Wall clock time and date at job start Tue Mar 31 2020 01:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32987 * 120.00124 * 2 1 4 4 C 1.50704 * 120.00529 * 0.02562 * 3 2 1 5 5 C 1.47101 * 119.99874 * 179.97438 * 3 2 1 6 6 O 1.21615 * 120.00147 * 257.66558 * 5 3 2 7 7 N 1.34771 * 119.99891 * 77.66182 * 5 3 2 8 8 C 1.44793 * 120.18351 * 355.02221 * 7 5 3 9 9 C 1.51513 * 112.22231 * 264.52918 * 8 7 5 10 10 C 1.51310 * 113.25130 * 285.36078 * 9 8 7 11 11 H 1.09004 * 111.31356 * 185.23680 * 10 9 8 12 12 C 1.54714 * 106.48625 * 307.66468 * 10 9 8 13 13 C 1.52667 * 104.14248 * 88.80759 * 12 10 9 14 14 C 1.50874 * 106.05722 * 12.09344 * 13 12 10 15 15 H 1.09000 * 106.51806 * 121.65049 * 14 13 12 16 16 C 1.49822 * 120.18170 * 174.99682 * 7 5 3 17 17 N 1.48062 * 109.33944 * 7.27372 * 14 13 12 18 18 C 1.36932 * 127.84278 * 154.84800 * 17 14 13 19 19 H 1.08001 * 119.99977 * 352.14075 * 18 17 14 20 20 C 1.38813 * 120.00259 * 172.14733 * 18 17 14 21 21 N 1.31623 * 119.99658 * 343.00745 * 20 18 17 22 22 Si 1.86794 * 120.00091 * 163.00912 * 20 18 17 23 23 H 1.48497 * 109.47148 * 94.99516 * 22 20 18 24 24 H 1.48503 * 109.46998 * 214.99183 * 22 20 18 25 25 H 1.48499 * 109.47524 * 334.98995 * 22 20 18 26 26 H 1.09003 * 109.47003 * 300.00328 * 1 2 3 27 27 H 1.09000 * 109.46969 * 59.99557 * 1 2 3 28 28 H 1.08994 * 109.47531 * 179.97438 * 1 2 3 29 29 H 1.08000 * 119.99638 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.46520 * 274.66440 * 4 3 2 31 31 H 1.09006 * 109.46534 * 34.65672 * 4 3 2 32 32 H 1.08993 * 109.47721 * 154.65652 * 4 3 2 33 33 H 1.09003 * 108.92935 * 25.23270 * 8 7 5 34 34 H 1.09000 * 108.93412 * 143.81901 * 8 7 5 35 35 H 1.08998 * 108.72924 * 46.33492 * 9 8 7 36 36 H 1.09004 * 108.72626 * 164.51331 * 9 8 7 37 37 H 1.08996 * 110.45558 * 207.83393 * 12 10 9 38 38 H 1.08993 * 110.45333 * 330.26967 * 12 10 9 39 39 H 1.09002 * 110.63932 * 252.49807 * 13 12 10 40 40 H 1.08999 * 109.16054 * 130.91011 * 13 12 10 41 41 H 1.08999 * 109.54737 * 30.85272 * 16 7 5 42 42 H 1.09000 * 109.54854 * 270.58013 * 16 7 5 43 43 H 0.97003 * 119.99831 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1517 0.0000 4 6 1.4186 2.4569 0.0006 5 6 3.6430 1.1516 0.0006 6 8 4.2507 1.3768 1.0296 7 7 4.3173 0.9019 -1.1393 8 6 3.6018 0.5277 -2.3412 9 6 3.5392 -0.9748 -2.5264 10 6 4.8512 -1.5757 -2.9817 11 1 4.7473 -2.6400 -3.1931 12 6 5.2910 -0.7750 -4.2303 13 6 6.1068 0.3836 -3.6622 14 6 6.3573 0.0465 -2.2131 15 1 7.4392 0.0277 -2.0818 16 6 5.8112 1.0107 -1.1700 17 7 5.8838 -1.3297 -1.9408 18 6 6.3120 -2.1874 -0.9632 19 1 7.1700 -1.9324 -0.3589 20 6 5.6434 -3.3849 -0.7487 21 7 4.4298 -3.5561 -1.2288 22 14 6.4658 -4.7532 0.2211 23 1 6.0459 -4.6733 1.6432 24 1 6.0645 -6.0681 -0.3404 25 1 7.9408 -4.6060 0.1314 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 2.0470 -0.9353 -0.0004 30 1 1.1643 2.7300 -1.0236 31 1 0.5051 2.3488 0.5854 32 1 2.0414 3.2358 0.4404 33 1 2.5863 0.9196 -2.2848 34 1 4.1022 0.9697 -3.2028 35 1 3.2547 -1.4327 -1.5791 36 1 2.7749 -1.2043 -3.2689 37 1 5.9031 -1.3956 -4.8847 38 1 4.4205 -0.3992 -4.7679 39 1 5.5531 1.3191 -3.7423 40 1 7.0509 0.4551 -4.2023 41 1 6.2156 0.7556 -0.1904 42 1 6.0975 2.0297 -1.4300 43 1 3.9627 -4.3930 -1.0793 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045748896.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:31 Heat of formation + Delta-G solvation = -1.504141 kcal Electronic energy + Delta-G solvation = -23879.548173 eV Core-core repulsion = 20732.271791 eV Total energy + Delta-G solvation = -3147.276383 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.61027 -39.78732 -36.65051 -35.75629 -34.47691 -33.62317 -31.20127 -30.30911 -28.80008 -27.54608 -26.96721 -25.73528 -23.67712 -21.95916 -21.15677 -20.56562 -18.78513 -18.62925 -17.80094 -17.47854 -16.53655 -16.29240 -16.20015 -15.77872 -15.05918 -14.77434 -14.68210 -14.26693 -14.05748 -13.70632 -13.59618 -13.42893 -13.31204 -13.17300 -13.08401 -12.85978 -12.72052 -12.64155 -12.50240 -12.41789 -12.15649 -11.94677 -11.73647 -11.40400 -11.33131 -10.88622 -10.61679 -10.51249 -9.82170 -9.50068 -8.77138 -7.87905 -5.12708 0.86345 1.39165 1.41257 1.49195 1.70096 2.21220 2.47860 3.28385 3.58495 3.69405 3.93266 4.05455 4.09492 4.21461 4.24110 4.37055 4.45114 4.50930 4.52685 4.70952 4.72655 4.74107 4.77246 4.88328 4.90910 4.93314 5.04197 5.09283 5.13233 5.15746 5.22508 5.31275 5.41002 5.49005 5.52422 5.53102 5.72902 5.78052 5.83474 6.13167 6.24334 6.60436 7.11898 7.23166 7.77299 8.53634 9.23450 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015210 B = 0.008078 C = 0.006787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.433442 B = 3465.481703 C = 4124.508857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.114 4.114 3 C -0.178 4.178 4 C -0.092 4.092 5 C 0.542 3.458 6 O -0.608 6.608 7 N -0.579 5.579 8 C 0.110 3.890 9 C -0.133 4.133 10 C 0.175 3.825 11 H 0.053 0.947 12 C -0.131 4.131 13 C -0.104 4.104 14 C 0.131 3.869 15 H 0.031 0.969 16 C 0.115 3.885 17 N -0.599 5.599 18 C -0.227 4.227 19 H 0.060 0.940 20 C -0.051 4.051 21 N -0.920 5.920 22 Si 0.956 3.044 23 H -0.300 1.300 24 H -0.288 1.288 25 H -0.276 1.276 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.052 0.948 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.043 0.957 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.035 0.965 42 H 0.084 0.916 43 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.698 11.330 -7.778 15.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.133 4.133 3 C -0.181 4.181 4 C -0.149 4.149 5 C 0.331 3.669 6 O -0.492 6.492 7 N -0.309 5.309 8 C -0.013 4.013 9 C -0.173 4.173 10 C 0.069 3.931 11 H 0.071 0.929 12 C -0.169 4.169 13 C -0.142 4.142 14 C 0.023 3.977 15 H 0.049 0.951 16 C -0.009 4.009 17 N -0.322 5.322 18 C -0.356 4.356 19 H 0.078 0.922 20 C -0.246 4.246 21 N -0.568 5.568 22 Si 0.786 3.214 23 H -0.228 1.228 24 H -0.214 1.214 25 H -0.201 1.201 26 H 0.103 0.897 27 H 0.113 0.887 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.120 0.880 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.100 0.900 41 H 0.054 0.946 42 H 0.102 0.898 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.381 11.210 -7.184 15.223 hybrid contribution 0.905 -1.587 1.323 2.256 sum -6.476 9.622 -5.862 12.996 Atomic orbital electron populations 1.20883 0.88843 1.03361 1.03734 1.23405 0.98536 0.95484 0.95870 1.21439 0.90827 0.98763 1.07025 1.20695 0.99329 0.90941 1.03904 1.19324 0.89420 0.75392 0.82725 1.90691 1.71504 1.53448 1.33537 1.48267 1.07018 1.64993 1.10595 1.21296 0.97150 0.95692 0.87131 1.21806 0.99031 0.94922 1.01523 1.21020 0.87931 0.97273 0.86910 0.92897 1.22462 1.00333 0.96944 0.97210 1.21480 1.01440 0.99088 0.92154 1.20838 0.96929 0.85362 0.94556 0.95084 1.22463 0.79204 0.99476 0.99733 1.45238 1.44476 1.09839 1.32668 1.18996 1.07940 0.97809 1.10871 0.92200 1.25255 0.96548 1.00687 1.02130 1.70103 1.10730 1.24683 1.51286 0.85417 0.78426 0.80028 0.77564 1.22830 1.21405 1.20095 0.89668 0.88662 0.91725 0.90639 0.88559 0.88985 0.92865 0.89756 0.87989 0.93826 0.91882 0.92439 0.88775 0.88658 0.89992 0.94643 0.89754 0.94667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.39 8.97 71.24 0.64 -1.75 16 2 C -0.11 -3.68 9.14 24.52 0.22 -3.45 16 3 C -0.18 -5.84 3.99 -18.70 -0.07 -5.91 16 4 C -0.09 -2.08 9.47 71.24 0.67 -1.40 16 5 C 0.54 23.08 7.04 86.57 0.61 23.69 16 6 O -0.61 -31.44 16.74 -4.08 -0.07 -31.50 16 7 N -0.58 -22.59 2.87 -825.99 -2.37 -24.96 16 8 C 0.11 3.52 4.78 86.21 0.41 3.93 16 9 C -0.13 -5.21 4.78 29.55 0.14 -5.06 16 10 C 0.17 7.54 2.90 44.61 0.13 7.67 16 11 H 0.05 2.74 6.61 -2.39 -0.02 2.72 16 12 C -0.13 -4.06 6.00 31.07 0.19 -3.87 16 13 C -0.10 -2.95 5.64 29.79 0.17 -2.78 16 14 C 0.13 5.07 2.67 43.73 0.12 5.19 16 15 H 0.03 1.25 8.11 -2.39 -0.02 1.23 16 16 C 0.12 4.55 6.08 85.46 0.52 5.07 16 17 N -0.60 -29.32 2.68 -650.46 -1.75 -31.06 16 18 C -0.23 -12.92 10.32 84.03 0.87 -12.05 16 19 H 0.06 3.48 7.89 -2.91 -0.02 3.46 16 20 C -0.05 -2.94 5.35 84.86 0.45 -2.48 16 21 N -0.92 -53.25 9.86 21.65 0.21 -53.04 16 22 Si 0.96 47.36 29.59 68.60 2.03 49.39 16 23 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 24 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 25 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 26 H 0.08 1.55 7.41 -2.39 -0.02 1.53 16 27 H 0.09 1.55 8.10 -2.39 -0.02 1.53 16 28 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.08 3.19 6.82 -2.91 -0.02 3.17 16 30 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.09 1.65 6.68 -2.38 -0.02 1.64 16 32 H 0.05 1.31 8.08 -2.39 -0.02 1.29 16 33 H 0.08 2.33 6.41 -2.39 -0.02 2.31 16 34 H 0.10 2.71 3.91 -2.39 -0.01 2.70 16 35 H 0.04 2.14 5.65 -2.39 -0.01 2.13 16 36 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 37 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.09 2.31 7.39 -2.39 -0.02 2.29 16 39 H 0.10 2.16 6.12 -2.39 -0.01 2.15 16 40 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.03 1.70 7.47 -2.39 -0.02 1.68 16 42 H 0.08 2.72 8.14 -2.39 -0.02 2.71 16 43 H 0.24 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -74.31 323.98 4.12 -70.19 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 1.00 Total: 14.21 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 5.07 Total: 6.78 kcal Atomic # 7 Polarization: -105.16 SS G_CDS: -3.90 Total: -109.06 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -0.07 Total: -31.50 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Total: -74.31 4.12 -70.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045748896.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.683 kcal (2) G-P(sol) polarization free energy of solvation -74.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds