Wall clock time and date at job start Tue Mar 31 2020 01:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32992 * 120.00516 * 2 1 4 4 C 1.50695 * 120.00516 * 180.02562 * 3 2 1 5 5 C 1.47099 * 119.99963 * 0.02562 * 3 2 1 6 6 O 1.21615 * 120.00584 * 100.11981 * 5 3 2 7 7 N 1.34781 * 120.00183 * 280.13027 * 5 3 2 8 8 C 1.44787 * 120.17652 * 355.57058 * 7 5 3 9 9 C 1.51517 * 112.22877 * 264.53341 * 8 7 5 10 10 C 1.51309 * 113.25194 * 285.36734 * 9 8 7 11 11 H 1.09001 * 111.31593 * 186.09982 * 10 9 8 12 12 C 1.54715 * 106.48559 * 307.66686 * 10 9 8 13 13 C 1.52651 * 104.14851 * 88.80428 * 12 10 9 14 14 C 1.50871 * 106.06071 * 12.09416 * 13 12 10 15 15 H 1.09003 * 106.52244 * 121.64164 * 14 13 12 16 16 C 1.49812 * 120.18371 * 175.55764 * 7 5 3 17 17 N 1.48062 * 109.33462 * 7.27191 * 14 13 12 18 18 C 1.36938 * 127.84453 * 154.84773 * 17 14 13 19 19 H 1.07996 * 120.00409 * 180.02562 * 18 17 14 20 20 C 1.38808 * 119.99531 * 0.02562 * 18 17 14 21 21 N 1.31620 * 120.00592 * 359.97438 * 20 18 17 22 22 Si 1.86812 * 120.00009 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46778 * 59.99889 * 22 20 18 24 24 H 1.48494 * 109.47293 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46979 * 300.00474 * 22 20 18 26 26 H 1.08997 * 109.47659 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47127 * 299.99817 * 1 2 3 28 28 H 1.09003 * 109.46998 * 59.99319 * 1 2 3 29 29 H 1.08009 * 120.00019 * 180.02562 * 2 1 3 30 30 H 1.09006 * 109.47641 * 275.24361 * 4 3 2 31 31 H 1.09004 * 109.47201 * 35.24088 * 4 3 2 32 32 H 1.09002 * 109.47688 * 155.24495 * 4 3 2 33 33 H 1.09001 * 108.93304 * 25.24357 * 8 7 5 34 34 H 1.09000 * 108.93383 * 143.82584 * 8 7 5 35 35 H 1.08996 * 108.72239 * 46.34280 * 9 8 7 36 36 H 1.08999 * 108.72241 * 164.51624 * 9 8 7 37 37 H 1.09000 * 110.45243 * 207.84067 * 12 10 9 38 38 H 1.09009 * 110.45042 * 330.26414 * 12 10 9 39 39 H 1.09006 * 110.64555 * 252.49898 * 13 12 10 40 40 H 1.09000 * 109.16367 * 130.91079 * 13 12 10 41 41 H 1.09005 * 109.54753 * 30.84715 * 16 7 5 42 42 H 1.09008 * 109.62074 * 270.61700 * 16 7 5 43 43 H 0.96996 * 120.00357 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 3.6790 1.1517 -0.0006 5 6 1.4366 2.4257 0.0006 6 8 1.2932 3.0447 1.0375 7 7 0.9215 2.9070 -1.1481 8 6 1.1707 2.2237 -2.4001 9 6 2.3451 2.8158 -3.1523 10 6 2.0278 4.1427 -3.8066 11 1 2.8562 4.4876 -4.4254 12 6 0.7486 3.9223 -4.6486 13 6 -0.3923 4.2151 -3.6776 14 6 0.2417 4.8642 -2.4722 15 1 -0.2322 5.8394 -2.3601 16 6 0.0877 4.1516 -1.1365 17 7 1.6710 5.1292 -2.7531 18 6 2.4770 6.0789 -2.1842 19 1 3.5105 6.1617 -2.4867 20 6 1.9657 6.9351 -1.2187 21 7 0.7061 6.8346 -0.8503 22 14 3.0653 8.2303 -0.4420 23 1 3.5762 9.1427 -1.4964 24 1 2.2852 9.0106 0.5518 25 1 4.2085 7.5674 0.2354 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8900 29 1 2.0470 -0.9354 -0.0004 30 1 4.0428 1.0575 1.0226 31 1 4.0421 0.3125 -0.5939 32 1 4.0422 2.0850 -0.4308 33 1 1.3756 1.1730 -2.1949 34 1 0.2798 2.2931 -3.0243 35 1 3.1712 2.9578 -2.4556 36 1 2.6565 2.1124 -3.9246 37 1 0.7252 4.6110 -5.4931 38 1 0.6955 2.8910 -4.9976 39 1 -0.8971 3.2933 -3.3885 40 1 -1.0965 4.9005 -4.1493 41 1 0.4223 4.8072 -0.3325 42 1 -0.9591 3.8895 -0.9816 43 1 0.3489 7.4326 -0.1754 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045748895.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:29 Heat of formation + Delta-G solvation = 2.669848 kcal Electronic energy + Delta-G solvation = -24083.934608 eV Core-core repulsion = 20936.839223 eV Total energy + Delta-G solvation = -3147.095385 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.58186 -39.78455 -36.44055 -35.49268 -34.81036 -33.09701 -31.30863 -31.08574 -28.84344 -27.47428 -26.10708 -25.38921 -24.10332 -22.25368 -21.03763 -20.78189 -18.83269 -18.63625 -17.45092 -16.86893 -16.67586 -16.33899 -16.06547 -15.74994 -15.04306 -14.86831 -14.61597 -14.31179 -14.07193 -13.77098 -13.58523 -13.49968 -13.43153 -13.00423 -12.97121 -12.74470 -12.65968 -12.63539 -12.47085 -12.39413 -12.33314 -12.04198 -11.60522 -11.41696 -11.27407 -10.94944 -10.73364 -10.37372 -9.81207 -9.33567 -8.79919 -7.75966 -5.12316 0.89748 1.39337 1.43167 1.47635 1.74949 2.38378 2.49364 3.35521 3.61323 3.75287 3.96081 4.01492 4.12634 4.21638 4.28908 4.37001 4.48882 4.54496 4.59618 4.67147 4.74122 4.77427 4.80486 4.83074 4.91382 4.93507 5.03337 5.09470 5.14226 5.16811 5.28950 5.34829 5.38409 5.51629 5.52767 5.62269 5.68621 5.75994 5.89096 6.01167 6.34282 6.77020 7.13878 7.38468 7.81770 8.54291 9.26638 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016662 B = 0.008260 C = 0.006855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.084225 B = 3388.979461 C = 4083.873121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.102 4.102 3 C -0.182 4.182 4 C -0.096 4.096 5 C 0.539 3.461 6 O -0.613 6.613 7 N -0.581 5.581 8 C 0.103 3.897 9 C -0.141 4.141 10 C 0.136 3.864 11 H 0.059 0.941 12 C -0.117 4.117 13 C -0.117 4.117 14 C 0.152 3.848 15 H 0.054 0.946 16 C 0.130 3.870 17 N -0.602 5.602 18 C -0.214 4.214 19 H 0.074 0.926 20 C -0.064 4.064 21 N -0.933 5.933 22 Si 0.962 3.038 23 H -0.274 1.274 24 H -0.299 1.299 25 H -0.293 1.293 26 H 0.098 0.902 27 H 0.041 0.959 28 H 0.067 0.933 29 H 0.163 0.837 30 H 0.069 0.931 31 H 0.107 0.893 32 H 0.036 0.964 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.027 0.973 36 H 0.100 0.900 37 H 0.062 0.938 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.062 0.938 41 H 0.070 0.930 42 H 0.035 0.965 43 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.182 -16.897 -7.627 18.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.120 4.120 3 C -0.184 4.184 4 C -0.153 4.153 5 C 0.328 3.672 6 O -0.496 6.496 7 N -0.310 5.310 8 C -0.019 4.019 9 C -0.181 4.181 10 C 0.030 3.970 11 H 0.077 0.923 12 C -0.155 4.155 13 C -0.155 4.155 14 C 0.045 3.955 15 H 0.072 0.928 16 C 0.007 3.993 17 N -0.325 5.325 18 C -0.344 4.344 19 H 0.092 0.908 20 C -0.257 4.257 21 N -0.583 5.583 22 Si 0.793 3.207 23 H -0.200 1.200 24 H -0.225 1.225 25 H -0.221 1.221 26 H 0.117 0.883 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.180 0.820 30 H 0.088 0.912 31 H 0.126 0.874 32 H 0.055 0.945 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.046 0.954 36 H 0.118 0.882 37 H 0.081 0.919 38 H 0.122 0.878 39 H 0.103 0.897 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.053 0.947 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.249 -16.332 -6.991 17.767 hybrid contribution 0.558 1.689 1.189 2.140 sum 0.309 -14.642 -5.801 15.753 Atomic orbital electron populations 1.21009 0.92852 1.04005 1.01364 1.23566 0.96358 0.96798 0.95326 1.21544 0.97648 0.92117 1.07139 1.20639 0.89027 1.02840 1.02790 1.19344 0.78230 0.86294 0.83317 1.90725 1.62342 1.62007 1.34551 1.48472 1.49524 1.26199 1.06853 1.21297 0.99865 0.95968 0.84806 1.21930 0.97800 0.98492 0.99862 1.21470 0.96749 0.89022 0.89798 0.92302 1.22363 0.93522 1.02687 0.96942 1.21614 0.98172 1.00540 0.95210 1.20489 0.85871 0.98131 0.90987 0.92827 1.22723 0.90819 0.84048 1.01693 1.45142 1.07536 1.36509 1.43291 1.19126 0.92644 1.07060 1.15521 0.90802 1.25329 0.97672 1.02074 1.00605 1.69943 1.13510 1.40287 1.34560 0.85379 0.77725 0.79612 0.77992 1.19951 1.22502 1.22064 0.88291 0.94057 0.91481 0.81998 0.91207 0.87404 0.94451 0.88951 0.88592 0.95449 0.88178 0.91913 0.87813 0.89719 0.91937 0.91220 0.94651 0.94978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.13 71.23 0.65 -2.39 16 2 C -0.10 -2.30 9.06 24.52 0.22 -2.08 16 3 C -0.18 -5.66 4.22 -18.71 -0.08 -5.74 16 4 C -0.10 -2.59 10.02 71.23 0.71 -1.88 16 5 C 0.54 23.38 5.90 86.57 0.51 23.89 16 6 O -0.61 -33.90 16.74 -4.08 -0.07 -33.97 16 7 N -0.58 -23.56 2.77 -826.00 -2.29 -25.85 16 8 C 0.10 3.07 4.48 86.21 0.39 3.46 16 9 C -0.14 -4.35 5.01 29.56 0.15 -4.20 16 10 C 0.14 4.92 4.08 44.61 0.18 5.11 16 11 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 12 C -0.12 -3.30 5.99 31.06 0.19 -3.11 16 13 C -0.12 -3.86 5.64 29.79 0.17 -3.69 16 14 C 0.15 6.94 1.99 43.73 0.09 7.02 16 15 H 0.05 2.95 6.09 -2.39 -0.01 2.94 16 16 C 0.13 6.26 5.73 85.46 0.49 6.75 16 17 N -0.60 -29.26 2.69 -650.47 -1.75 -31.01 16 18 C -0.21 -12.03 10.40 84.03 0.87 -11.15 16 19 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 20 C -0.06 -3.73 5.49 84.86 0.47 -3.26 16 21 N -0.93 -56.49 8.20 21.65 0.18 -56.31 16 22 Si 0.96 48.68 29.55 68.60 2.03 50.71 16 23 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 24 H -0.30 -15.37 7.11 99.48 0.71 -14.66 16 25 H -0.29 -14.96 7.11 99.48 0.71 -14.25 16 26 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.04 1.17 8.09 -2.39 -0.02 1.15 16 28 H 0.07 1.57 7.07 -2.39 -0.02 1.55 16 29 H 0.16 2.32 8.06 -2.91 -0.02 2.29 16 30 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.11 1.96 8.11 -2.38 -0.02 1.94 16 32 H 0.04 1.21 7.97 -2.39 -0.02 1.19 16 33 H 0.09 2.23 5.52 -2.39 -0.01 2.22 16 34 H 0.10 2.53 3.91 -2.39 -0.01 2.52 16 35 H 0.03 1.02 8.03 -2.39 -0.02 1.00 16 36 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.10 2.09 7.39 -2.38 -0.02 2.07 16 39 H 0.08 2.35 6.12 -2.38 -0.01 2.34 16 40 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.07 4.22 5.36 -2.38 -0.01 4.21 16 42 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 43 H 0.24 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -76.89 323.27 4.10 -72.80 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.99 Total: 14.91 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 5.01 Total: 8.73 kcal Atomic # 7 Polarization: -109.31 SS G_CDS: -3.86 Total: -113.18 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -0.07 Total: -33.97 kcal Atomic # 14 Polarization: 48.68 SS G_CDS: 2.03 Total: 50.71 kcal Total: -76.89 4.10 -72.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045748895.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.467 kcal (2) G-P(sol) polarization free energy of solvation -76.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds