Wall clock time and date at job start Tue Mar 31 2020 01:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32987 * 120.00124 * 2 1 4 4 C 1.50704 * 120.00529 * 0.02562 * 3 2 1 5 5 C 1.47101 * 119.99874 * 179.97438 * 3 2 1 6 6 O 1.21615 * 120.00147 * 257.66558 * 5 3 2 7 7 N 1.34771 * 119.99891 * 77.66182 * 5 3 2 8 8 C 1.44793 * 120.18351 * 355.02221 * 7 5 3 9 9 C 1.51513 * 112.22231 * 264.52918 * 8 7 5 10 10 C 1.51310 * 113.25130 * 285.36078 * 9 8 7 11 11 H 1.09004 * 111.31356 * 185.23680 * 10 9 8 12 12 C 1.54714 * 106.48625 * 307.66468 * 10 9 8 13 13 C 1.52667 * 104.14248 * 88.80759 * 12 10 9 14 14 C 1.50874 * 106.05722 * 12.09344 * 13 12 10 15 15 H 1.09000 * 106.51806 * 121.65049 * 14 13 12 16 16 C 1.49822 * 120.18170 * 174.99682 * 7 5 3 17 17 N 1.48062 * 109.33944 * 7.27372 * 14 13 12 18 18 C 1.36932 * 127.84278 * 154.84800 * 17 14 13 19 19 H 1.08001 * 119.99977 * 352.14075 * 18 17 14 20 20 C 1.38813 * 120.00259 * 172.14733 * 18 17 14 21 21 N 1.31623 * 119.99658 * 343.00745 * 20 18 17 22 22 Si 1.86794 * 120.00091 * 163.00912 * 20 18 17 23 23 H 1.48497 * 109.47148 * 94.99516 * 22 20 18 24 24 H 1.48503 * 109.46998 * 214.99183 * 22 20 18 25 25 H 1.48499 * 109.47524 * 334.98995 * 22 20 18 26 26 H 1.09003 * 109.47003 * 300.00328 * 1 2 3 27 27 H 1.09000 * 109.46969 * 59.99557 * 1 2 3 28 28 H 1.08994 * 109.47531 * 179.97438 * 1 2 3 29 29 H 1.08000 * 119.99638 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.46520 * 274.66440 * 4 3 2 31 31 H 1.09006 * 109.46534 * 34.65672 * 4 3 2 32 32 H 1.08993 * 109.47721 * 154.65652 * 4 3 2 33 33 H 1.09003 * 108.92935 * 25.23270 * 8 7 5 34 34 H 1.09000 * 108.93412 * 143.81901 * 8 7 5 35 35 H 1.08998 * 108.72924 * 46.33492 * 9 8 7 36 36 H 1.09004 * 108.72626 * 164.51331 * 9 8 7 37 37 H 1.08996 * 110.45558 * 207.83393 * 12 10 9 38 38 H 1.08993 * 110.45333 * 330.26967 * 12 10 9 39 39 H 1.09002 * 110.63932 * 252.49807 * 13 12 10 40 40 H 1.08999 * 109.16054 * 130.91011 * 13 12 10 41 41 H 1.08999 * 109.54737 * 30.85272 * 16 7 5 42 42 H 1.09000 * 109.54854 * 270.58013 * 16 7 5 43 43 H 0.97003 * 119.99831 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4186 2.4569 0.0006 5 6 3.6430 1.1516 0.0006 6 8 4.2507 1.3768 1.0296 7 7 4.3173 0.9019 -1.1393 8 6 3.6018 0.5277 -2.3412 9 6 3.5392 -0.9748 -2.5264 10 6 4.8512 -1.5757 -2.9817 11 1 4.7473 -2.6400 -3.1931 12 6 5.2910 -0.7750 -4.2303 13 6 6.1068 0.3836 -3.6622 14 6 6.3573 0.0465 -2.2131 15 1 7.4392 0.0277 -2.0818 16 6 5.8112 1.0107 -1.1700 17 7 5.8838 -1.3297 -1.9408 18 6 6.3120 -2.1874 -0.9632 19 1 7.1700 -1.9324 -0.3589 20 6 5.6434 -3.3849 -0.7487 21 7 4.4298 -3.5561 -1.2288 22 14 6.4658 -4.7532 0.2211 23 1 6.0459 -4.6733 1.6432 24 1 6.0645 -6.0681 -0.3404 25 1 7.9408 -4.6060 0.1314 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 2.0470 -0.9353 -0.0004 30 1 1.1643 2.7300 -1.0236 31 1 0.5051 2.3488 0.5854 32 1 2.0414 3.2358 0.4404 33 1 2.5863 0.9196 -2.2848 34 1 4.1022 0.9697 -3.2028 35 1 3.2547 -1.4327 -1.5791 36 1 2.7749 -1.2043 -3.2689 37 1 5.9031 -1.3956 -4.8847 38 1 4.4205 -0.3992 -4.7679 39 1 5.5531 1.3191 -3.7423 40 1 7.0509 0.4551 -4.2023 41 1 6.2156 0.7556 -0.1904 42 1 6.0975 2.0297 -1.4300 43 1 3.9627 -4.3930 -1.0793 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045748896.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:32 Heat of formation + Delta-G solvation = 17.375901 kcal Electronic energy + Delta-G solvation = -23878.729473 eV Core-core repulsion = 20732.271791 eV Total energy + Delta-G solvation = -3146.457682 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.04128 -38.18419 -35.28971 -34.11680 -32.59005 -32.02808 -29.40511 -29.19730 -27.30926 -26.08370 -25.55525 -23.91536 -22.16124 -20.54231 -19.43639 -19.01996 -17.22356 -16.91402 -16.30393 -15.86159 -14.83668 -14.71111 -14.51553 -13.96949 -13.61576 -13.51541 -13.37884 -12.76713 -12.53148 -12.41516 -12.20583 -12.03578 -11.88985 -11.76607 -11.47118 -11.38581 -11.15613 -11.05254 -10.86575 -10.72609 -10.61967 -10.26627 -10.00632 -9.76050 -9.49625 -9.31989 -9.01435 -8.61188 -8.54549 -7.87645 -6.84813 -5.78495 -3.05061 2.16757 3.29516 3.40602 3.47457 3.48713 3.71987 4.48451 4.99550 5.23029 5.30683 5.34919 5.46405 5.48358 5.51881 5.52360 5.61757 5.66123 5.71613 5.80711 5.87110 5.94577 6.04595 6.07996 6.13753 6.19876 6.24961 6.30802 6.34946 6.49432 6.58636 6.69567 6.78739 6.83879 6.90960 6.96060 7.02897 7.27139 7.53895 7.66098 7.82871 8.15605 8.20267 8.83544 9.14589 9.77113 10.52006 11.35475 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015210 B = 0.008078 C = 0.006787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.433442 B = 3465.481703 C = 4124.508857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.115 4.115 3 C -0.170 4.170 4 C -0.100 4.100 5 C 0.557 3.443 6 O -0.556 6.556 7 N -0.579 5.579 8 C 0.107 3.893 9 C -0.142 4.142 10 C 0.185 3.815 11 H 0.097 0.903 12 C -0.143 4.143 13 C -0.115 4.115 14 C 0.132 3.868 15 H 0.040 0.960 16 C 0.115 3.885 17 N -0.577 5.577 18 C -0.216 4.216 19 H 0.075 0.925 20 C -0.004 4.004 21 N -0.909 5.909 22 Si 0.904 3.096 23 H -0.291 1.291 24 H -0.291 1.291 25 H -0.281 1.281 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.124 0.876 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.042 0.958 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.049 0.951 43 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.116 9.147 -5.510 12.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.134 4.134 3 C -0.173 4.173 4 C -0.157 4.157 5 C 0.345 3.655 6 O -0.435 6.435 7 N -0.310 5.310 8 C -0.016 4.016 9 C -0.182 4.182 10 C 0.079 3.921 11 H 0.115 0.885 12 C -0.182 4.182 13 C -0.153 4.153 14 C 0.024 3.976 15 H 0.058 0.942 16 C -0.009 4.009 17 N -0.300 5.300 18 C -0.344 4.344 19 H 0.093 0.907 20 C -0.200 4.200 21 N -0.555 5.555 22 Si 0.735 3.265 23 H -0.218 1.218 24 H -0.217 1.217 25 H -0.207 1.207 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.142 0.858 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.067 0.933 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.800 9.017 -4.864 11.773 hybrid contribution 0.346 -0.858 0.586 1.096 sum -5.454 8.158 -4.278 10.706 Atomic orbital electron populations 1.20849 0.92687 1.02511 1.01652 1.23424 0.96073 0.97743 0.96172 1.21324 0.93206 0.96557 1.06201 1.20625 0.99357 0.93956 1.01741 1.18450 0.87430 0.76393 0.83219 1.90731 1.70054 1.50961 1.31776 1.48089 1.07032 1.65944 1.09926 1.21175 0.95543 0.97597 0.87335 1.21981 0.99530 0.93326 1.03403 1.20997 0.87306 0.98613 0.85227 0.88516 1.22561 0.98852 0.97343 0.99474 1.21494 0.99850 0.98421 0.95501 1.20580 0.97654 0.87352 0.92046 0.94171 1.22536 0.78747 0.97650 1.01959 1.45078 1.43747 1.08194 1.32935 1.18892 1.08387 0.96739 1.10346 0.90676 1.24659 0.95838 0.99030 1.00498 1.69944 1.10239 1.25009 1.50354 0.86220 0.78964 0.82050 0.79309 1.21813 1.21685 1.20709 0.91536 0.91454 0.91764 0.85818 0.91442 0.91329 0.91968 0.92274 0.90921 0.89231 0.93908 0.92593 0.92211 0.91790 0.92260 0.90148 0.93301 0.93915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.45 8.97 36.01 0.32 -1.13 16 2 C -0.12 -1.89 9.14 -36.13 -0.33 -2.22 16 3 C -0.17 -2.89 3.99 -102.85 -0.41 -3.30 16 4 C -0.10 -1.29 9.47 36.01 0.34 -0.95 16 5 C 0.56 11.71 7.04 -12.67 -0.09 11.62 16 6 O -0.56 -13.75 16.74 5.26 0.09 -13.66 16 7 N -0.58 -11.45 2.87 -175.05 -0.50 -11.95 16 8 C 0.11 1.86 4.78 -5.71 -0.03 1.83 16 9 C -0.14 -2.84 4.78 -28.34 -0.14 -2.97 16 10 C 0.19 4.01 2.90 -66.68 -0.19 3.82 16 11 H 0.10 2.43 6.61 -51.93 -0.34 2.09 16 12 C -0.14 -2.46 6.00 -26.00 -0.16 -2.61 16 13 C -0.11 -1.85 5.64 -27.97 -0.16 -2.01 16 14 C 0.13 2.61 2.67 -68.56 -0.18 2.43 16 15 H 0.04 0.81 8.11 -51.93 -0.42 0.39 16 16 C 0.11 2.28 6.08 -2.61 -0.02 2.26 16 17 N -0.58 -13.80 2.68 -156.95 -0.42 -14.22 16 18 C -0.22 -5.87 10.32 -15.06 -0.16 -6.02 16 19 H 0.08 2.06 7.89 -52.49 -0.41 1.64 16 20 C 0.00 -0.10 5.35 -17.43 -0.09 -0.19 16 21 N -0.91 -25.09 9.86 55.49 0.55 -24.54 16 22 Si 0.90 22.10 29.59 -169.99 -5.03 17.07 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H 0.07 0.72 7.41 -51.93 -0.38 0.34 16 27 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.12 2.46 6.82 -52.49 -0.36 2.10 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.76 6.68 -51.93 -0.35 0.41 16 32 H 0.06 0.84 8.08 -51.93 -0.42 0.42 16 33 H 0.06 0.93 6.41 -51.93 -0.33 0.59 16 34 H 0.07 1.15 3.91 -51.93 -0.20 0.94 16 35 H 0.09 2.14 5.65 -51.93 -0.29 1.85 16 36 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.06 0.89 7.39 -51.93 -0.38 0.50 16 39 H 0.06 0.92 6.12 -51.93 -0.32 0.60 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.08 1.84 7.47 -51.93 -0.39 1.45 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 323.98 15.07 4.88 4.88 Total: -1.00 -30.95 323.98 -8.42 -39.37 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.70 Total: 2.51 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -1.28 Total: 0.56 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: -0.38 Total: -50.71 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: 0.09 Total: -13.66 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.95 -8.42 -39.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045748896.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.742 kcal (2) G-P(sol) polarization free energy of solvation -30.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds