Wall clock time and date at job start Tue Mar 31 2020 00:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32995 * 119.99782 * 2 1 4 4 C 1.50698 * 120.00121 * 180.02562 * 3 2 1 5 5 C 1.47108 * 119.99603 * 0.02562 * 3 2 1 6 6 O 1.21611 * 120.00384 * 353.83372 * 5 3 2 7 7 N 1.34781 * 119.99279 * 173.82758 * 5 3 2 8 8 C 1.47663 * 134.46160 * 355.87962 * 7 5 3 9 9 C 1.53511 * 85.97838 * 204.33287 * 8 7 5 10 10 C 1.47674 * 134.45043 * 175.90263 * 7 5 3 11 11 C 1.52671 * 113.56721 * 222.23208 * 9 8 7 12 12 C 1.53344 * 109.11252 * 286.18672 * 11 9 8 13 13 N 1.46883 * 108.75528 * 307.58465 * 12 11 9 14 14 C 1.36936 * 120.46683 * 235.51990 * 13 12 11 15 15 H 1.07998 * 120.00147 * 33.35403 * 14 13 12 16 16 C 1.38810 * 119.99894 * 213.35735 * 14 13 12 17 17 N 1.31621 * 120.00047 * 12.32522 * 16 14 13 18 18 Si 1.86798 * 120.00270 * 192.32780 * 16 14 13 19 19 H 1.48502 * 109.46855 * 59.99762 * 18 16 14 20 20 H 1.48499 * 109.47502 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47124 * 299.99963 * 18 16 14 22 22 C 1.46889 * 119.06170 * 55.54351 * 13 12 11 23 23 C 1.52672 * 113.56666 * 91.01472 * 9 8 7 24 24 H 1.08998 * 109.47430 * 60.00177 * 1 2 3 25 25 H 1.09002 * 109.46781 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46976 * 299.99554 * 1 2 3 27 27 H 1.07994 * 120.00227 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.46687 * 264.58850 * 4 3 2 29 29 H 1.08996 * 109.46973 * 24.58775 * 4 3 2 30 30 H 1.09003 * 109.47181 * 144.58996 * 4 3 2 31 31 H 1.09004 * 113.79123 * 90.06667 * 8 7 5 32 32 H 1.08991 * 113.79221 * 318.59841 * 8 7 5 33 33 H 1.09001 * 113.78902 * 41.39854 * 10 7 5 34 34 H 1.08995 * 113.79377 * 269.92884 * 10 7 5 35 35 H 1.09005 * 109.53051 * 46.06784 * 11 9 8 36 36 H 1.08992 * 109.53118 * 166.29311 * 11 9 8 37 37 H 1.09000 * 109.58549 * 187.80591 * 12 11 9 38 38 H 1.08999 * 109.58854 * 67.36894 * 12 11 9 39 39 H 0.96998 * 120.00180 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.59009 * 184.67062 * 22 13 12 41 41 H 1.09001 * 109.58917 * 64.23980 * 22 13 12 42 42 H 1.08999 * 109.52851 * 193.69826 * 23 9 8 43 43 H 1.08992 * 109.53037 * 313.91817 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6789 1.1519 -0.0006 5 6 1.4363 2.4257 0.0006 6 8 0.2254 2.4287 -0.1121 7 7 2.1044 3.5895 0.1261 8 6 3.5178 3.9514 0.3537 9 6 2.9756 5.2663 0.9314 10 6 1.7160 5.0139 0.0915 11 6 3.7661 6.4970 0.4939 12 6 5.1060 6.5242 1.2392 13 7 4.8477 6.3995 2.6798 14 6 5.3218 7.3407 3.5542 15 1 5.3929 8.3742 3.2489 16 6 5.7113 6.9664 4.8329 17 7 5.8573 5.6924 5.1299 18 14 6.0280 8.2705 6.1322 19 1 4.7906 9.0618 6.3512 20 1 6.4279 7.6157 7.4037 21 1 7.1168 9.1708 5.6748 22 6 4.0740 5.2508 3.1692 23 6 2.7274 5.2151 2.4369 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 2.0470 -0.9352 -0.0004 28 1 4.0426 1.2486 1.0224 29 1 4.0421 0.2176 -0.4285 30 1 4.0420 1.9896 -0.5960 31 1 4.0925 4.0780 -0.5638 32 1 4.0199 3.3222 1.0886 33 1 0.7861 5.2290 0.6179 34 1 1.7553 5.4563 -0.9039 35 1 3.9474 6.4509 -0.5799 36 1 3.1991 7.3973 0.7306 37 1 5.6161 7.4665 1.0396 38 1 5.7265 5.6924 0.9059 39 1 6.1291 5.4308 6.0235 40 1 3.9046 5.3543 4.2410 41 1 4.6223 4.3298 2.9711 42 1 2.1268 6.0740 2.7365 43 1 2.2001 4.2950 2.6882 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050480308.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:51 Heat of formation + Delta-G solvation = 33.237658 kcal Electronic energy + Delta-G solvation = -22643.137128 eV Core-core repulsion = 19497.367263 eV Total energy + Delta-G solvation = -3145.769865 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.69420 -38.61330 -35.86373 -34.90480 -32.56392 -30.83600 -30.09941 -29.62430 -27.10581 -26.25299 -24.71954 -24.08240 -22.37512 -21.78511 -20.44314 -18.34788 -18.07250 -16.61773 -16.09063 -15.70422 -15.19277 -14.88095 -14.38912 -14.21367 -13.80578 -13.57735 -13.48302 -13.10665 -13.03602 -12.80871 -12.67937 -12.33776 -12.25543 -11.90047 -11.81703 -11.57621 -11.49093 -11.35353 -10.99360 -10.75051 -10.45902 -10.30985 -10.13323 -9.86798 -9.63942 -9.58472 -9.24021 -9.08989 -8.48717 -8.37069 -6.60415 -5.80864 -3.29896 1.42742 3.02696 3.36643 3.36874 3.42667 3.43630 4.47152 4.48365 4.67820 4.84797 5.10320 5.18715 5.23110 5.33588 5.39168 5.50607 5.55071 5.58807 5.61351 5.65650 5.71510 5.77782 5.84035 5.86874 5.95324 6.04634 6.10981 6.21040 6.28319 6.44983 6.45216 6.56598 6.62422 6.63745 6.66933 6.82544 6.94023 7.32341 7.62879 7.78129 7.91438 8.33764 8.47583 9.20951 9.82310 10.41048 11.27090 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028198 B = 0.004310 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.754963 B = 6495.652153 C = 6808.394974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.081 4.081 3 C -0.184 4.184 4 C -0.118 4.118 5 C 0.569 3.431 6 O -0.549 6.549 7 N -0.634 5.634 8 C 0.108 3.892 9 C -0.075 4.075 10 C 0.109 3.891 11 C -0.120 4.120 12 C 0.147 3.853 13 N -0.590 5.590 14 C -0.257 4.257 15 H 0.062 0.938 16 C 0.008 3.992 17 N -0.903 5.903 18 Si 0.903 3.097 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.176 3.824 23 C -0.116 4.116 24 H 0.081 0.919 25 H 0.049 0.951 26 H 0.076 0.924 27 H 0.122 0.878 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.018 0.982 39 H 0.255 0.745 40 H 0.085 0.915 41 H 0.018 0.982 42 H 0.060 0.940 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.172 -7.564 -10.924 14.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.101 4.101 3 C -0.187 4.187 4 C -0.175 4.175 5 C 0.362 3.638 6 O -0.429 6.429 7 N -0.368 5.368 8 C -0.014 4.014 9 C -0.076 4.076 10 C -0.013 4.013 11 C -0.160 4.160 12 C 0.021 3.979 13 N -0.312 5.312 14 C -0.387 4.387 15 H 0.080 0.920 16 C -0.191 4.191 17 N -0.546 5.546 18 Si 0.732 3.268 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.208 1.208 22 C 0.050 3.950 23 C -0.156 4.156 24 H 0.099 0.901 25 H 0.068 0.932 26 H 0.094 0.906 27 H 0.140 0.860 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.036 0.964 39 H 0.065 0.935 40 H 0.103 0.897 41 H 0.036 0.964 42 H 0.079 0.921 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.838 -7.819 -10.827 14.576 hybrid contribution 0.294 0.535 0.664 0.903 sum -5.544 -7.284 -10.163 13.677 Atomic orbital electron populations 1.20989 0.91910 1.00619 1.04069 1.23562 0.97106 0.96524 0.92874 1.21469 0.96555 0.92934 1.07693 1.20985 0.90932 1.02770 1.02789 1.18096 0.86510 0.82978 0.76221 1.90747 1.13777 1.87009 1.51398 1.49920 1.10840 1.05098 1.70900 1.23480 0.83262 0.95023 0.99622 1.22017 0.94022 0.94641 0.96879 1.23352 0.99551 0.78807 0.99604 1.21970 0.99112 0.96480 0.98443 1.20895 0.92447 0.98827 0.85758 1.43942 1.60147 1.26574 1.00560 1.19106 1.37132 0.88584 0.93854 0.92016 1.25179 0.98653 0.95850 0.99445 1.69971 1.50073 1.14377 1.20214 0.86380 0.78240 0.81069 0.81085 1.20962 1.21629 1.20830 1.20725 0.86615 0.89053 0.98615 1.21963 1.01437 1.00404 0.91756 0.90064 0.93238 0.90556 0.85982 0.90752 0.91678 0.91179 0.90045 0.89407 0.90446 0.90271 0.92777 0.91703 0.92667 0.96412 0.93547 0.89678 0.96414 0.92104 0.93179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 8.45 36.01 0.30 -1.12 16 2 C -0.08 -0.93 9.94 -36.12 -0.36 -1.29 16 3 C -0.18 -2.42 6.00 -102.84 -0.62 -3.04 16 4 C -0.12 -1.30 8.40 36.00 0.30 -1.00 16 5 C 0.57 9.14 7.92 -12.66 -0.10 9.04 16 6 O -0.55 -10.10 13.85 5.27 0.07 -10.02 16 7 N -0.63 -9.56 3.43 -181.63 -0.62 -10.19 16 8 C 0.11 1.53 4.99 -3.15 -0.02 1.51 16 9 C -0.07 -1.16 0.77 -154.42 -0.12 -1.28 16 10 C 0.11 1.57 7.97 -3.16 -0.03 1.55 16 11 C -0.12 -1.87 5.26 -26.72 -0.14 -2.01 16 12 C 0.15 2.84 6.39 -3.66 -0.02 2.82 16 13 N -0.59 -13.98 2.94 -172.21 -0.51 -14.49 16 14 C -0.26 -6.81 9.53 -15.06 -0.14 -6.95 16 15 H 0.06 1.61 7.86 -52.49 -0.41 1.20 16 16 C 0.01 0.21 4.99 -17.43 -0.09 0.13 16 17 N -0.90 -25.49 11.25 55.49 0.62 -24.86 16 18 Si 0.90 21.23 29.57 -169.99 -5.03 16.20 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 22 C 0.18 3.98 5.16 -3.66 -0.02 3.96 16 23 C -0.12 -2.15 5.21 -26.73 -0.14 -2.29 16 24 H 0.08 1.08 7.06 -51.93 -0.37 0.72 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.08 1.05 7.40 -51.93 -0.38 0.66 16 27 H 0.12 1.07 8.02 -52.49 -0.42 0.65 16 28 H 0.07 0.85 7.51 -51.93 -0.39 0.46 16 29 H 0.06 0.58 8.00 -51.93 -0.42 0.17 16 30 H 0.07 0.76 5.89 -51.93 -0.31 0.46 16 31 H 0.08 1.00 7.79 -51.93 -0.40 0.59 16 32 H 0.09 1.30 5.94 -51.93 -0.31 0.99 16 33 H 0.08 1.16 8.09 -51.93 -0.42 0.74 16 34 H 0.08 1.00 8.09 -51.93 -0.42 0.58 16 35 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.05 1.06 7.92 -51.93 -0.41 0.65 16 38 H 0.02 0.34 8.08 -51.93 -0.42 -0.08 16 39 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.09 2.21 6.19 -51.93 -0.32 1.89 16 41 H 0.02 0.42 7.49 -51.93 -0.39 0.03 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.05 0.92 8.01 -51.93 -0.42 0.50 16 LS Contribution 333.56 15.07 5.03 5.03 Total: -1.00 -29.99 333.56 -8.65 -38.64 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -7.03 Total: -0.33 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -1.18 Total: 0.02 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: -0.50 Total: -49.54 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.07 Total: -10.02 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.99 -8.65 -38.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050480308.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.876 kcal (2) G-P(sol) polarization free energy of solvation -29.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds