Wall clock time and date at job start Tue Mar 31 2020 00:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46667 * 2 1 4 4 C 1.50690 * 115.55326 * 294.52553 * 3 2 1 5 5 O 1.21282 * 120.00188 * 100.61811 * 4 3 2 6 6 N 1.34783 * 120.00185 * 280.62179 * 4 3 2 7 7 C 1.46654 * 125.33512 * 174.22014 * 6 4 3 8 8 C 1.53675 * 107.98427 * 179.30043 * 7 6 4 9 9 H 1.09006 * 112.77694 * 106.02676 * 8 7 6 10 10 C 1.53947 * 109.31366 * 233.07833 * 8 7 6 11 11 N 1.46754 * 106.68207 * 82.33374 * 10 8 7 12 12 C 1.36933 * 125.33314 * 198.43317 * 11 10 8 13 13 H 1.07997 * 120.00133 * 168.85976 * 12 11 10 14 14 C 1.38814 * 120.00299 * 348.86748 * 12 11 10 15 15 N 1.31623 * 119.99622 * 0.50519 * 14 12 11 16 16 Si 1.86802 * 120.00277 * 180.51075 * 14 12 11 17 17 H 1.48498 * 109.46873 * 94.97175 * 16 14 12 18 18 H 1.48490 * 109.46925 * 214.97440 * 16 14 12 19 19 H 1.48506 * 109.46797 * 334.97358 * 16 14 12 20 20 C 1.46659 * 109.33058 * 18.45792 * 11 10 8 21 21 C 1.53671 * 107.97311 * 359.28699 * 20 11 10 22 22 H 1.08999 * 112.77825 * 106.74499 * 21 20 11 23 23 C 1.46757 * 125.33431 * 354.25034 * 6 4 3 24 24 C 1.52996 * 117.51506 * 80.23113 * 3 2 1 25 25 C 1.52996 * 60.00275 * 107.47888 * 24 3 2 26 26 H 1.08995 * 109.46853 * 56.55752 * 1 2 3 27 27 H 1.08999 * 109.46853 * 176.55472 * 1 2 3 28 28 H 1.08997 * 109.47201 * 296.55551 * 1 2 3 29 29 H 1.09003 * 109.47141 * 240.00559 * 2 1 3 30 30 H 1.08999 * 109.47102 * 119.99938 * 2 1 3 31 31 H 1.09000 * 109.76753 * 298.93950 * 7 6 4 32 32 H 1.09002 * 109.77108 * 59.66544 * 7 6 4 33 33 H 1.08999 * 110.00825 * 323.02302 * 10 8 7 34 34 H 1.09001 * 110.01561 * 201.63973 * 10 8 7 35 35 H 0.96996 * 119.99420 * 180.02562 * 15 14 12 36 36 H 1.09004 * 109.76477 * 239.66047 * 20 11 10 37 37 H 1.09002 * 109.76972 * 118.92259 * 20 11 10 38 38 H 1.09006 * 110.01298 * 317.72994 * 23 6 4 39 39 H 1.08996 * 110.01954 * 79.07411 * 23 6 4 40 40 H 1.09005 * 117.49779 * 214.96910 * 24 3 2 41 41 H 1.09005 * 117.50266 * 359.97438 * 24 3 2 42 42 H 1.09007 * 117.49667 * 252.51390 * 25 24 3 43 43 H 1.09001 * 117.50333 * 107.48751 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.7245 2.2435 -1.2368 5 8 0.8029 3.0319 -1.2301 6 7 2.4665 2.0837 -2.3507 7 6 2.1927 2.7082 -3.6490 8 6 3.2938 2.2706 -4.6276 9 1 2.9458 1.5353 -5.3532 10 6 3.9233 3.5169 -5.2761 11 7 4.9182 4.0289 -4.3265 12 6 5.4448 5.2929 -4.3359 13 1 6.0320 5.6394 -3.4984 14 6 5.2238 6.1289 -5.4218 15 7 4.4997 5.7101 -6.4380 16 14 5.9541 7.8481 -5.4408 17 1 7.2475 7.8284 -6.1700 18 1 5.0163 8.7767 -6.1214 19 1 6.1790 8.3058 -4.0461 20 6 5.2604 2.9745 -3.3663 21 6 4.4273 1.7302 -3.7115 22 1 5.0202 0.9396 -4.1714 23 6 3.6746 1.2570 -2.4544 24 6 2.0584 2.1857 1.3372 25 6 3.3706 1.7215 0.7019 26 1 -0.3633 0.5663 -0.8575 27 1 -0.3633 -1.0258 -0.0618 28 1 -0.3633 0.4594 0.9192 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8900 31 1 1.2205 2.3811 -4.0177 32 1 2.2015 3.7933 -3.5455 33 1 3.1570 4.2708 -5.4566 34 1 4.4079 3.2450 -6.2139 35 1 4.3456 6.2942 -7.1969 36 1 5.0255 3.3065 -2.3550 37 1 6.3222 2.7393 -3.4399 38 1 4.2986 1.3959 -1.5715 39 1 3.4006 0.2069 -2.5557 40 1 1.8424 3.2540 1.3224 41 1 1.7069 1.6471 2.2173 42 1 3.8824 0.8773 1.1640 43 1 4.0178 2.4843 0.2690 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049035263.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:29 Heat of formation + Delta-G solvation = 13.749113 kcal Electronic energy + Delta-G solvation = -22927.576182 eV Core-core repulsion = 19780.961231 eV Total energy + Delta-G solvation = -3146.614952 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.47126 -38.71483 -36.68250 -34.88807 -32.18992 -32.02789 -30.20380 -29.64259 -26.09801 -25.47080 -24.38361 -23.32604 -22.46349 -21.45495 -20.03228 -19.36942 -18.53938 -16.94735 -16.43021 -15.90316 -15.68867 -15.16491 -14.72565 -14.17094 -13.84980 -13.68917 -13.65634 -13.01177 -12.91466 -12.53912 -12.46543 -12.10281 -11.93034 -11.67694 -11.63357 -11.60955 -11.34097 -11.27238 -10.90881 -10.82420 -10.52213 -10.33992 -10.10456 -10.06698 -9.97513 -9.87580 -9.70089 -9.44883 -8.60256 -8.27256 -6.79367 -5.75032 -3.09432 2.82131 3.17315 3.39795 3.45342 3.47293 3.63528 4.44342 4.48432 4.59875 4.72756 4.80345 4.83952 5.09227 5.23425 5.25432 5.33162 5.45059 5.49919 5.50683 5.52787 5.65665 5.75320 5.76401 5.78243 5.81481 5.90806 5.94784 5.96819 6.04313 6.15984 6.19280 6.32450 6.39882 6.61975 6.67350 6.74495 6.82820 7.47526 7.57764 7.78440 7.82704 8.27482 8.43089 9.20850 9.81301 10.46650 11.37118 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026317 B = 0.004777 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.686982 B = 5859.897093 C = 6083.835255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.075 4.075 3 C -0.150 4.150 4 C 0.563 3.437 5 O -0.540 6.540 6 N -0.602 5.602 7 C 0.120 3.880 8 C -0.124 4.124 9 H 0.088 0.912 10 C 0.184 3.816 11 N -0.599 5.599 12 C -0.229 4.229 13 H 0.075 0.925 14 C -0.005 4.005 15 N -0.920 5.920 16 Si 0.912 3.088 17 H -0.288 1.288 18 H -0.290 1.290 19 H -0.281 1.281 20 C 0.145 3.855 21 C -0.109 4.109 22 H 0.097 0.903 23 C 0.112 3.888 24 C -0.146 4.146 25 C -0.165 4.165 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.031 0.969 35 H 0.253 0.747 36 H 0.021 0.979 37 H 0.022 0.978 38 H 0.074 0.926 39 H 0.060 0.940 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.335 -14.082 11.182 18.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.113 4.113 3 C -0.153 4.153 4 C 0.350 3.650 5 O -0.417 6.417 6 N -0.334 5.334 7 C -0.002 4.002 8 C -0.144 4.144 9 H 0.106 0.894 10 C 0.059 3.941 11 N -0.325 5.325 12 C -0.358 4.358 13 H 0.093 0.907 14 C -0.201 4.201 15 N -0.567 5.567 16 Si 0.742 3.258 17 H -0.216 1.216 18 H -0.216 1.216 19 H -0.206 1.206 20 C 0.019 3.981 21 C -0.129 4.129 22 H 0.115 0.885 23 C -0.012 4.012 24 C -0.183 4.183 25 C -0.202 4.202 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.038 0.962 37 H 0.040 0.960 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.884 -13.445 11.108 17.867 hybrid contribution 0.484 0.884 -0.158 1.020 sum -3.400 -12.562 10.950 17.007 Atomic orbital electron populations 1.21721 0.95053 1.01292 1.02676 1.20965 0.96398 0.91469 1.02467 1.21420 1.03669 0.97369 0.92853 1.19075 0.81585 0.81959 0.82359 1.90689 1.31029 1.36711 1.83312 1.48176 1.27030 1.47811 1.10422 1.21887 0.97635 0.99181 0.81464 1.23209 0.93994 1.00460 0.96714 0.89359 1.21123 0.91906 0.90157 0.90913 1.44158 1.46823 1.08988 1.32561 1.19006 1.27378 0.87946 1.01445 0.90692 1.24846 1.00346 0.98941 0.95979 1.69931 1.42564 1.35881 1.08319 0.86104 0.78406 0.83836 0.77463 1.21562 1.21650 1.20622 1.21132 0.95763 0.87583 0.93637 1.22854 0.96829 0.98547 0.94657 0.88483 1.22033 0.86134 0.93932 0.99078 1.22974 1.00012 1.01161 0.94152 1.23156 0.90336 1.03803 1.02880 0.92407 0.92662 0.92449 0.91268 0.91030 0.92532 0.90393 0.91107 0.95080 0.93658 0.96161 0.95963 0.90730 0.92177 0.88169 0.88077 0.87904 0.88138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.83 37.16 0.37 -1.20 16 2 C -0.08 -0.75 5.81 -26.73 -0.16 -0.91 16 3 C -0.15 -1.87 1.22 -155.66 -0.19 -2.06 16 4 C 0.56 9.54 6.33 -10.99 -0.07 9.47 16 5 O -0.54 -11.29 17.31 5.56 0.10 -11.20 16 6 N -0.60 -9.97 3.31 -172.34 -0.57 -10.54 16 7 C 0.12 2.23 6.24 -3.61 -0.02 2.21 16 8 C -0.12 -2.21 4.09 -88.48 -0.36 -2.57 16 9 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 10 C 0.18 4.33 4.58 -3.41 -0.02 4.32 16 11 N -0.60 -15.07 3.37 -171.91 -0.58 -15.65 16 12 C -0.23 -6.40 10.23 -15.06 -0.15 -6.55 16 13 H 0.08 2.05 7.83 -52.49 -0.41 1.63 16 14 C 0.00 -0.13 5.48 -17.43 -0.10 -0.22 16 15 N -0.92 -26.79 10.40 55.49 0.58 -26.21 16 16 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 C 0.14 2.92 6.62 -3.61 -0.02 2.90 16 21 C -0.11 -1.75 4.09 -88.46 -0.36 -2.11 16 22 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 23 C 0.11 1.53 5.72 -3.39 -0.02 1.51 16 24 C -0.15 -1.66 9.87 -26.74 -0.26 -1.92 16 25 C -0.16 -1.76 8.43 -26.73 -0.23 -1.99 16 26 H 0.06 0.74 7.62 -51.93 -0.40 0.35 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.67 7.99 -51.93 -0.41 0.26 16 30 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.08 1.75 7.47 -51.93 -0.39 1.36 16 33 H 0.07 1.88 6.60 -51.93 -0.34 1.54 16 34 H 0.03 0.80 7.91 -51.93 -0.41 0.38 16 35 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.02 0.42 7.47 -51.93 -0.39 0.03 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.94 5.79 -51.93 -0.30 0.64 16 39 H 0.06 0.68 7.99 -51.93 -0.41 0.27 16 40 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.10 1.23 7.73 -51.93 -0.40 0.82 16 LS Contribution 337.86 15.07 5.09 5.09 Total: -1.00 -32.10 337.86 -9.23 -41.33 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -7.23 Total: -0.88 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -1.59 Total: 0.85 kcal Atomic # 7 Polarization: -51.82 SS G_CDS: -0.57 Total: -52.39 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.10 Total: -11.20 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.10 -9.23 -41.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049035263.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.075 kcal (2) G-P(sol) polarization free energy of solvation -32.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds