Wall clock time and date at job start Tue Mar 31 2020 00:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 119.99448 * 2 1 4 4 C 1.52992 * 109.47377 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.46990 * 239.99625 * 3 2 1 6 6 C 1.50702 * 109.47150 * 119.99852 * 3 2 1 7 7 O 1.21277 * 119.99914 * 0.02562 * 6 3 2 8 8 N 1.34781 * 119.99712 * 179.97438 * 6 3 2 9 9 C 1.47283 * 136.54912 * 0.02562 * 8 6 3 10 10 C 1.54082 * 87.60699 * 151.38190 * 9 8 6 11 11 H 1.09004 * 115.04128 * 141.62765 * 10 9 8 12 12 C 1.53056 * 111.39478 * 273.97274 * 10 9 8 13 13 C 1.52702 * 109.28113 * 142.28859 * 12 10 9 14 14 N 1.46540 * 108.49111 * 301.79519 * 13 12 10 15 15 C 1.36933 * 119.73766 * 236.39743 * 14 13 12 16 16 H 1.07997 * 120.00172 * 151.44697 * 15 14 13 17 17 C 1.38810 * 120.00181 * 331.44861 * 15 14 13 18 18 N 1.31625 * 120.00173 * 335.26389 * 17 15 14 19 19 Si 1.86793 * 120.00354 * 155.26330 * 17 15 14 20 20 H 1.48502 * 109.47581 * 180.02562 * 19 17 15 21 21 H 1.48498 * 109.47222 * 59.99932 * 19 17 15 22 22 H 1.48499 * 109.47256 * 299.99823 * 19 17 15 23 23 C 1.45700 * 120.52441 * 56.12639 * 14 13 12 24 24 C 1.46466 * 136.53622 * 179.97438 * 8 6 3 25 25 H 1.08996 * 111.44028 * 97.10013 * 24 8 6 26 26 H 1.08001 * 119.99538 * 180.02562 * 1 2 3 27 27 H 1.07994 * 120.00472 * 0.02562 * 1 2 3 28 28 H 1.07994 * 120.00472 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47519 * 180.02562 * 4 3 2 30 30 H 1.09004 * 109.47512 * 299.99729 * 4 3 2 31 31 H 1.09004 * 109.47428 * 60.00568 * 4 3 2 32 32 H 1.08997 * 109.47538 * 300.00273 * 5 3 2 33 33 H 1.09001 * 109.47563 * 60.00322 * 5 3 2 34 34 H 1.09000 * 109.47433 * 180.02562 * 5 3 2 35 35 H 1.09002 * 113.52971 * 266.06992 * 9 8 6 36 36 H 1.09002 * 113.52347 * 36.63326 * 9 8 6 37 37 H 1.09003 * 109.51718 * 262.32539 * 12 10 9 38 38 H 1.09004 * 109.51337 * 22.48653 * 12 10 9 39 39 H 1.08997 * 109.62342 * 182.01188 * 13 12 10 40 40 H 1.09003 * 109.55693 * 61.54054 * 13 12 10 41 41 H 0.97004 * 119.99584 * 354.29299 * 18 17 15 42 42 H 1.09000 * 108.79295 * 81.16032 * 23 14 13 43 43 H 1.09000 * 108.78499 * 199.49029 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 1.0691 2.4680 -0.0006 5 6 2.9430 1.3862 -1.2492 6 6 2.9297 1.3851 1.2305 7 8 2.9352 0.4720 2.0286 8 7 3.6992 2.4710 1.4435 9 6 3.9707 3.7417 0.7501 10 6 4.2648 4.3580 2.1313 11 1 5.0921 5.0675 2.1532 12 6 2.9840 4.8574 2.8041 13 6 3.0592 4.5762 4.3031 14 7 3.2417 3.1352 4.4970 15 6 2.3505 2.4351 5.2655 16 1 2.1730 1.3882 5.0682 17 6 1.6751 3.0708 6.2983 18 7 2.1931 4.1410 6.8629 19 14 0.0310 2.4076 6.8867 20 1 -0.4802 3.2597 7.9904 21 1 0.2046 1.0160 7.3749 22 1 -0.9390 2.4204 5.7624 23 6 4.3606 2.4405 3.8739 24 6 4.6425 2.9208 2.4697 25 1 5.6731 2.7129 2.1821 26 1 -0.5399 -0.9354 0.0004 27 1 -0.5400 0.9352 -0.0004 28 1 1.8500 -0.9352 0.0004 29 1 1.6140 3.4120 -0.0011 30 1 0.4428 2.4101 -0.8909 31 1 0.4421 2.4105 0.8892 32 1 3.6514 0.5578 -1.2492 33 1 2.3165 1.3285 -2.1393 34 1 3.4883 2.3300 -1.2490 35 1 4.8420 3.7031 0.0962 36 1 3.0941 4.1662 0.2607 37 1 2.8800 5.9298 2.6384 38 1 2.1241 4.3378 2.3812 39 1 2.1345 4.8974 4.7826 40 1 3.9034 5.1149 4.7335 41 1 3.0830 4.4373 6.6154 42 1 5.2516 2.5929 4.4829 43 1 4.1370 1.3742 3.8405 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084577669.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:12 Heat of formation + Delta-G solvation = 51.201057 kcal Electronic energy + Delta-G solvation = -23617.918842 eV Core-core repulsion = 20472.927929 eV Total energy + Delta-G solvation = -3144.990914 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.90764 -38.60038 -35.92807 -35.54279 -31.90038 -30.96052 -30.86649 -28.48836 -27.43849 -26.83765 -24.14431 -23.56151 -22.93590 -21.14418 -20.36344 -18.48713 -17.74967 -17.16299 -16.31081 -16.04224 -15.64038 -14.79416 -14.43888 -14.17719 -13.90739 -13.51642 -13.40210 -13.34953 -13.12326 -12.74832 -12.34383 -12.18899 -12.11310 -11.91592 -11.77394 -11.57474 -11.24181 -10.93959 -10.72796 -10.66563 -10.63511 -10.43206 -10.05133 -9.91517 -9.76040 -9.46178 -9.21880 -8.91547 -8.35191 -8.19740 -6.75987 -5.96631 -3.11780 2.33020 3.08405 3.23052 3.57579 3.59303 3.77979 4.53281 4.56998 4.65069 4.70032 4.95815 5.02585 5.12042 5.26283 5.31307 5.40389 5.40999 5.51014 5.51554 5.61523 5.64572 5.67959 5.71955 5.84162 5.91849 5.95721 6.00032 6.10113 6.15185 6.25609 6.39692 6.49503 6.55664 6.68450 6.77319 6.84483 6.92625 7.10222 7.25351 8.18083 8.21875 8.62845 8.70217 9.25501 9.97447 10.36131 11.31750 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016738 B = 0.007400 C = 0.005912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.402177 B = 3782.765778 C = 4735.291547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.121 4.121 3 C -0.050 4.050 4 C -0.145 4.145 5 C -0.134 4.134 6 C 0.557 3.443 7 O -0.525 6.525 8 N -0.628 5.628 9 C 0.091 3.909 10 C -0.111 4.111 11 H 0.092 0.908 12 C -0.117 4.117 13 C 0.150 3.850 14 N -0.588 5.588 15 C -0.336 4.336 16 H 0.055 0.945 17 C -0.026 4.026 18 N -0.921 5.921 19 Si 1.061 2.939 20 H -0.286 1.286 21 H -0.293 1.293 22 H -0.295 1.295 23 C 0.145 3.855 24 C 0.126 3.874 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.111 0.889 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.017 0.983 41 H 0.267 0.733 42 H 0.015 0.985 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.163 0.406 -17.880 18.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.139 4.139 3 C -0.053 4.053 4 C -0.202 4.202 5 C -0.191 4.191 6 C 0.346 3.654 7 O -0.400 6.400 8 N -0.364 5.364 9 C -0.032 4.032 10 C -0.131 4.131 11 H 0.110 0.890 12 C -0.156 4.156 13 C 0.024 3.976 14 N -0.311 5.311 15 C -0.466 4.466 16 H 0.073 0.927 17 C -0.227 4.227 18 N -0.562 5.562 19 Si 0.891 3.109 20 H -0.212 1.212 21 H -0.220 1.220 22 H -0.223 1.223 23 C 0.018 3.982 24 C 0.022 3.978 25 H 0.092 0.908 26 H 0.116 0.884 27 H 0.121 0.879 28 H 0.129 0.871 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.102 0.898 40 H 0.035 0.965 41 H 0.078 0.922 42 H 0.033 0.967 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.746 -0.062 -16.427 16.444 hybrid contribution 1.435 -0.431 -1.172 1.902 sum 2.181 -0.494 -17.598 17.740 Atomic orbital electron populations 1.23929 0.95887 1.02118 1.01136 1.22465 0.95626 0.96530 0.99321 1.19818 0.95601 0.95763 0.94095 1.22010 0.98724 0.96723 1.02759 1.21792 0.99171 1.02351 0.95788 1.19729 0.79261 0.79904 0.86521 1.90707 1.65796 1.36923 1.46576 1.49348 1.43435 1.17815 1.25798 1.23447 1.00273 0.83187 0.96274 1.22807 0.99803 0.95841 0.94611 0.88968 1.21815 0.95050 0.98843 0.99924 1.20760 1.00559 0.85284 0.91042 1.43516 1.27502 1.03828 1.56247 1.20027 1.19535 0.96373 1.10647 0.92729 1.25744 1.05014 0.98715 0.93256 1.70793 1.17871 1.27516 1.39996 0.83573 0.76228 0.75186 0.75877 1.21158 1.22038 1.22258 1.20226 0.90956 0.97988 0.88998 1.22315 0.91893 0.91796 0.91836 0.90796 0.88375 0.87929 0.87105 0.91642 0.91579 0.91400 0.92246 0.91582 0.91931 0.90449 0.90455 0.92584 0.92009 0.89753 0.96523 0.92200 0.96746 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.52 13.70 29.02 0.40 -2.13 16 2 C -0.12 -1.74 8.00 -36.03 -0.29 -2.03 16 3 C -0.05 -0.70 0.77 -156.82 -0.12 -0.82 16 4 C -0.15 -1.87 7.01 37.15 0.26 -1.61 16 5 C -0.13 -1.44 8.34 37.16 0.31 -1.13 16 6 C 0.56 10.35 6.66 -10.98 -0.07 10.28 16 7 O -0.52 -12.26 15.28 5.56 0.08 -12.17 16 8 N -0.63 -10.53 3.22 -187.75 -0.60 -11.14 16 9 C 0.09 1.14 5.70 -11.54 -0.07 1.07 16 10 C -0.11 -1.66 4.57 -90.33 -0.41 -2.07 16 11 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 12 C -0.12 -2.10 5.68 -26.85 -0.15 -2.25 16 13 C 0.15 3.48 4.61 -4.17 -0.02 3.46 16 14 N -0.59 -15.22 2.87 -175.19 -0.50 -15.72 16 15 C -0.34 -9.95 9.41 -15.06 -0.14 -10.09 16 16 H 0.05 1.73 7.89 -52.49 -0.41 1.31 16 17 C -0.03 -0.78 4.65 -17.43 -0.08 -0.86 16 18 N -0.92 -28.08 12.35 55.49 0.69 -27.39 16 19 Si 1.06 26.69 29.98 -169.99 -5.10 21.60 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.30 -7.22 7.11 56.52 0.40 -6.82 16 23 C 0.15 3.31 6.16 -5.45 -0.03 3.28 16 24 C 0.13 2.21 4.03 -77.72 -0.31 1.90 16 25 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.10 1.13 8.06 -52.49 -0.42 0.71 16 27 H 0.10 1.26 5.69 -52.49 -0.30 0.96 16 28 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 29 H 0.06 0.79 5.24 -51.93 -0.27 0.52 16 30 H 0.07 0.69 7.50 -51.93 -0.39 0.30 16 31 H 0.07 1.04 7.50 -51.93 -0.39 0.65 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.61 6.40 -51.93 -0.33 0.28 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.87 5.65 -51.93 -0.29 0.58 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 1.21 7.68 -51.93 -0.40 0.81 16 39 H 0.08 2.23 6.11 -51.93 -0.32 1.91 16 40 H 0.02 0.39 7.95 -51.93 -0.41 -0.02 16 41 H 0.27 8.17 6.76 -40.82 -0.28 7.89 16 42 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 1.80 6.45 -51.93 -0.34 1.47 16 LS Contribution 328.22 15.07 4.95 4.95 Total: -1.00 -34.27 328.22 -7.95 -42.22 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -6.73 Total: 0.67 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -0.73 Total: -3.02 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: -0.42 Total: -54.25 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.08 Total: -12.17 kcal Atomic # 14 Polarization: 26.69 SS G_CDS: -5.10 Total: 21.60 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.27 -7.95 -42.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084577669.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.419 kcal (2) G-P(sol) polarization free energy of solvation -34.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds