Wall clock time and date at job start Tue Mar 31 2020 00:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.32997 * 120.00223 * 2 1 4 4 C 1.50693 * 120.00223 * 179.97438 * 3 2 1 5 5 C 1.47107 * 119.99747 * 0.02562 * 3 2 1 6 6 O 1.21618 * 119.99772 * 320.10204 * 5 3 2 7 7 N 1.34769 * 120.00049 * 140.10531 * 5 3 2 8 8 C 1.47851 * 122.22995 * 355.12596 * 7 5 3 9 9 C 1.52875 * 111.09872 * 232.50786 * 8 7 5 10 10 C 1.53875 * 111.43281 * 311.50733 * 9 8 7 11 11 C 1.51079 * 107.40625 * 56.89840 * 10 9 8 12 12 H 1.09004 * 108.73195 * 50.80227 * 11 10 9 13 13 C 1.45730 * 122.22454 * 175.14896 * 7 5 3 14 14 H 1.09002 * 111.63934 * 240.82802 * 13 7 5 15 15 C 1.53427 * 116.37403 * 9.87568 * 13 7 5 16 16 C 1.55471 * 101.67051 * 152.73202 * 15 13 7 17 17 N 1.45019 * 119.19974 * 176.07278 * 11 10 9 18 18 C 1.36938 * 126.56040 * 331.24791 * 17 11 10 19 19 H 1.07996 * 119.99968 * 359.97438 * 18 17 11 20 20 C 1.38811 * 120.00291 * 179.97438 * 18 17 11 21 21 N 1.31622 * 119.99809 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00427 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47378 * 89.99401 * 22 20 18 24 24 H 1.48503 * 109.47076 * 210.00074 * 22 20 18 25 25 H 1.48498 * 109.46753 * 329.99612 * 22 20 18 26 26 H 1.09002 * 109.47280 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46817 * 299.98907 * 1 2 3 28 28 H 1.08999 * 109.47395 * 59.98998 * 1 2 3 29 29 H 1.08001 * 120.00233 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.47706 * 303.33443 * 4 3 2 31 31 H 1.09004 * 109.47364 * 63.33373 * 4 3 2 32 32 H 1.09003 * 109.47539 * 183.32965 * 4 3 2 33 33 H 1.08998 * 109.15825 * 352.91652 * 8 7 5 34 34 H 1.08995 * 109.16448 * 112.15735 * 8 7 5 35 35 H 1.09005 * 109.17269 * 190.97673 * 9 8 7 36 36 H 1.08994 * 109.05908 * 71.96956 * 9 8 7 37 37 H 1.09003 * 109.88396 * 297.39689 * 10 9 8 38 38 H 1.09001 * 109.87648 * 176.39248 * 10 9 8 39 39 H 1.08998 * 110.98470 * 34.63601 * 15 13 7 40 40 H 1.09000 * 110.98391 * 270.82629 * 15 13 7 41 41 H 1.09001 * 109.95742 * 218.01903 * 16 15 13 42 42 H 1.08997 * 109.99218 * 96.79774 * 16 15 13 43 43 H 0.96998 * 119.99938 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6789 1.1518 0.0006 5 6 1.4364 2.4257 0.0006 6 8 0.4323 2.5484 -0.6746 7 7 1.8753 3.4569 0.7492 8 6 3.0268 3.3304 1.6679 9 6 2.6637 3.8072 3.0743 10 6 1.9641 5.1773 3.0404 11 6 0.7473 5.0416 2.1552 12 1 0.1725 4.1745 2.4807 13 6 1.2460 4.7706 0.7074 14 1 1.9436 5.5401 0.3766 15 6 -0.0838 4.8656 -0.0519 16 6 -0.7731 6.0583 0.6689 17 7 -0.1530 6.1695 2.0123 18 6 -0.3858 7.1498 2.9396 19 1 0.1270 7.1272 3.8898 20 6 -1.2810 8.1728 2.6583 21 7 -1.9056 8.2007 1.5001 22 14 -1.5992 9.5098 3.9235 23 1 -0.6420 10.6260 3.7156 24 1 -2.9879 10.0138 3.7724 25 1 -1.4206 8.9523 5.2882 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5140 -0.8899 29 1 2.0470 -0.9353 -0.0004 30 1 4.0420 0.5872 0.8594 31 1 4.0426 0.6903 -0.9175 32 1 4.0423 2.1777 0.0602 33 1 3.3353 2.2860 1.7131 34 1 3.8537 3.9316 1.2900 35 1 3.5724 3.8861 3.6712 36 1 1.9977 3.0786 3.5362 37 1 2.6392 5.9283 2.6300 38 1 1.6599 5.4631 4.0473 39 1 -0.6653 3.9509 0.0634 40 1 0.0834 5.0900 -1.1054 41 1 -1.8416 5.8665 0.7669 42 1 -0.6103 6.9778 0.1067 43 1 -2.5308 8.9157 1.3034 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049409186.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:45 Heat of formation + Delta-G solvation = 1.028704 kcal Electronic energy + Delta-G solvation = -23201.893835 eV Core-core repulsion = 20054.727285 eV Total energy + Delta-G solvation = -3147.166550 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.79926 -39.49450 -37.02787 -36.03516 -34.19300 -33.88804 -31.38460 -30.54785 -29.57752 -26.78881 -26.39396 -25.18265 -23.30835 -22.80874 -21.98774 -21.17146 -19.16116 -18.42519 -17.22865 -16.80952 -16.61860 -16.43529 -15.85515 -15.67389 -15.48084 -15.14123 -14.65003 -14.39656 -14.18182 -14.12100 -13.81401 -13.66642 -13.53778 -13.15722 -13.01520 -12.94380 -12.75113 -12.70287 -12.40089 -12.13584 -12.07232 -11.80316 -11.76762 -11.71381 -11.53135 -11.39561 -10.77460 -10.20296 -9.86006 -9.50974 -8.92632 -7.85316 -5.22721 0.59162 1.44730 1.47638 1.56044 1.95589 2.18232 2.49798 3.33155 3.34908 3.59496 3.90810 3.97926 4.02519 4.05146 4.08928 4.25100 4.32867 4.38419 4.54912 4.57163 4.58776 4.66134 4.73119 4.77033 4.88264 4.91066 4.93963 4.99889 5.05411 5.12242 5.14625 5.24709 5.28325 5.43187 5.46426 5.52347 5.57718 5.60347 5.71043 5.76334 6.16479 6.58120 7.03732 7.25769 7.73942 8.44496 9.26666 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028448 B = 0.005109 C = 0.004640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.006470 B = 5478.687363 C = 6032.621140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.077 4.077 3 C -0.197 4.197 4 C -0.113 4.113 5 C 0.544 3.456 6 O -0.574 6.574 7 N -0.596 5.596 8 C 0.098 3.902 9 C -0.121 4.121 10 C -0.112 4.112 11 C 0.154 3.846 12 H -0.007 1.007 13 C 0.130 3.870 14 H 0.080 0.920 15 C -0.115 4.115 16 C 0.183 3.817 17 N -0.612 5.612 18 C -0.234 4.234 19 H 0.089 0.911 20 C -0.070 4.070 21 N -0.956 5.956 22 Si 0.981 3.019 23 H -0.283 1.283 24 H -0.298 1.298 25 H -0.267 1.267 26 H 0.083 0.917 27 H 0.044 0.956 28 H 0.061 0.939 29 H 0.163 0.837 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.123 0.877 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.061 0.939 41 H -0.003 1.003 42 H 0.026 0.974 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.572 -16.965 0.321 23.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.096 4.096 3 C -0.200 4.200 4 C -0.169 4.169 5 C 0.336 3.664 6 O -0.455 6.455 7 N -0.328 5.328 8 C -0.023 4.023 9 C -0.159 4.159 10 C -0.150 4.150 11 C 0.046 3.954 12 H 0.011 0.989 13 C 0.024 3.976 14 H 0.098 0.902 15 C -0.154 4.154 16 C 0.058 3.942 17 N -0.336 5.336 18 C -0.363 4.363 19 H 0.107 0.893 20 C -0.262 4.262 21 N -0.605 5.605 22 Si 0.809 3.191 23 H -0.209 1.209 24 H -0.224 1.224 25 H -0.191 1.191 26 H 0.102 0.898 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.181 0.819 30 H 0.118 0.882 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.141 0.859 34 H 0.105 0.895 35 H 0.132 0.868 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.016 0.984 42 H 0.044 0.956 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.933 -16.730 0.013 22.425 hybrid contribution -1.220 1.376 0.291 1.862 sum 13.713 -15.354 0.304 20.588 Atomic orbital electron populations 1.20990 0.93918 1.02672 1.01699 1.23690 0.95862 0.97816 0.92243 1.21623 0.98306 0.91286 1.08795 1.21041 0.87782 1.03906 1.04170 1.19258 0.83871 0.84671 0.78604 1.90738 1.26860 1.83349 1.44566 1.48028 1.33325 1.09380 1.42080 1.22413 0.86825 1.04727 0.88324 1.21946 1.01980 0.94927 0.97072 1.21415 0.95689 0.98617 0.99301 1.20913 0.91065 0.88884 0.94530 0.98913 1.21985 0.93860 0.84455 0.97270 0.90244 1.22744 0.96088 0.98515 0.98049 1.21432 0.93583 0.94162 0.85015 1.44344 1.47519 1.26754 1.15005 1.19428 1.20119 1.00862 0.95897 0.89309 1.25721 0.99544 1.01580 0.99369 1.70192 1.31991 1.34452 1.23868 0.85038 0.76513 0.78966 0.78578 1.20932 1.22437 1.19125 0.89786 0.93733 0.91979 0.81933 0.88167 0.90155 0.91109 0.85943 0.89490 0.86842 0.92338 0.91606 0.92596 0.90769 0.92048 0.98431 0.95601 0.94461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.74 71.23 0.62 -2.60 16 2 C -0.08 -1.45 9.99 24.52 0.24 -1.20 16 3 C -0.20 -4.23 5.25 -18.70 -0.10 -4.33 16 4 C -0.11 -1.41 8.22 71.23 0.59 -0.83 16 5 C 0.54 17.34 6.88 86.57 0.60 17.93 16 6 O -0.57 -23.05 11.33 -4.09 -0.05 -23.09 16 7 N -0.60 -18.33 2.90 -795.07 -2.31 -20.64 16 8 C 0.10 1.99 4.70 86.08 0.40 2.40 16 9 C -0.12 -2.69 5.94 30.85 0.18 -2.51 16 10 C -0.11 -3.72 5.44 30.26 0.16 -3.56 16 11 C 0.15 6.67 2.58 45.50 0.12 6.79 16 12 H -0.01 -0.31 8.04 -2.38 -0.02 -0.33 16 13 C 0.13 5.11 3.33 46.14 0.15 5.27 16 14 H 0.08 3.12 8.14 -2.39 -0.02 3.11 16 15 C -0.12 -5.32 5.10 31.59 0.16 -5.16 16 16 C 0.18 10.14 5.47 86.87 0.48 10.61 16 17 N -0.61 -33.18 3.35 -670.52 -2.25 -35.43 16 18 C -0.23 -13.41 9.94 84.03 0.84 -12.57 16 19 H 0.09 4.76 7.30 -2.91 -0.02 4.74 16 20 C -0.07 -4.08 5.49 84.86 0.47 -3.62 16 21 N -0.96 -60.17 10.46 21.65 0.23 -59.94 16 22 Si 0.98 46.72 29.55 68.60 2.03 48.75 16 23 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 24 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 26 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.04 1.24 8.09 -2.39 -0.02 1.22 16 28 H 0.06 1.83 6.76 -2.39 -0.02 1.82 16 29 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 30 H 0.10 0.70 7.92 -2.39 -0.02 0.68 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.07 0.93 5.80 -2.39 -0.01 0.91 16 33 H 0.12 1.75 4.67 -2.39 -0.01 1.74 16 34 H 0.09 1.46 8.02 -2.39 -0.02 1.44 16 35 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.07 2.16 8.12 -2.39 -0.02 2.14 16 38 H 0.06 1.96 7.70 -2.39 -0.02 1.94 16 39 H 0.07 3.62 6.05 -2.39 -0.01 3.61 16 40 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 41 H 0.00 -0.16 7.81 -2.39 -0.02 -0.18 16 42 H 0.03 1.55 7.18 -2.39 -0.02 1.54 16 43 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -76.12 324.66 3.55 -72.58 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.98 Total: 11.14 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 4.91 Total: 6.63 kcal Atomic # 7 Polarization: -111.68 SS G_CDS: -4.33 Total: -116.01 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.05 Total: -23.09 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -76.12 3.55 -72.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049409186.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.604 kcal (2) G-P(sol) polarization free energy of solvation -76.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds