Wall clock time and date at job start Tue Mar 31 2020 00:06:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46667 * 2 1 4 4 C 1.50690 * 115.55326 * 294.52553 * 3 2 1 5 5 O 1.21282 * 120.00188 * 100.61811 * 4 3 2 6 6 N 1.34783 * 120.00185 * 280.62179 * 4 3 2 7 7 C 1.46654 * 125.33512 * 174.22014 * 6 4 3 8 8 C 1.53675 * 107.98427 * 179.30043 * 7 6 4 9 9 H 1.09006 * 112.77694 * 106.02676 * 8 7 6 10 10 C 1.53947 * 109.31366 * 233.07833 * 8 7 6 11 11 N 1.46754 * 106.68207 * 82.33374 * 10 8 7 12 12 C 1.36933 * 125.33314 * 198.43317 * 11 10 8 13 13 H 1.07997 * 120.00133 * 168.85976 * 12 11 10 14 14 C 1.38814 * 120.00299 * 348.86748 * 12 11 10 15 15 N 1.31623 * 119.99622 * 0.50519 * 14 12 11 16 16 Si 1.86802 * 120.00277 * 180.51075 * 14 12 11 17 17 H 1.48498 * 109.46873 * 94.97175 * 16 14 12 18 18 H 1.48490 * 109.46925 * 214.97440 * 16 14 12 19 19 H 1.48506 * 109.46797 * 334.97358 * 16 14 12 20 20 C 1.46659 * 109.33058 * 18.45792 * 11 10 8 21 21 C 1.53671 * 107.97311 * 359.28699 * 20 11 10 22 22 H 1.08999 * 112.77825 * 106.74499 * 21 20 11 23 23 C 1.46757 * 125.33431 * 354.25034 * 6 4 3 24 24 C 1.52996 * 117.51506 * 80.23113 * 3 2 1 25 25 C 1.52996 * 60.00275 * 107.47888 * 24 3 2 26 26 H 1.08995 * 109.46853 * 56.55752 * 1 2 3 27 27 H 1.08999 * 109.46853 * 176.55472 * 1 2 3 28 28 H 1.08997 * 109.47201 * 296.55551 * 1 2 3 29 29 H 1.09003 * 109.47141 * 240.00559 * 2 1 3 30 30 H 1.08999 * 109.47102 * 119.99938 * 2 1 3 31 31 H 1.09000 * 109.76753 * 298.93950 * 7 6 4 32 32 H 1.09002 * 109.77108 * 59.66544 * 7 6 4 33 33 H 1.08999 * 110.00825 * 323.02302 * 10 8 7 34 34 H 1.09001 * 110.01561 * 201.63973 * 10 8 7 35 35 H 0.96996 * 119.99420 * 180.02562 * 15 14 12 36 36 H 1.09004 * 109.76477 * 239.66047 * 20 11 10 37 37 H 1.09002 * 109.76972 * 118.92259 * 20 11 10 38 38 H 1.09006 * 110.01298 * 317.72994 * 23 6 4 39 39 H 1.08996 * 110.01954 * 79.07411 * 23 6 4 40 40 H 1.09005 * 117.49779 * 214.96910 * 24 3 2 41 41 H 1.09005 * 117.50266 * 359.97438 * 24 3 2 42 42 H 1.09007 * 117.49667 * 252.51390 * 25 24 3 43 43 H 1.09001 * 117.50333 * 107.48751 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.7245 2.2435 -1.2368 5 8 0.8029 3.0319 -1.2301 6 7 2.4665 2.0837 -2.3507 7 6 2.1927 2.7082 -3.6490 8 6 3.2938 2.2706 -4.6276 9 1 2.9458 1.5353 -5.3532 10 6 3.9233 3.5169 -5.2761 11 7 4.9182 4.0289 -4.3265 12 6 5.4448 5.2929 -4.3359 13 1 6.0320 5.6394 -3.4984 14 6 5.2238 6.1289 -5.4218 15 7 4.4997 5.7101 -6.4380 16 14 5.9541 7.8481 -5.4408 17 1 7.2475 7.8284 -6.1700 18 1 5.0163 8.7767 -6.1214 19 1 6.1790 8.3058 -4.0461 20 6 5.2604 2.9745 -3.3663 21 6 4.4273 1.7302 -3.7115 22 1 5.0202 0.9396 -4.1714 23 6 3.6746 1.2570 -2.4544 24 6 2.0584 2.1857 1.3372 25 6 3.3706 1.7215 0.7019 26 1 -0.3633 0.5663 -0.8575 27 1 -0.3633 -1.0258 -0.0618 28 1 -0.3633 0.4594 0.9192 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8900 31 1 1.2205 2.3811 -4.0177 32 1 2.2015 3.7933 -3.5455 33 1 3.1570 4.2708 -5.4566 34 1 4.4079 3.2450 -6.2139 35 1 4.3456 6.2942 -7.1969 36 1 5.0255 3.3065 -2.3550 37 1 6.3222 2.7393 -3.4399 38 1 4.2986 1.3959 -1.5715 39 1 3.4006 0.2069 -2.5557 40 1 1.8424 3.2540 1.3224 41 1 1.7069 1.6471 2.2173 42 1 3.8824 0.8773 1.1640 43 1 4.0178 2.4843 0.2690 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049035263.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:28 Heat of formation + Delta-G solvation = -6.291900 kcal Electronic energy + Delta-G solvation = -22928.445226 eV Core-core repulsion = 19780.961231 eV Total energy + Delta-G solvation = -3147.483995 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.77323 -40.07454 -37.84675 -36.59113 -34.06231 -32.80608 -31.80169 -31.31478 -27.75421 -27.11096 -25.62429 -24.57955 -23.37591 -22.68730 -21.72224 -20.86133 -19.79562 -18.76786 -17.76610 -17.25443 -16.92489 -16.71882 -16.28619 -15.58536 -15.25781 -14.97667 -14.71485 -14.51965 -14.15843 -13.96649 -13.73917 -13.56530 -13.35257 -13.28090 -13.02687 -12.78016 -12.76362 -12.58374 -12.44015 -12.07597 -12.02564 -11.91800 -11.71400 -11.57214 -11.45774 -11.30801 -10.97576 -10.76445 -10.65797 -9.64376 -8.84584 -7.90280 -5.25987 1.42086 1.43755 1.52525 1.54448 1.95323 2.46099 2.71550 3.27143 3.36961 3.48962 3.64100 3.70424 3.83607 3.88174 3.94093 4.03205 4.22871 4.28958 4.44525 4.51294 4.56259 4.61566 4.63678 4.72468 4.78401 4.84989 4.91753 4.95655 5.01307 5.05582 5.09184 5.15122 5.19637 5.22085 5.28852 5.36246 5.40710 5.46188 5.55613 5.74280 6.21020 6.55025 7.08621 7.12295 7.77282 8.39825 9.20339 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026317 B = 0.004777 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.686982 B = 5859.897093 C = 6083.835255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.069 4.069 3 C -0.157 4.157 4 C 0.553 3.447 5 O -0.595 6.595 6 N -0.604 5.604 7 C 0.126 3.874 8 C -0.109 4.109 9 H 0.124 0.876 10 C 0.192 3.808 11 N -0.622 5.622 12 C -0.245 4.245 13 H 0.074 0.926 14 C -0.060 4.060 15 N -0.947 5.947 16 Si 0.975 3.025 17 H -0.281 1.281 18 H -0.295 1.295 19 H -0.272 1.272 20 C 0.138 3.862 21 C -0.095 4.095 22 H 0.135 0.865 23 C 0.115 3.885 24 C -0.151 4.151 25 C -0.145 4.145 26 H 0.022 0.978 27 H 0.076 0.924 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.063 0.937 32 H 0.024 0.976 33 H 0.025 0.975 34 H 0.005 0.995 35 H 0.248 0.752 36 H 0.013 0.987 37 H 0.030 0.970 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.070 0.930 41 H 0.132 0.868 42 H 0.142 0.858 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.094 -17.406 13.118 21.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.106 4.106 3 C -0.160 4.160 4 C 0.343 3.657 5 O -0.476 6.476 6 N -0.336 5.336 7 C 0.003 3.997 8 C -0.128 4.128 9 H 0.142 0.858 10 C 0.067 3.933 11 N -0.348 5.348 12 C -0.375 4.375 13 H 0.092 0.908 14 C -0.254 4.254 15 N -0.595 5.595 16 Si 0.803 3.197 17 H -0.208 1.208 18 H -0.221 1.221 19 H -0.197 1.197 20 C 0.013 3.987 21 C -0.114 4.114 22 H 0.153 0.847 23 C -0.007 4.007 24 C -0.188 4.188 25 C -0.182 4.182 26 H 0.041 0.959 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.124 0.876 31 H 0.081 0.919 32 H 0.042 0.958 33 H 0.044 0.956 34 H 0.023 0.977 35 H 0.057 0.943 36 H 0.031 0.969 37 H 0.048 0.952 38 H 0.109 0.891 39 H 0.122 0.878 40 H 0.089 0.911 41 H 0.150 0.850 42 H 0.160 0.840 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.605 -16.810 13.070 21.452 hybrid contribution 0.080 1.987 -0.736 2.121 sum -2.525 -14.823 12.334 19.448 Atomic orbital electron populations 1.21725 0.95990 1.01987 1.01049 1.21040 0.95505 0.89539 1.04545 1.21442 1.05643 0.98289 0.90644 1.20043 0.80623 0.81512 0.83526 1.90655 1.33448 1.39184 1.84314 1.48316 1.27966 1.47764 1.09517 1.21601 0.98505 0.96264 0.83321 1.23056 0.94225 0.98440 0.97129 0.85850 1.20837 0.90511 0.91432 0.90531 1.44458 1.47275 1.09463 1.33636 1.19351 1.27028 0.89686 1.01395 0.90777 1.25648 1.01135 1.02663 0.95935 1.70146 1.43779 1.36863 1.08712 0.85117 0.77542 0.79373 0.77655 1.20788 1.22123 1.19730 1.21362 0.97038 0.88217 0.92057 1.22922 0.95675 0.97430 0.95363 0.84680 1.22250 0.84700 0.95371 0.98389 1.23065 1.01015 0.99925 0.94839 1.23254 0.89373 1.04230 1.01344 0.95868 0.90483 0.92574 0.90347 0.87604 0.91860 0.95777 0.95621 0.97683 0.94284 0.96871 0.95195 0.89085 0.87802 0.91107 0.85038 0.83959 0.90092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.83 71.98 0.71 -2.07 16 2 C -0.07 -1.08 5.81 30.60 0.18 -0.90 16 3 C -0.16 -3.53 1.22 -52.93 -0.06 -3.59 16 4 C 0.55 18.63 6.33 87.65 0.56 19.19 16 5 O -0.60 -26.09 17.31 -3.04 -0.05 -26.14 16 6 N -0.60 -19.39 3.31 -817.54 -2.70 -22.09 16 7 C 0.13 4.79 6.24 86.58 0.54 5.33 16 8 C -0.11 -3.79 4.09 -9.41 -0.04 -3.83 16 9 H 0.12 3.51 8.14 -2.38 -0.02 3.49 16 10 C 0.19 9.41 4.58 86.65 0.40 9.80 16 11 N -0.62 -32.16 3.37 -697.80 -2.35 -34.52 16 12 C -0.25 -14.13 10.23 84.03 0.86 -13.27 16 13 H 0.07 4.15 7.83 -2.91 -0.02 4.12 16 14 C -0.06 -3.51 5.48 84.86 0.46 -3.04 16 15 N -0.95 -57.69 10.40 21.65 0.23 -57.47 16 16 Si 0.97 46.96 29.55 68.60 2.03 48.98 16 17 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 18 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 19 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 20 C 0.14 5.45 6.62 86.57 0.57 6.03 16 21 C -0.09 -2.74 4.09 -9.40 -0.04 -2.78 16 22 H 0.14 3.01 8.14 -2.39 -0.02 2.99 16 23 C 0.11 2.68 5.72 86.66 0.50 3.18 16 24 C -0.15 -3.13 9.87 30.59 0.30 -2.83 16 25 C -0.15 -2.59 8.43 30.59 0.26 -2.33 16 26 H 0.02 0.57 7.62 -2.39 -0.02 0.55 16 27 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.08 1.11 7.99 -2.39 -0.02 1.09 16 30 H 0.11 1.02 8.09 -2.39 -0.02 1.00 16 31 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.02 1.16 7.47 -2.39 -0.02 1.14 16 33 H 0.03 1.46 6.60 -2.39 -0.02 1.45 16 34 H 0.01 0.28 7.91 -2.39 -0.02 0.26 16 35 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 36 H 0.01 0.54 7.47 -2.39 -0.02 0.52 16 37 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.09 1.90 5.79 -2.38 -0.01 1.89 16 39 H 0.10 1.69 7.99 -2.39 -0.02 1.67 16 40 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 41 H 0.13 1.90 8.14 -2.38 -0.02 1.88 16 42 H 0.14 1.47 8.14 -2.38 -0.02 1.45 16 43 H 0.08 1.79 7.73 -2.39 -0.02 1.78 16 Total: -1.00 -77.08 337.86 3.30 -73.77 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: 0.97 Total: 8.58 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: 5.19 Total: 8.88 kcal Atomic # 7 Polarization: -109.24 SS G_CDS: -4.83 Total: -114.08 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.05 Total: -26.14 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.98 kcal Total: -77.08 3.30 -73.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049035263.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.480 kcal (2) G-P(sol) polarization free energy of solvation -77.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds