Wall clock time and date at job start Tue Mar 31 2020 00:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32995 * 119.99782 * 2 1 4 4 C 1.50698 * 120.00121 * 180.02562 * 3 2 1 5 5 C 1.47108 * 119.99603 * 0.02562 * 3 2 1 6 6 O 1.21611 * 120.00384 * 353.83372 * 5 3 2 7 7 N 1.34781 * 119.99279 * 173.82758 * 5 3 2 8 8 C 1.47663 * 134.46160 * 355.87962 * 7 5 3 9 9 C 1.53511 * 85.97838 * 204.33287 * 8 7 5 10 10 C 1.47674 * 134.45043 * 175.90263 * 7 5 3 11 11 C 1.52671 * 113.56721 * 222.23208 * 9 8 7 12 12 C 1.53344 * 109.11252 * 286.18672 * 11 9 8 13 13 N 1.46883 * 108.75528 * 307.58465 * 12 11 9 14 14 C 1.36936 * 120.46683 * 235.51990 * 13 12 11 15 15 H 1.07998 * 120.00147 * 33.35403 * 14 13 12 16 16 C 1.38810 * 119.99894 * 213.35735 * 14 13 12 17 17 N 1.31621 * 120.00047 * 12.32522 * 16 14 13 18 18 Si 1.86798 * 120.00270 * 192.32780 * 16 14 13 19 19 H 1.48502 * 109.46855 * 59.99762 * 18 16 14 20 20 H 1.48499 * 109.47502 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47124 * 299.99963 * 18 16 14 22 22 C 1.46889 * 119.06170 * 55.54351 * 13 12 11 23 23 C 1.52672 * 113.56666 * 91.01472 * 9 8 7 24 24 H 1.08998 * 109.47430 * 60.00177 * 1 2 3 25 25 H 1.09002 * 109.46781 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46976 * 299.99554 * 1 2 3 27 27 H 1.07994 * 120.00227 * 180.02562 * 2 1 3 28 28 H 1.08995 * 109.46687 * 264.58850 * 4 3 2 29 29 H 1.08996 * 109.46973 * 24.58775 * 4 3 2 30 30 H 1.09003 * 109.47181 * 144.58996 * 4 3 2 31 31 H 1.09004 * 113.79123 * 90.06667 * 8 7 5 32 32 H 1.08991 * 113.79221 * 318.59841 * 8 7 5 33 33 H 1.09001 * 113.78902 * 41.39854 * 10 7 5 34 34 H 1.08995 * 113.79377 * 269.92884 * 10 7 5 35 35 H 1.09005 * 109.53051 * 46.06784 * 11 9 8 36 36 H 1.08992 * 109.53118 * 166.29311 * 11 9 8 37 37 H 1.09000 * 109.58549 * 187.80591 * 12 11 9 38 38 H 1.08999 * 109.58854 * 67.36894 * 12 11 9 39 39 H 0.96998 * 120.00180 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.59009 * 184.67062 * 22 13 12 41 41 H 1.09001 * 109.58917 * 64.23980 * 22 13 12 42 42 H 1.08999 * 109.52851 * 193.69826 * 23 9 8 43 43 H 1.08992 * 109.53037 * 313.91817 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6789 1.1519 -0.0006 5 6 1.4363 2.4257 0.0006 6 8 0.2254 2.4287 -0.1121 7 7 2.1044 3.5895 0.1261 8 6 3.5178 3.9514 0.3537 9 6 2.9756 5.2663 0.9314 10 6 1.7160 5.0139 0.0915 11 6 3.7661 6.4970 0.4939 12 6 5.1060 6.5242 1.2392 13 7 4.8477 6.3995 2.6798 14 6 5.3218 7.3407 3.5542 15 1 5.3929 8.3742 3.2489 16 6 5.7113 6.9664 4.8329 17 7 5.8573 5.6924 5.1299 18 14 6.0280 8.2705 6.1322 19 1 4.7906 9.0618 6.3512 20 1 6.4279 7.6157 7.4037 21 1 7.1168 9.1708 5.6748 22 6 4.0740 5.2508 3.1692 23 6 2.7274 5.2151 2.4369 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5137 0.8900 27 1 2.0470 -0.9352 -0.0004 28 1 4.0426 1.2486 1.0224 29 1 4.0421 0.2176 -0.4285 30 1 4.0420 1.9896 -0.5960 31 1 4.0925 4.0780 -0.5638 32 1 4.0199 3.3222 1.0886 33 1 0.7861 5.2290 0.6179 34 1 1.7553 5.4563 -0.9039 35 1 3.9474 6.4509 -0.5799 36 1 3.1991 7.3973 0.7306 37 1 5.6161 7.4665 1.0396 38 1 5.7265 5.6924 0.9059 39 1 6.1291 5.4308 6.0235 40 1 3.9046 5.3543 4.2410 41 1 4.6223 4.3298 2.9711 42 1 2.1268 6.0740 2.7365 43 1 2.2001 4.2950 2.6882 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050480308.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:50 Heat of formation + Delta-G solvation = 16.249256 kcal Electronic energy + Delta-G solvation = -22643.873801 eV Core-core repulsion = 19497.367263 eV Total energy + Delta-G solvation = -3146.506537 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.92482 -39.86523 -37.48932 -35.92322 -34.28680 -32.24564 -31.67488 -30.86952 -28.53143 -27.40000 -26.13062 -25.38189 -23.93510 -23.11558 -21.87414 -19.72901 -19.35476 -18.28397 -17.36687 -16.97259 -16.72584 -16.27379 -15.73211 -15.44130 -15.22228 -15.15424 -14.85095 -14.50149 -14.12273 -14.01781 -13.80347 -13.69911 -13.38807 -13.22216 -13.07966 -12.93485 -12.79958 -12.71633 -12.55853 -12.37423 -12.22283 -12.00565 -11.79851 -11.27128 -11.25026 -11.14140 -10.50714 -10.44670 -10.11665 -9.50535 -8.53730 -7.83599 -5.34898 0.43018 1.48464 1.50420 1.56491 1.89860 2.23650 2.53333 3.28126 3.40153 3.51767 3.74716 3.90042 3.95188 4.04654 4.20330 4.34980 4.39165 4.49440 4.54866 4.58231 4.66179 4.74220 4.75953 4.80130 4.82067 4.85577 4.89057 4.93109 5.06562 5.10540 5.13098 5.25259 5.27808 5.34215 5.43854 5.50565 5.56460 5.67822 5.69875 5.78286 6.46611 6.74334 7.15540 7.21033 7.91900 8.44043 9.21319 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028198 B = 0.004310 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.754963 B = 6495.652153 C = 6808.394974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.066 4.066 3 C -0.207 4.207 4 C -0.112 4.112 5 C 0.557 3.443 6 O -0.583 6.583 7 N -0.637 5.637 8 C 0.117 3.883 9 C -0.077 4.077 10 C 0.115 3.885 11 C -0.106 4.106 12 C 0.142 3.858 13 N -0.608 5.608 14 C -0.264 4.264 15 H 0.063 0.937 16 C -0.044 4.044 17 N -0.933 5.933 18 Si 0.962 3.038 19 H -0.280 1.280 20 H -0.296 1.296 21 H -0.274 1.274 22 C 0.187 3.813 23 C -0.101 4.101 24 H 0.064 0.936 25 H 0.077 0.923 26 H 0.053 0.947 27 H 0.158 0.842 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.112 0.888 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.024 0.976 39 H 0.249 0.751 40 H 0.044 0.956 41 H 0.004 0.996 42 H 0.050 0.950 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.877 -7.904 -12.897 15.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.086 4.086 3 C -0.210 4.210 4 C -0.169 4.169 5 C 0.352 3.648 6 O -0.466 6.466 7 N -0.371 5.371 8 C -0.004 4.004 9 C -0.078 4.078 10 C -0.007 4.007 11 C -0.145 4.145 12 C 0.017 3.983 13 N -0.332 5.332 14 C -0.395 4.395 15 H 0.081 0.919 16 C -0.240 4.240 17 N -0.579 5.579 18 Si 0.790 3.210 19 H -0.207 1.207 20 H -0.222 1.222 21 H -0.200 1.200 22 C 0.061 3.939 23 C -0.140 4.140 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.071 0.929 27 H 0.175 0.825 28 H 0.083 0.917 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.130 0.870 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.126 0.874 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.042 0.958 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.022 0.978 42 H 0.069 0.931 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.533 -8.135 -12.831 16.169 hybrid contribution 0.167 0.624 1.259 1.415 sum -5.366 -7.512 -11.572 14.803 Atomic orbital electron populations 1.20946 0.92612 1.01810 1.02151 1.23929 0.96816 0.97489 0.90334 1.21599 0.97693 0.92047 1.09616 1.20955 0.89299 1.04151 1.02448 1.18678 0.86400 0.84079 0.75688 1.90729 1.15203 1.87572 1.53135 1.49999 1.11291 1.05251 1.70523 1.23524 0.82970 0.93414 1.00517 1.21888 0.95447 0.95812 0.94648 1.23370 0.98129 0.78684 1.00544 1.21829 0.96456 0.96043 1.00171 1.21081 0.94800 0.98970 0.83451 1.44188 1.60533 1.26148 1.02287 1.19440 1.36058 0.89355 0.94632 0.91887 1.25867 0.99300 0.97494 1.01367 1.70122 1.51610 1.16033 1.20109 0.85430 0.78181 0.78869 0.78472 1.20657 1.22216 1.19952 1.20433 0.88394 0.88291 0.96766 1.21686 0.98569 0.99749 0.94041 0.91713 0.90387 0.92853 0.82453 0.91659 0.89261 0.91114 0.87050 0.90383 0.91526 0.87400 0.88717 0.92163 0.92741 0.95802 0.94218 0.93795 0.97837 0.93106 0.93502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.71 8.45 71.24 0.60 -2.11 16 2 C -0.07 -1.38 9.94 24.52 0.24 -1.13 16 3 C -0.21 -5.10 6.00 -18.70 -0.11 -5.21 16 4 C -0.11 -2.20 8.40 71.24 0.60 -1.60 16 5 C 0.56 17.43 7.92 86.57 0.69 18.12 16 6 O -0.58 -21.50 13.85 -4.07 -0.06 -21.55 16 7 N -0.64 -18.22 3.43 -846.80 -2.90 -21.12 16 8 C 0.12 3.04 4.99 86.32 0.43 3.47 16 9 C -0.08 -2.25 0.77 -52.03 -0.04 -2.29 16 10 C 0.11 3.05 7.97 86.31 0.69 3.74 16 11 C -0.11 -2.98 5.26 30.60 0.16 -2.82 16 12 C 0.14 5.25 6.39 86.42 0.55 5.81 16 13 N -0.61 -28.95 2.94 -698.74 -2.05 -31.01 16 14 C -0.26 -14.12 9.53 84.03 0.80 -13.32 16 15 H 0.06 3.28 7.86 -2.91 -0.02 3.26 16 16 C -0.04 -2.43 4.99 84.86 0.42 -2.01 16 17 N -0.93 -54.26 11.25 21.65 0.24 -54.02 16 18 Si 0.96 44.24 29.57 68.60 2.03 46.27 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 22 C 0.19 8.69 5.16 86.42 0.45 9.14 16 23 C -0.10 -3.77 5.21 30.60 0.16 -3.61 16 24 H 0.06 1.71 7.06 -2.39 -0.02 1.69 16 25 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.05 1.47 7.40 -2.39 -0.02 1.45 16 27 H 0.16 2.12 8.02 -2.91 -0.02 2.10 16 28 H 0.06 1.39 7.51 -2.39 -0.02 1.37 16 29 H 0.09 1.30 8.00 -2.39 -0.02 1.28 16 30 H 0.07 1.35 5.89 -2.39 -0.01 1.34 16 31 H 0.11 2.27 7.79 -2.38 -0.02 2.26 16 32 H 0.08 2.21 5.94 -2.39 -0.01 2.20 16 33 H 0.07 1.93 8.09 -2.39 -0.02 1.91 16 34 H 0.11 2.31 8.09 -2.39 -0.02 2.29 16 35 H 0.09 1.98 8.12 -2.38 -0.02 1.96 16 36 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.05 2.00 7.92 -2.39 -0.02 1.98 16 38 H 0.02 0.86 8.08 -2.39 -0.02 0.84 16 39 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 40 H 0.04 2.39 6.19 -2.39 -0.01 2.37 16 41 H 0.00 0.17 7.49 -2.39 -0.02 0.16 16 42 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.05 1.75 8.01 -2.39 -0.02 1.73 16 Total: -1.00 -66.97 333.56 3.88 -63.09 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 0.98 Total: 12.17 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 5.64 Total: 6.17 kcal Atomic # 7 Polarization: -101.43 SS G_CDS: -4.71 Total: -106.15 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.06 Total: -21.55 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -66.97 3.88 -63.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050480308.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.341 kcal (2) G-P(sol) polarization free energy of solvation -66.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds