Wall clock time and date at job start Tue Mar 31 2020 00:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 119.99448 * 2 1 4 4 C 1.52992 * 109.47377 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.46990 * 239.99625 * 3 2 1 6 6 C 1.50702 * 109.47150 * 119.99852 * 3 2 1 7 7 O 1.21277 * 119.99914 * 0.02562 * 6 3 2 8 8 N 1.34781 * 119.99712 * 179.97438 * 6 3 2 9 9 C 1.47283 * 136.54912 * 0.02562 * 8 6 3 10 10 C 1.54082 * 87.60699 * 151.38190 * 9 8 6 11 11 H 1.09004 * 115.04128 * 141.62765 * 10 9 8 12 12 C 1.53056 * 111.39478 * 273.97274 * 10 9 8 13 13 C 1.52702 * 109.28113 * 142.28859 * 12 10 9 14 14 N 1.46540 * 108.49111 * 301.79519 * 13 12 10 15 15 C 1.36933 * 119.73766 * 236.39743 * 14 13 12 16 16 H 1.07997 * 120.00172 * 151.44697 * 15 14 13 17 17 C 1.38810 * 120.00181 * 331.44861 * 15 14 13 18 18 N 1.31625 * 120.00173 * 335.26389 * 17 15 14 19 19 Si 1.86793 * 120.00354 * 155.26330 * 17 15 14 20 20 H 1.48502 * 109.47581 * 180.02562 * 19 17 15 21 21 H 1.48498 * 109.47222 * 59.99932 * 19 17 15 22 22 H 1.48499 * 109.47256 * 299.99823 * 19 17 15 23 23 C 1.45700 * 120.52441 * 56.12639 * 14 13 12 24 24 C 1.46466 * 136.53622 * 179.97438 * 8 6 3 25 25 H 1.08996 * 111.44028 * 97.10013 * 24 8 6 26 26 H 1.08001 * 119.99538 * 180.02562 * 1 2 3 27 27 H 1.07994 * 120.00472 * 0.02562 * 1 2 3 28 28 H 1.07994 * 120.00472 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.47519 * 180.02562 * 4 3 2 30 30 H 1.09004 * 109.47512 * 299.99729 * 4 3 2 31 31 H 1.09004 * 109.47428 * 60.00568 * 4 3 2 32 32 H 1.08997 * 109.47538 * 300.00273 * 5 3 2 33 33 H 1.09001 * 109.47563 * 60.00322 * 5 3 2 34 34 H 1.09000 * 109.47433 * 180.02562 * 5 3 2 35 35 H 1.09002 * 113.52971 * 266.06992 * 9 8 6 36 36 H 1.09002 * 113.52347 * 36.63326 * 9 8 6 37 37 H 1.09003 * 109.51718 * 262.32539 * 12 10 9 38 38 H 1.09004 * 109.51337 * 22.48653 * 12 10 9 39 39 H 1.08997 * 109.62342 * 182.01188 * 13 12 10 40 40 H 1.09003 * 109.55693 * 61.54054 * 13 12 10 41 41 H 0.97004 * 119.99584 * 354.29299 * 18 17 15 42 42 H 1.09000 * 108.79295 * 81.16032 * 23 14 13 43 43 H 1.09000 * 108.78499 * 199.49029 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 1.0691 2.4680 -0.0006 5 6 2.9430 1.3862 -1.2492 6 6 2.9297 1.3851 1.2305 7 8 2.9352 0.4720 2.0286 8 7 3.6992 2.4710 1.4435 9 6 3.9707 3.7417 0.7501 10 6 4.2648 4.3580 2.1313 11 1 5.0921 5.0675 2.1532 12 6 2.9840 4.8574 2.8041 13 6 3.0592 4.5762 4.3031 14 7 3.2417 3.1352 4.4970 15 6 2.3505 2.4351 5.2655 16 1 2.1730 1.3882 5.0682 17 6 1.6751 3.0708 6.2983 18 7 2.1931 4.1410 6.8629 19 14 0.0310 2.4076 6.8867 20 1 -0.4802 3.2597 7.9904 21 1 0.2046 1.0160 7.3749 22 1 -0.9390 2.4204 5.7624 23 6 4.3606 2.4405 3.8739 24 6 4.6425 2.9208 2.4697 25 1 5.6731 2.7129 2.1821 26 1 -0.5399 -0.9354 0.0004 27 1 -0.5400 0.9352 -0.0004 28 1 1.8500 -0.9352 0.0004 29 1 1.6140 3.4120 -0.0011 30 1 0.4428 2.4101 -0.8909 31 1 0.4421 2.4105 0.8892 32 1 3.6514 0.5578 -1.2492 33 1 2.3165 1.3285 -2.1393 34 1 3.4883 2.3300 -1.2490 35 1 4.8420 3.7031 0.0962 36 1 3.0941 4.1662 0.2607 37 1 2.8800 5.9298 2.6384 38 1 2.1241 4.3378 2.3812 39 1 2.1345 4.8974 4.7826 40 1 3.9034 5.1149 4.7335 41 1 3.0830 4.4373 6.6154 42 1 5.2516 2.5929 4.4829 43 1 4.1370 1.3742 3.8405 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084577669.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:45:11 Heat of formation + Delta-G solvation = 28.378357 kcal Electronic energy + Delta-G solvation = -23618.908509 eV Core-core repulsion = 20472.927929 eV Total energy + Delta-G solvation = -3145.980580 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.22602 -39.93494 -37.44359 -37.19520 -33.72481 -32.69801 -32.09005 -29.92154 -28.53982 -28.36795 -25.79833 -25.02227 -24.37137 -22.66155 -21.78426 -19.86156 -19.54828 -18.67018 -17.59767 -17.40106 -17.02938 -16.12914 -16.08901 -15.81961 -15.50266 -15.33418 -14.88173 -14.62708 -14.53884 -14.15647 -13.62596 -13.46702 -13.31126 -13.22472 -12.98059 -12.85348 -12.79401 -12.62090 -12.35662 -12.11152 -11.99526 -11.95468 -11.77769 -11.68571 -11.44578 -11.06896 -10.62568 -10.51721 -10.23101 -9.59622 -8.91648 -8.28591 -5.42870 1.23765 1.48655 1.55084 1.74604 1.76215 2.01418 2.58086 3.13483 3.34088 3.45256 3.54018 3.64069 3.82839 3.97707 4.02955 4.12951 4.27296 4.32846 4.39914 4.43401 4.47309 4.57624 4.66091 4.71730 4.74305 4.80618 4.82944 4.90381 4.96239 4.99635 5.02336 5.11531 5.14222 5.22797 5.26685 5.31231 5.56870 5.64466 5.78284 5.81737 6.38149 6.90941 7.08469 7.26978 7.79619 8.14481 8.94809 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016738 B = 0.007400 C = 0.005912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.402177 B = 3782.765778 C = 4735.291547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.145 4.145 3 C -0.045 4.045 4 C -0.140 4.140 5 C -0.126 4.126 6 C 0.542 3.458 7 O -0.593 6.593 8 N -0.635 5.635 9 C 0.106 3.894 10 C -0.104 4.104 11 H 0.133 0.867 12 C -0.106 4.106 13 C 0.152 3.848 14 N -0.603 5.603 15 C -0.347 4.347 16 H 0.020 0.980 17 C -0.068 4.068 18 N -0.934 5.934 19 Si 1.106 2.894 20 H -0.278 1.278 21 H -0.286 1.286 22 H -0.284 1.284 23 C 0.146 3.854 24 C 0.114 3.886 25 H 0.108 0.892 26 H 0.110 0.890 27 H 0.111 0.889 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.034 0.966 32 H 0.051 0.949 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.124 0.876 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.042 0.958 39 H 0.045 0.955 40 H 0.015 0.985 41 H 0.256 0.744 42 H 0.008 0.992 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.393 2.372 -21.149 21.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.164 4.164 3 C -0.048 4.048 4 C -0.197 4.197 5 C -0.183 4.183 6 C 0.333 3.667 7 O -0.473 6.473 8 N -0.369 5.369 9 C -0.014 4.014 10 C -0.123 4.123 11 H 0.151 0.849 12 C -0.145 4.145 13 C 0.027 3.973 14 N -0.328 5.328 15 C -0.478 4.478 16 H 0.037 0.963 17 C -0.265 4.265 18 N -0.576 5.576 19 Si 0.931 3.069 20 H -0.204 1.204 21 H -0.212 1.212 22 H -0.211 1.211 23 C 0.020 3.980 24 C 0.009 3.991 25 H 0.126 0.874 26 H 0.128 0.872 27 H 0.130 0.870 28 H 0.118 0.882 29 H 0.096 0.904 30 H 0.115 0.885 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.142 0.858 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.033 0.967 41 H 0.066 0.934 42 H 0.026 0.974 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 1.009 1.956 -19.750 19.872 hybrid contribution 1.409 -1.076 -0.075 1.775 sum 2.419 0.880 -19.825 19.991 Atomic orbital electron populations 1.24138 0.95572 1.03163 0.99537 1.22571 0.96271 0.96688 1.00832 1.19865 0.95583 0.95944 0.93370 1.21996 0.98443 0.96647 1.02567 1.21789 0.98915 1.03031 0.94599 1.20698 0.79399 0.79408 0.87192 1.90672 1.67992 1.39543 1.49103 1.49543 1.42542 1.18672 1.26134 1.23679 1.02953 0.79633 0.95175 1.22802 0.99200 0.94575 0.95715 0.84892 1.21647 0.96368 1.00993 0.95502 1.20697 0.98393 0.83401 0.94854 1.43678 1.27868 1.04891 1.56345 1.19996 1.20854 0.95468 1.11432 0.96257 1.26963 1.07537 0.98654 0.93317 1.70898 1.17527 1.28343 1.40874 0.82972 0.72893 0.75057 0.75970 1.20362 1.21211 1.21086 1.20220 0.89503 0.95663 0.92627 1.22463 0.93949 0.94086 0.88590 0.87414 0.87198 0.87045 0.88239 0.90354 0.88512 0.94727 0.92940 0.89197 0.90111 0.85795 0.88427 0.89040 0.93906 0.93669 0.96737 0.93411 0.97394 0.95436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.75 13.70 67.78 0.93 -3.82 16 2 C -0.15 -4.16 8.00 25.65 0.21 -3.95 16 3 C -0.04 -1.20 0.77 -53.68 -0.04 -1.24 16 4 C -0.14 -3.26 7.01 71.98 0.50 -2.75 16 5 C -0.13 -2.29 8.34 71.98 0.60 -1.69 16 6 C 0.54 20.21 6.66 87.66 0.58 20.80 16 7 O -0.59 -29.39 15.28 -3.02 -0.05 -29.43 16 8 N -0.63 -20.11 3.22 -866.32 -2.79 -22.90 16 9 C 0.11 2.08 5.70 81.09 0.46 2.54 16 10 C -0.10 -2.67 4.57 -10.61 -0.05 -2.72 16 11 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 12 C -0.11 -3.57 5.68 30.51 0.17 -3.39 16 13 C 0.15 7.14 4.61 86.27 0.40 7.54 16 14 N -0.60 -32.55 2.87 -708.18 -2.03 -34.58 16 15 C -0.35 -21.70 9.41 84.03 0.79 -20.91 16 16 H 0.02 1.33 7.89 -2.91 -0.02 1.31 16 17 C -0.07 -4.14 4.65 84.86 0.39 -3.75 16 18 N -0.93 -58.70 12.35 21.65 0.27 -58.43 16 19 Si 1.11 55.48 29.98 68.60 2.06 57.54 16 20 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 21 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 22 H -0.28 -13.65 7.11 99.48 0.71 -12.95 16 23 C 0.15 6.93 6.16 85.90 0.53 7.46 16 24 C 0.11 3.79 4.03 38.67 0.16 3.95 16 25 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 26 H 0.11 2.45 8.06 -2.91 -0.02 2.42 16 27 H 0.11 2.59 5.69 -2.91 -0.02 2.57 16 28 H 0.10 3.00 8.06 -2.91 -0.02 2.97 16 29 H 0.08 1.59 5.24 -2.39 -0.01 1.58 16 30 H 0.10 1.65 7.50 -2.39 -0.02 1.63 16 31 H 0.03 1.03 7.50 -2.38 -0.02 1.01 16 32 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 1.15 6.40 -2.39 -0.02 1.14 16 35 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.10 1.60 5.65 -2.39 -0.01 1.58 16 37 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.04 1.60 7.68 -2.38 -0.02 1.58 16 39 H 0.04 2.46 6.11 -2.39 -0.01 2.44 16 40 H 0.01 0.68 7.95 -2.39 -0.02 0.66 16 41 H 0.26 16.24 6.76 -92.70 -0.63 15.61 16 42 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.03 1.51 6.45 -2.39 -0.02 1.50 16 Total: -1.00 -83.10 328.22 4.22 -78.88 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 1.13 Total: 10.87 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: 5.64 Total: -1.93 kcal Atomic # 7 Polarization: -111.37 SS G_CDS: -4.56 Total: -115.92 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -0.05 Total: -29.43 kcal Atomic # 14 Polarization: 55.48 SS G_CDS: 2.06 Total: 57.54 kcal Total: -83.10 4.22 -78.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084577669.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.258 kcal (2) G-P(sol) polarization free energy of solvation -83.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds