Wall clock time and date at job start Tue Mar 31 2020 00:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32995 * 120.00006 * 2 1 4 4 C 1.50693 * 119.99998 * 359.97438 * 3 2 1 5 5 C 1.47099 * 119.99952 * 180.02562 * 3 2 1 6 6 O 1.21622 * 119.99922 * 322.34884 * 5 3 2 7 7 N 1.34772 * 120.00266 * 142.35368 * 5 3 2 8 8 C 1.47855 * 122.22766 * 354.67734 * 7 5 3 9 9 C 1.52873 * 111.10192 * 232.50533 * 8 7 5 10 10 C 1.53871 * 111.43745 * 311.51548 * 9 8 7 11 11 C 1.51084 * 107.40489 * 56.88916 * 10 9 8 12 12 H 1.09004 * 108.73178 * 50.81318 * 11 10 9 13 13 C 1.45728 * 122.22748 * 174.70791 * 7 5 3 14 14 H 1.09004 * 111.63744 * 240.82521 * 13 7 5 15 15 C 1.53425 * 116.37531 * 9.87323 * 13 7 5 16 16 C 1.55472 * 101.67213 * 152.73457 * 15 13 7 17 17 N 1.45026 * 119.19332 * 176.07446 * 11 10 9 18 18 C 1.36939 * 126.55963 * 331.24946 * 17 11 10 19 19 H 1.07994 * 120.00380 * 359.97438 * 18 17 11 20 20 C 1.38812 * 119.99755 * 180.02562 * 18 17 11 21 21 N 1.31625 * 119.99780 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00256 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46846 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47231 * 119.99569 * 22 20 18 25 25 H 1.48490 * 109.47301 * 239.99770 * 22 20 18 26 26 H 1.08998 * 109.47080 * 300.00381 * 1 2 3 27 27 H 1.09001 * 109.46808 * 60.00287 * 1 2 3 28 28 H 1.08996 * 109.47073 * 179.97438 * 1 2 3 29 29 H 1.08004 * 119.99930 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.47706 * 300.54784 * 4 3 2 31 31 H 1.09004 * 109.47364 * 60.54715 * 4 3 2 32 32 H 1.09003 * 109.47539 * 180.54307 * 4 3 2 33 33 H 1.09003 * 109.15804 * 352.92368 * 8 7 5 34 34 H 1.09006 * 109.15981 * 112.15762 * 8 7 5 35 35 H 1.08995 * 109.17345 * 190.97249 * 9 8 7 36 36 H 1.09000 * 109.05024 * 71.97710 * 9 8 7 37 37 H 1.09000 * 109.87901 * 297.39644 * 10 9 8 38 38 H 1.08996 * 109.87915 * 176.38633 * 10 9 8 39 39 H 1.08995 * 110.98749 * 34.63348 * 15 13 7 40 40 H 1.09005 * 111.01701 * 270.84210 * 15 13 7 41 41 H 1.09001 * 109.96054 * 218.01864 * 16 15 13 42 42 H 1.09003 * 109.98821 * 96.79800 * 16 15 13 43 43 H 0.96998 * 119.99667 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4185 2.4568 -0.0006 5 6 3.6430 1.1518 -0.0006 6 8 4.2513 0.3177 0.6424 7 7 4.3166 2.0760 -0.7135 8 6 3.6321 3.0391 -1.6023 9 6 4.2341 3.0154 -3.0073 10 6 5.7699 3.0995 -2.9625 11 6 6.2609 1.9493 -2.1148 12 1 5.8032 1.0281 -2.4755 13 6 5.7683 2.1923 -0.6602 14 1 6.0799 3.1702 -0.2930 15 6 6.5162 1.0651 0.0636 16 6 7.8975 1.0957 -0.6494 17 7 7.6881 1.7345 -1.9721 18 6 8.6570 2.0596 -2.8836 19 1 8.3840 2.5245 -3.8193 20 6 9.9900 1.7906 -2.6052 21 7 10.3227 1.2235 -1.4649 22 14 11.3118 2.2333 -3.8487 23 1 10.6814 2.8550 -5.0409 24 1 12.2664 3.1921 -3.2363 25 1 12.0382 1.0045 -4.2576 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 2.0470 -0.9354 -0.0004 30 1 0.7848 2.5102 -0.8859 31 1 0.7989 2.5190 0.8940 32 1 2.1268 3.2853 -0.0102 33 1 2.5746 2.7815 -1.6620 34 1 3.7329 4.0423 -1.1881 35 1 3.8477 3.8606 -3.5767 36 1 3.9424 2.0899 -3.5038 37 1 6.0765 4.0458 -2.5168 38 1 6.1752 3.0163 -3.9709 39 1 6.0196 0.1068 -0.0882 40 1 6.6205 1.2845 1.1262 41 1 8.2706 0.0801 -0.7816 42 1 8.6069 1.6790 -0.0625 43 1 11.2542 1.0358 -1.2702 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049409187.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:48 Heat of formation + Delta-G solvation = -1.163676 kcal Electronic energy + Delta-G solvation = -22980.865556 eV Core-core repulsion = 19833.603937 eV Total energy + Delta-G solvation = -3147.261619 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.79637 -39.44579 -37.10423 -36.37964 -34.23699 -33.85837 -31.18276 -30.23842 -29.36626 -27.37614 -26.42612 -25.65379 -22.97472 -22.79836 -21.74568 -20.96896 -19.06230 -18.50886 -17.27178 -17.18308 -16.81622 -16.38819 -16.13562 -15.67048 -15.46309 -15.07008 -14.46421 -14.42359 -14.30495 -13.98296 -13.90870 -13.56070 -13.35467 -13.19983 -13.12602 -12.89548 -12.74506 -12.70987 -12.32590 -12.10971 -12.02570 -11.80800 -11.78262 -11.72290 -11.52968 -11.42275 -10.79878 -10.35727 -9.92377 -9.53427 -8.93585 -7.85838 -5.23441 0.56629 1.44730 1.46689 1.56895 1.92194 2.15758 2.49318 3.32476 3.33280 3.57391 3.89932 3.97943 4.03141 4.06411 4.08228 4.23773 4.31778 4.35687 4.53753 4.55275 4.56837 4.65215 4.72794 4.80643 4.87765 4.92224 4.99483 5.02297 5.07717 5.11825 5.13731 5.19429 5.27108 5.41929 5.46225 5.51772 5.56509 5.59917 5.70588 5.77342 6.15669 6.54472 7.03031 7.20825 7.73093 8.43753 9.26364 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032713 B = 0.004700 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.731155 B = 5956.050602 C = 6482.647180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.087 4.087 3 C -0.193 4.193 4 C -0.113 4.113 5 C 0.543 3.457 6 O -0.586 6.586 7 N -0.595 5.595 8 C 0.096 3.904 9 C -0.121 4.121 10 C -0.111 4.111 11 C 0.154 3.846 12 H -0.007 1.007 13 C 0.129 3.871 14 H 0.082 0.918 15 C -0.117 4.117 16 C 0.183 3.817 17 N -0.612 5.612 18 C -0.234 4.234 19 H 0.090 0.910 20 C -0.070 4.070 21 N -0.956 5.956 22 Si 0.982 3.018 23 H -0.260 1.260 24 H -0.291 1.291 25 H -0.296 1.296 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.125 0.875 34 H 0.089 0.911 35 H 0.115 0.885 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.061 0.939 41 H -0.002 1.002 42 H 0.027 0.973 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.718 5.896 -0.427 24.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.107 4.107 3 C -0.196 4.196 4 C -0.169 4.169 5 C 0.335 3.665 6 O -0.468 6.468 7 N -0.326 5.326 8 C -0.024 4.024 9 C -0.160 4.160 10 C -0.150 4.150 11 C 0.045 3.955 12 H 0.010 0.990 13 C 0.024 3.976 14 H 0.100 0.900 15 C -0.156 4.156 16 C 0.058 3.942 17 N -0.337 5.337 18 C -0.362 4.362 19 H 0.108 0.892 20 C -0.263 4.263 21 N -0.605 5.605 22 Si 0.810 3.190 23 H -0.184 1.184 24 H -0.218 1.218 25 H -0.223 1.223 26 H 0.105 0.895 27 H 0.112 0.888 28 H 0.091 0.909 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.142 0.858 34 H 0.107 0.893 35 H 0.133 0.867 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.016 0.984 42 H 0.045 0.955 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -23.206 5.467 -0.143 23.842 hybrid contribution 1.930 -0.548 -0.224 2.019 sum -21.276 4.919 -0.367 21.841 Atomic orbital electron populations 1.20967 0.88862 1.03905 1.03854 1.23620 0.98411 0.96196 0.92487 1.21480 0.90255 0.99045 1.08815 1.21087 0.99858 0.91777 1.04187 1.19307 0.89395 0.79580 0.78257 1.90756 1.70738 1.39445 1.45834 1.47981 1.05876 1.34540 1.44220 1.22487 0.98444 0.92554 0.88933 1.21953 0.93096 1.03898 0.97009 1.21411 0.96570 0.97469 0.99507 1.20928 0.84204 0.95908 0.94434 0.98952 1.22005 0.79973 0.98267 0.97386 0.89998 1.22752 0.95289 0.99230 0.98305 1.21431 0.92583 0.94715 0.85461 1.44359 1.01697 1.70357 1.17240 1.19480 0.86441 1.32956 0.97350 0.89187 1.25737 0.99483 1.01589 0.99485 1.70203 1.16272 1.49138 1.24906 0.84959 0.78807 0.76885 0.78384 1.18420 1.21797 1.22313 0.89530 0.88837 0.90944 0.88834 0.88020 0.89892 0.91029 0.85763 0.89318 0.86698 0.92342 0.91513 0.92546 0.90999 0.92039 0.98423 0.95478 0.94465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 9.16 71.24 0.65 -0.63 16 2 C -0.09 -1.77 9.82 24.52 0.24 -1.52 16 3 C -0.19 -4.29 5.32 -18.71 -0.10 -4.39 16 4 C -0.11 -1.42 7.15 71.23 0.51 -0.91 16 5 C 0.54 17.97 7.31 86.57 0.63 18.60 16 6 O -0.59 -24.94 13.50 -4.10 -0.06 -25.00 16 7 N -0.59 -18.61 2.90 -795.07 -2.31 -20.91 16 8 C 0.10 1.96 4.68 86.08 0.40 2.36 16 9 C -0.12 -2.68 5.94 30.85 0.18 -2.50 16 10 C -0.11 -3.70 5.44 30.26 0.16 -3.53 16 11 C 0.15 6.69 2.58 45.50 0.12 6.81 16 12 H -0.01 -0.33 8.04 -2.38 -0.02 -0.35 16 13 C 0.13 5.15 3.33 46.14 0.15 5.30 16 14 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 15 C -0.12 -5.50 5.11 31.59 0.16 -5.34 16 16 C 0.18 10.23 5.47 86.87 0.48 10.70 16 17 N -0.61 -33.40 3.35 -670.51 -2.25 -35.64 16 18 C -0.23 -13.39 9.94 84.03 0.84 -12.56 16 19 H 0.09 4.83 7.30 -2.91 -0.02 4.81 16 20 C -0.07 -4.14 5.49 84.86 0.47 -3.68 16 21 N -0.96 -60.34 10.46 21.65 0.23 -60.11 16 22 Si 0.98 46.81 29.55 68.60 2.03 48.83 16 23 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 24 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 25 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 26 H 0.09 0.75 7.88 -2.39 -0.02 0.73 16 27 H 0.09 0.67 7.85 -2.39 -0.02 0.65 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.09 2.35 7.93 -2.91 -0.02 2.33 16 30 H 0.10 0.70 7.52 -2.39 -0.02 0.68 16 31 H 0.08 0.85 7.89 -2.39 -0.02 0.83 16 32 H 0.07 0.93 5.76 -2.39 -0.01 0.91 16 33 H 0.12 1.76 4.53 -2.39 -0.01 1.74 16 34 H 0.09 1.47 8.00 -2.38 -0.02 1.45 16 35 H 0.11 1.68 8.14 -2.39 -0.02 1.67 16 36 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 2.18 8.12 -2.39 -0.02 2.16 16 38 H 0.06 1.98 7.70 -2.39 -0.02 1.96 16 39 H 0.07 3.60 6.03 -2.39 -0.01 3.59 16 40 H 0.06 2.79 8.14 -2.38 -0.02 2.77 16 41 H 0.00 -0.16 7.81 -2.39 -0.02 -0.17 16 42 H 0.03 1.64 7.19 -2.39 -0.02 1.62 16 43 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -78.07 326.40 3.53 -74.54 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 0.98 Total: 9.58 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 4.90 Total: 8.71 kcal Atomic # 7 Polarization: -112.35 SS G_CDS: -4.33 Total: -116.67 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.06 Total: -25.00 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.83 kcal Total: -78.07 3.53 -74.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049409187.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.380 kcal (2) G-P(sol) polarization free energy of solvation -78.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds