4556 36 1 2.6565 2.1124 -3.9246 37 1 0.7252 4.6110 -5.4931 38 1 0.6955 2.8910 -4.9976 39 1 -0.8971 3.2933 -3.3885 40 1 -1.0965 4.9005 -4.1493 41 1 0.4223 4.8072 -0.3325 42 1 -0.9591 3.8895 -0.9816 43 1 0.3489 7.4326 -0.1754 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045748895.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:29 Heat of formation + Delta-G solvation = 21.995134 kcal Electronic energy + Delta-G solvation = -24083.096601 eV Core-core repulsion = 20936.839223 eV Total energy + Delta-G solvation = -3146.257377 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.02315 -38.19996 -35.00913 -33.92728 -32.97945 -31.48537 -30.00951 -29.45725 -27.28740 -25.85365 -24.66520 -23.77994 -22.64484 -20.88116 -19.32455 -19.19154 -17.25570 -16.96996 -15.86385 -15.38775 -14.97283 -14.72723 -14.58319 -13.96496 -13.61305 -13.41288 -13.34963 -12.72728 -12.66196 -12.41874 -12.22305 -12.03924 -11.80492 -11.57818 -11.41037 -11.27503 -11.19960 -11.18635 -10.82106 -10.77692 -10.71993 -10.19495 -9.91969 -9.65812 -9.53036 -9.39769 -9.03478 -8.61093 -8.56268 -7.66590 -6.85177 -5.66779 -3.04744 2.05578 3.34939 3.43767 3.48999 3.50129 3.92580 4.50293 4.96664 5.11792 5.26654 5.33795 5.36077 5.47764 5.57920 5.62274 5.66332 5.72994 5.74256 5.81968 5.85679 5.94137 5.98003 6.05588 6.15910 6.17687 6.27178 6.31110 6.50075 6.51026 6.58242 6.64491 6.73904 6.82721 6.84796 7.02574 7.09335 7.31984 7.53842 7.70554 7.90921 8.29814 8.35037 8.97667 9.20276 9.80230 10.52475 11.39775 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016662 B = 0.008260 C = 0.006855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.084225 B = 3388.979461 C = 4083.873121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.142 4.142 3 C -0.145 4.145 4 C -0.104 4.104 5 C 0.549 3.451 6 O -0.546 6.546 7 N -0.583 5.583 8 C 0.108 3.892 9 C -0.148 4.148 10 C 0.151 3.849 11 H 0.060 0.940 12 C -0.131 4.131 13 C -0.124 4.124 14 C 0.143 3.857 15 H 0.102 0.898 16 C 0.126 3.874 17 N -0.579 5.579 18 C -0.211 4.211 19 H 0.077 0.923 20 C -0.008 4.008 21 N -0.919 5.919 22 Si 0.914 3.086 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.287 1.287 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.118 0.882 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.126 0.874 42 H 0.030 0.970 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.488 -12.938 -5.063 13.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.161 4.161 3 C -0.148 4.148 4 C -0.161 4.161 5 C 0.335 3.665 6 O -0.425 6.425 7 N -0.315 5.315 8 C -0.017 4.017 9 C -0.189 4.189 10 C 0.043 3.957 11 H 0.078 0.922 12 C -0.170 4.170 13 C -0.162 4.162 14 C 0.036 3.964 15 H 0.120 0.880 16 C 0.005 3.995 17 N -0.301 5.301 18 C -0.339 4.339 19 H 0.095 0.905 20 C -0.203 4.203 21 N -0.567 5.567 22 Si 0.744 3.256 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.214 1.214 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.135 0.865 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.143 0.857 42 H 0.048 0.952 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.572 -12.333 -4.349 13.090 hybrid contribution 0.678 0.514 0.400 0.940 sum 0.106 -11.819 -3.949 12.462 Atomic orbital electron populations 1.20906 0.92955 1.02018 1.02753 1.23114 0.96145 0.96469 1.00393 1.21682 0.96902 0.93870 1.02314 1.20665 0.90414 1.02819 1.02247 1.18406 0.78856 0.84949 0.84240 1.90773 1.59934 1.59587 1.32214 1.48440 1.50423 1.27340 1.05275 1.21002 0.99269 0.94923 0.86466 1.22032 0.98729 0.98734 0.99437 1.21126 0.94965 0.89221 0.90391 0.92151 1.22413 0.96714 0.99848 0.98033 1.21693 0.97650 0.99656 0.97225 1.20564 0.86547 0.99903 0.89364 0.88042 1.23200 0.90343 0.83077 1.02879 1.44934 1.06949 1.35942 1.42325 1.18904 0.92307 1.06744 1.15938 0.90528 1.24673 0.96535 0.99859 0.99267 1.69680 1.12509 1.40060 1.34463 0.86163 0.79416 0.81249 0.78726 1.21397 1.21570 1.21385 0.92015 0.91455 0.91241 0.86454 0.91146 0.91478 0.91334 0.92019 0.90410 0.92381 0.92928 0.92431 0.92247 0.92334 0.92487 0.85660 0.95205 0.93552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 9.13 36.00 0.33 -1.35 16 2 C -0.14 -1.91 9.06 -36.13 -0.33 -2.24 16 3 C -0.14 -2.39 4.22 -102.85 -0.43 -2.82 16 4 C -0.10 -1.50 10.02 36.00 0.36 -1.14 16 5 C 0.55 11.67 5.90 -12.66 -0.07 11.60 16 6 O -0.55 -14.19 16.74 5.26 0.09 -14.10 16 7 N -0.58 -11.84 2.77 -175.06 -0.49 -12.33 16 8 C 0.11 1.78 4.48 -5.71 -0.03 1.76 16 9 C -0.15 -2.53 5.01 -28.33 -0.14 -2.68 16 10 C 0.15 2.89 4.08 -66.68 -0.27 2.62 16 11 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 12 C -0.13 -2.12 5.99 -26.01 -0.16 -2.28 16 13 C -0.12 -2.19 5.64 -27.98 -0.16 -2.35 16 14 C 0.14 3.20 1.99 -68.56 -0.14 3.06 16 15 H 0.10 2.65 6.09 -51.93 -0.32 2.34 16 16 C 0.13 2.91 5.73 -2.62 -0.02 2.89 16 17 N -0.58 -13.85 2.69 -156.95 -0.42 -14.28 16 18 C -0.21 -5.71 10.40 -15.06 -0.16 -5.86 16 19 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 20 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 21 N -0.92 -25.99 8.20 55.49 0.46 -25.54 16 22 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.99 8.09 -51.93 -0.42 0.57 16 28 H 0.07 0.93 7.07 -51.93 -0.37 0.57 16 29 H 0.12 1.25 8.06 -52.48 -0.42 0.83 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 32 H 0.07 1.12 7.97 -51.93 -0.41 0.70 16 33 H 0.06 0.90 5.52 -51.93 -0.29 0.61 16 34 H 0.08 1.22 3.91 -51.93 -0.20 1.01 16 35 H 0.06 1.13 8.03 -51.93 -0.42 0.71 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.80 7.39 -51.92 -0.38 0.42 16 39 H 0.06 0.93 6.12 -51.93 -0.32 0.61 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.13 3.52 5.36 -51.93 -0.28 3.24 16 42 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 323.27 15.07 4.87 4.87 Total: -1.00 -31.12 323.27 -8.57 -39.69 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -6.75 Total: 3.25 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -1.30 Total: 0.89 kcal Atomic # 7 Polarization: -51.69 SS G_CDS: -0.45 Total: -52.14 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: 0.09 Total: -14.10 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.12 -8.57 -39.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045748895.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.684 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds