Wall clock time and date at job start Tue Mar 31 2020 00:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32995 * 120.00006 * 2 1 4 4 C 1.50693 * 119.99998 * 359.97438 * 3 2 1 5 5 C 1.47099 * 119.99952 * 180.02562 * 3 2 1 6 6 O 1.21622 * 119.99922 * 322.34884 * 5 3 2 7 7 N 1.34772 * 120.00266 * 142.35368 * 5 3 2 8 8 C 1.47855 * 122.22766 * 354.67734 * 7 5 3 9 9 C 1.52873 * 111.10192 * 232.50533 * 8 7 5 10 10 C 1.53871 * 111.43745 * 311.51548 * 9 8 7 11 11 C 1.51084 * 107.40489 * 56.88916 * 10 9 8 12 12 H 1.09004 * 108.73178 * 50.81318 * 11 10 9 13 13 C 1.45728 * 122.22748 * 174.70791 * 7 5 3 14 14 H 1.09004 * 111.63744 * 240.82521 * 13 7 5 15 15 C 1.53425 * 116.37531 * 9.87323 * 13 7 5 16 16 C 1.55472 * 101.67213 * 152.73457 * 15 13 7 17 17 N 1.45026 * 119.19332 * 176.07446 * 11 10 9 18 18 C 1.36939 * 126.55963 * 331.24946 * 17 11 10 19 19 H 1.07994 * 120.00380 * 359.97438 * 18 17 11 20 20 C 1.38812 * 119.99755 * 180.02562 * 18 17 11 21 21 N 1.31625 * 119.99780 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00256 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46846 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47231 * 119.99569 * 22 20 18 25 25 H 1.48490 * 109.47301 * 239.99770 * 22 20 18 26 26 H 1.08998 * 109.47080 * 300.00381 * 1 2 3 27 27 H 1.09001 * 109.46808 * 60.00287 * 1 2 3 28 28 H 1.08996 * 109.47073 * 179.97438 * 1 2 3 29 29 H 1.08004 * 119.99930 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.47706 * 300.54784 * 4 3 2 31 31 H 1.09004 * 109.47364 * 60.54715 * 4 3 2 32 32 H 1.09003 * 109.47539 * 180.54307 * 4 3 2 33 33 H 1.09003 * 109.15804 * 352.92368 * 8 7 5 34 34 H 1.09006 * 109.15981 * 112.15762 * 8 7 5 35 35 H 1.08995 * 109.17345 * 190.97249 * 9 8 7 36 36 H 1.09000 * 109.05024 * 71.97710 * 9 8 7 37 37 H 1.09000 * 109.87901 * 297.39644 * 10 9 8 38 38 H 1.08996 * 109.87915 * 176.38633 * 10 9 8 39 39 H 1.08995 * 110.98749 * 34.63348 * 15 13 7 40 40 H 1.09005 * 111.01701 * 270.84210 * 15 13 7 41 41 H 1.09001 * 109.96054 * 218.01864 * 16 15 13 42 42 H 1.09003 * 109.98821 * 96.79800 * 16 15 13 43 43 H 0.96998 * 119.99667 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4185 2.4568 -0.0006 5 6 3.6430 1.1518 -0.0006 6 8 4.2513 0.3177 0.6424 7 7 4.3166 2.0760 -0.7135 8 6 3.6321 3.0391 -1.6023 9 6 4.2341 3.0154 -3.0073 10 6 5.7699 3.0995 -2.9625 11 6 6.2609 1.9493 -2.1148 12 1 5.8032 1.0281 -2.4755 13 6 5.7683 2.1923 -0.6602 14 1 6.0799 3.1702 -0.2930 15 6 6.5162 1.0651 0.0636 16 6 7.8975 1.0957 -0.6494 17 7 7.6881 1.7345 -1.9721 18 6 8.6570 2.0596 -2.8836 19 1 8.3840 2.5245 -3.8193 20 6 9.9900 1.7906 -2.6052 21 7 10.3227 1.2235 -1.4649 22 14 11.3118 2.2333 -3.8487 23 1 10.6814 2.8550 -5.0409 24 1 12.2664 3.1921 -3.2363 25 1 12.0382 1.0045 -4.2576 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 2.0470 -0.9354 -0.0004 30 1 0.7848 2.5102 -0.8859 31 1 0.7989 2.5190 0.8940 32 1 2.1268 3.2853 -0.0102 33 1 2.5746 2.7815 -1.6620 34 1 3.7329 4.0423 -1.1881 35 1 3.8477 3.8606 -3.5767 36 1 3.9424 2.0899 -3.5038 37 1 6.0765 4.0458 -2.5168 38 1 6.1752 3.0163 -3.9709 39 1 6.0196 0.1068 -0.0882 40 1 6.6205 1.2845 1.1262 41 1 8.2706 0.0801 -0.7816 42 1 8.6069 1.6790 -0.0625 43 1 11.2542 1.0358 -1.2702 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049409187.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:49 Heat of formation + Delta-G solvation = 19.627776 kcal Electronic energy + Delta-G solvation = -22979.963971 eV Core-core repulsion = 19833.603937 eV Total energy + Delta-G solvation = -3146.360034 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.40773 -37.93414 -35.81758 -35.13339 -32.56899 -32.15310 -29.83156 -28.74494 -27.99999 -26.43132 -24.43246 -24.39954 -21.45498 -21.43814 -20.04825 -19.43222 -17.92493 -16.69944 -16.15801 -15.61446 -15.21795 -14.89144 -14.59979 -14.35277 -13.84667 -13.75203 -13.57928 -13.19286 -12.77102 -12.70929 -12.57519 -12.39387 -12.34226 -12.09662 -11.63133 -11.48436 -11.43731 -11.00579 -10.83941 -10.61611 -10.44623 -10.37494 -10.04099 -9.93285 -9.79713 -9.57906 -9.16476 -8.86590 -8.53112 -8.15637 -6.78548 -5.66562 -3.00718 1.52292 3.15363 3.36274 3.42160 3.47131 3.49871 4.52093 4.53852 4.82646 4.87493 5.03394 5.11531 5.18101 5.24188 5.32242 5.40505 5.46669 5.50383 5.52853 5.64946 5.66233 5.71233 5.80071 5.83152 5.91697 6.04828 6.12996 6.28368 6.33069 6.37675 6.44690 6.47916 6.62498 6.76966 6.86530 6.95734 7.25838 7.62824 7.70598 7.78740 7.88939 8.28948 8.50111 9.23076 9.86983 10.55793 11.45526 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032713 B = 0.004700 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.731155 B = 5956.050602 C = 6482.647180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.095 4.095 3 C -0.179 4.179 4 C -0.118 4.118 5 C 0.555 3.445 6 O -0.533 6.533 7 N -0.594 5.594 8 C 0.102 3.898 9 C -0.130 4.130 10 C -0.115 4.115 11 C 0.159 3.841 12 H 0.017 0.983 13 C 0.114 3.886 14 H 0.079 0.921 15 C -0.133 4.133 16 C 0.172 3.828 17 N -0.593 5.593 18 C -0.225 4.225 19 H 0.079 0.921 20 C -0.008 4.008 21 N -0.919 5.919 22 Si 0.910 3.090 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.120 0.880 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.058 0.942 41 H 0.039 0.961 42 H 0.056 0.944 43 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.144 3.580 1.008 20.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.115 4.115 3 C -0.182 4.182 4 C -0.174 4.174 5 C 0.344 3.656 6 O -0.412 6.412 7 N -0.327 5.327 8 C -0.020 4.020 9 C -0.169 4.169 10 C -0.154 4.154 11 C 0.050 3.950 12 H 0.034 0.966 13 C 0.010 3.990 14 H 0.097 0.903 15 C -0.172 4.172 16 C 0.048 3.952 17 N -0.317 5.317 18 C -0.353 4.353 19 H 0.097 0.903 20 C -0.204 4.204 21 N -0.567 5.567 22 Si 0.741 3.259 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.218 1.218 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.138 0.862 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.105 0.895 40 H 0.077 0.923 41 H 0.057 0.943 42 H 0.074 0.926 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -19.565 3.113 1.329 19.855 hybrid contribution 0.849 0.279 -0.685 1.126 sum -18.715 3.393 0.644 19.031 Atomic orbital electron populations 1.20908 0.92299 1.02746 1.02268 1.23384 0.96098 0.97571 0.94397 1.21502 0.93273 0.96615 1.06828 1.21027 0.99847 0.94486 1.02050 1.18404 0.87264 0.80661 0.79290 1.90789 1.69227 1.37455 1.43692 1.47869 1.07617 1.33652 1.43513 1.22078 0.97174 0.92456 0.90312 1.21953 0.96931 1.02200 0.95818 1.21424 0.93089 0.99604 1.01284 1.20751 0.86963 0.95100 0.92223 0.96606 1.22403 0.77338 0.99669 0.99577 0.90301 1.23028 0.97234 0.98510 0.98393 1.21741 0.91053 0.97612 0.84809 1.44093 0.99630 1.70398 1.17623 1.19040 0.85799 1.33805 0.96696 0.90325 1.24807 0.97069 1.01121 0.97436 1.69969 1.16358 1.47571 1.22789 0.86075 0.82045 0.77575 0.80248 1.20555 1.21800 1.21809 0.91031 0.91032 0.91660 0.86198 0.90990 0.91359 0.90997 0.89216 0.91715 0.90958 0.91904 0.91819 0.91536 0.89545 0.92306 0.94310 0.92615 0.93810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.92 9.16 36.01 0.33 -0.59 16 2 C -0.10 -1.05 9.82 -36.13 -0.35 -1.41 16 3 C -0.18 -2.21 5.32 -102.85 -0.55 -2.75 16 4 C -0.12 -1.02 7.15 36.00 0.26 -0.76 16 5 C 0.55 9.30 7.31 -12.67 -0.09 9.21 16 6 O -0.53 -10.92 13.50 5.26 0.07 -10.85 16 7 N -0.59 -9.66 2.90 -165.28 -0.48 -10.14 16 8 C 0.10 1.25 4.68 -3.36 -0.02 1.23 16 9 C -0.13 -1.69 5.94 -26.34 -0.16 -1.84 16 10 C -0.12 -2.01 5.44 -27.24 -0.15 -2.16 16 11 C 0.16 3.41 2.58 -68.36 -0.18 3.23 16 12 H 0.02 0.38 8.04 -51.93 -0.42 -0.03 16 13 C 0.11 2.25 3.33 -66.80 -0.22 2.03 16 14 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 15 C -0.13 -2.95 5.11 -25.20 -0.13 -3.07 16 16 C 0.17 4.47 5.47 -1.69 -0.01 4.47 16 17 N -0.59 -15.53 3.35 -163.28 -0.55 -16.07 16 18 C -0.23 -6.30 9.94 -15.06 -0.15 -6.45 16 19 H 0.08 2.11 7.30 -52.49 -0.38 1.73 16 20 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 21 N -0.92 -27.62 10.46 55.49 0.58 -27.04 16 22 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H 0.07 0.47 7.88 -51.93 -0.41 0.06 16 27 H 0.07 0.45 7.85 -51.93 -0.41 0.04 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.12 1.49 7.93 -52.48 -0.42 1.07 16 30 H 0.07 0.48 7.52 -51.93 -0.39 0.09 16 31 H 0.07 0.52 7.89 -51.93 -0.41 0.11 16 32 H 0.07 0.64 5.76 -51.93 -0.30 0.34 16 33 H 0.09 0.87 4.53 -51.93 -0.24 0.64 16 34 H 0.06 0.70 8.00 -51.93 -0.42 0.29 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 1.11 8.12 -51.93 -0.42 0.69 16 38 H 0.07 1.21 7.70 -51.93 -0.40 0.81 16 39 H 0.09 2.02 6.03 -51.93 -0.31 1.70 16 40 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.04 1.10 7.81 -51.93 -0.41 0.70 16 42 H 0.06 1.57 7.19 -51.93 -0.37 1.19 16 43 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 326.40 15.07 4.92 4.92 Total: -1.00 -32.85 326.40 -8.94 -41.79 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -6.95 Total: -0.70 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -1.51 Total: 0.80 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: -0.45 Total: -53.26 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.07 Total: -10.85 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.85 -8.94 -41.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049409187.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.413 kcal (2) G-P(sol) polarization free energy of solvation -32.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds