Wall clock time and date at job start Tue Mar 31 2020 00:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46941 * 2 1 4 4 C 1.50695 * 115.55211 * 293.46964 * 3 2 1 5 5 O 1.21283 * 120.00073 * 113.00165 * 4 3 2 6 6 N 1.34779 * 120.00033 * 293.00406 * 4 3 2 7 7 C 1.47282 * 136.54603 * 358.37791 * 6 4 3 8 8 C 1.54087 * 87.68314 * 151.36860 * 7 6 4 9 9 H 1.09000 * 115.04671 * 141.66451 * 8 7 6 10 10 C 1.51209 * 111.26032 * 272.99459 * 8 7 6 11 11 C 1.53148 * 109.00143 * 142.75357 * 10 8 7 12 12 N 1.46546 * 108.25065 * 301.70963 * 11 10 8 13 13 C 1.36929 * 119.73906 * 236.41473 * 12 11 10 14 14 H 1.08004 * 120.00127 * 154.56356 * 13 12 11 15 15 C 1.38815 * 120.00348 * 334.57232 * 13 12 11 16 16 N 1.31619 * 120.00518 * 147.74791 * 15 13 12 17 17 Si 1.86802 * 119.99607 * 327.74278 * 15 13 12 18 18 H 1.48500 * 109.47069 * 92.92690 * 17 15 13 19 19 H 1.48503 * 109.47023 * 212.92829 * 17 15 13 20 20 H 1.48497 * 109.47039 * 332.92716 * 17 15 13 21 21 C 1.45698 * 120.52044 * 56.40074 * 12 11 10 22 22 C 1.46471 * 136.54379 * 178.41008 * 6 4 3 23 23 H 1.08994 * 111.44145 * 96.34376 * 22 6 4 24 24 C 1.52996 * 117.49875 * 79.14446 * 3 2 1 25 25 C 1.53005 * 117.49590 * 147.80505 * 3 2 1 26 26 H 1.09005 * 109.46924 * 57.48650 * 1 2 3 27 27 H 1.08996 * 109.47003 * 177.48558 * 1 2 3 28 28 H 1.08994 * 109.46980 * 297.48992 * 1 2 3 29 29 H 1.08998 * 109.46802 * 240.00051 * 2 1 3 30 30 H 1.09003 * 109.46827 * 119.99906 * 2 1 3 31 31 H 1.08995 * 113.52921 * 266.08770 * 7 6 4 32 32 H 1.08996 * 113.53024 * 36.65399 * 7 6 4 33 33 H 1.09005 * 109.52037 * 22.95801 * 10 8 7 34 34 H 1.08999 * 109.76127 * 262.69405 * 10 8 7 35 35 H 1.09000 * 109.71022 * 182.02427 * 11 10 8 36 36 H 1.08993 * 109.70910 * 61.39881 * 11 10 8 37 37 H 0.96997 * 120.00173 * 179.97438 * 16 15 13 38 38 H 1.09000 * 108.78854 * 199.13077 * 21 12 11 39 39 H 1.09001 * 108.70191 * 80.85165 * 21 12 11 40 40 H 1.09001 * 117.50022 * 214.99866 * 24 3 2 41 41 H 1.08997 * 117.50016 * 0.02646 * 24 3 2 42 42 H 1.08997 * 117.49852 * 359.97219 * 25 3 2 43 43 H 1.09002 * 117.49728 * 144.96948 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7461 2.2358 -1.2471 5 8 0.9816 3.1762 -1.2015 6 7 2.3328 1.9002 -2.4131 7 6 3.3026 0.8904 -2.8704 8 6 2.6244 0.9557 -4.2524 9 1 3.3030 0.8909 -5.1029 10 6 1.4513 0.0050 -4.3329 11 6 0.3356 0.6583 -5.1538 12 7 -0.0325 1.9201 -4.5057 13 6 -1.3312 2.1371 -4.1300 14 1 -1.5532 2.8217 -3.3246 15 6 -2.3626 1.4773 -4.7840 16 7 -3.4546 1.1484 -4.1271 17 14 -2.2006 1.0563 -6.5968 18 1 -1.6493 -0.3153 -6.7390 19 1 -3.5368 1.1221 -7.2415 20 1 -1.2870 2.0273 -7.2507 21 6 0.9727 2.9453 -4.2578 22 6 2.2945 2.3753 -3.7981 23 1 3.1146 3.0622 -4.0066 24 6 2.0345 2.1937 1.3328 25 6 3.3583 1.7257 0.7231 26 1 -0.3633 0.5524 -0.8666 27 1 -0.3633 -1.0266 -0.0451 28 1 -0.3633 0.4743 0.9116 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 4.3327 1.2467 -2.8739 32 1 3.1915 -0.0747 -2.3763 33 1 1.0865 -0.2092 -3.3283 34 1 1.7612 -0.9230 -4.8133 35 1 -0.5302 -0.0030 -5.1890 36 1 0.6903 0.8545 -6.1655 37 1 -4.1755 0.6877 -4.5842 38 1 0.5988 3.6258 -3.4928 39 1 1.1336 3.5068 -5.1781 40 1 1.8183 3.2618 1.3077 41 1 1.6680 1.6602 2.2098 42 1 3.8620 0.8845 1.1992 43 1 4.0132 2.4855 0.2966 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084637065.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:26 Heat of formation + Delta-G solvation = 57.738721 kcal Electronic energy + Delta-G solvation = -23657.288144 eV Core-core repulsion = 20512.580725 eV Total energy + Delta-G solvation = -3144.707419 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.85569 -38.82768 -36.32909 -35.48052 -31.92353 -31.70853 -31.14888 -29.24868 -27.16862 -24.66511 -23.62349 -23.26748 -22.51507 -21.85198 -21.08003 -19.25973 -17.55697 -16.89880 -16.21132 -15.82421 -15.51652 -15.08388 -14.91557 -14.19162 -13.69189 -13.62768 -13.51554 -13.13199 -12.95592 -12.75964 -12.44006 -12.20935 -12.12417 -11.80407 -11.57970 -11.42469 -11.31097 -11.03704 -10.90868 -10.83366 -10.58897 -10.31051 -10.28728 -9.92717 -9.87544 -9.62008 -9.43206 -9.05131 -8.48790 -8.21464 -6.90936 -5.90558 -3.12816 3.02085 3.11559 3.38537 3.55252 3.60779 3.77215 4.49694 4.55257 4.62924 4.69960 4.85412 4.96064 5.00659 5.15721 5.29944 5.43901 5.45985 5.53369 5.54259 5.59014 5.60916 5.66393 5.77172 5.85990 5.88292 5.92497 6.04378 6.07943 6.14525 6.22916 6.27019 6.34876 6.37193 6.43778 6.66041 6.75509 6.78621 6.85031 7.01658 8.08329 8.19218 8.44972 8.66404 9.09017 9.84647 10.18559 11.24864 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020851 B = 0.006934 C = 0.006171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.566283 B = 4037.212351 C = 4536.590254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.075 4.075 3 C -0.144 4.144 4 C 0.584 3.416 5 O -0.524 6.524 6 N -0.627 5.627 7 C 0.098 3.902 8 C -0.111 4.111 9 H 0.092 0.908 10 C -0.118 4.118 11 C 0.135 3.865 12 N -0.592 5.592 13 C -0.256 4.256 14 H 0.083 0.917 15 C 0.030 3.970 16 N -0.891 5.891 17 Si 0.856 3.144 18 H -0.289 1.289 19 H -0.302 1.302 20 H -0.274 1.274 21 C 0.142 3.858 22 C 0.126 3.874 23 H 0.079 0.921 24 C -0.145 4.145 25 C -0.165 4.165 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.021 0.979 37 H 0.260 0.740 38 H 0.077 0.923 39 H 0.022 0.978 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.064 -3.788 5.838 18.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.112 4.112 3 C -0.147 4.147 4 C 0.373 3.627 5 O -0.399 6.399 6 N -0.363 5.363 7 C -0.026 4.026 8 C -0.130 4.130 9 H 0.111 0.889 10 C -0.157 4.157 11 C 0.009 3.991 12 N -0.315 5.315 13 C -0.384 4.384 14 H 0.101 0.899 15 C -0.170 4.170 16 N -0.533 5.533 17 Si 0.685 3.315 18 H -0.216 1.216 19 H -0.229 1.229 20 H -0.199 1.199 21 C 0.016 3.984 22 C 0.022 3.978 23 H 0.097 0.903 24 C -0.182 4.182 25 C -0.202 4.202 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.039 0.961 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.040 0.960 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 16.349 -3.234 6.107 17.749 hybrid contribution 0.093 -0.283 -1.112 1.151 sum 16.442 -3.517 4.996 17.540 Atomic orbital electron populations 1.21723 0.94160 1.01801 1.03224 1.21005 0.97137 0.91260 1.01836 1.21452 1.03013 0.97700 0.92517 1.18770 0.79510 0.83150 0.81298 1.90718 1.35278 1.29514 1.84380 1.49285 1.43515 1.36027 1.07446 1.23320 0.92923 0.92751 0.93586 1.22455 0.98141 0.96181 0.96266 0.88941 1.21522 0.95386 0.96429 1.02358 1.21121 0.96281 0.88442 0.93281 1.43788 1.05272 1.12381 1.70044 1.18884 0.80333 1.26366 1.12787 0.89913 1.25154 0.95462 0.98604 0.97750 1.70042 1.08533 1.39672 1.35066 0.87262 0.76215 0.77842 0.90182 1.21627 1.22949 1.19916 1.20293 0.87792 0.91755 0.98594 1.22357 0.99634 0.96129 0.79678 0.90312 1.22958 0.99352 1.01235 0.94698 1.23057 0.90377 1.03459 1.03294 0.91076 0.92695 0.92855 0.91449 0.91662 0.90474 0.90693 0.91283 0.92268 0.90618 0.96072 0.92984 0.90479 0.96015 0.88037 0.88113 0.88228 0.88877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.82 37.16 0.37 -2.09 16 2 C -0.07 -1.00 5.80 -26.73 -0.16 -1.16 16 3 C -0.14 -2.07 1.74 -155.66 -0.27 -2.34 16 4 C 0.58 10.81 6.65 -10.99 -0.07 10.74 16 5 O -0.52 -12.13 16.03 5.55 0.09 -12.05 16 6 N -0.63 -10.32 3.35 -187.43 -0.63 -10.95 16 7 C 0.10 1.19 7.72 -11.55 -0.09 1.10 16 8 C -0.11 -1.56 4.45 -91.13 -0.41 -1.97 16 9 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 10 C -0.12 -2.00 5.65 -27.56 -0.16 -2.15 16 11 C 0.13 2.93 4.30 -3.94 -0.02 2.91 16 12 N -0.59 -14.52 2.78 -174.89 -0.49 -15.00 16 13 C -0.26 -7.47 9.86 -15.06 -0.15 -7.62 16 14 H 0.08 2.70 7.98 -52.48 -0.42 2.28 16 15 C 0.03 0.87 4.94 -17.43 -0.09 0.79 16 16 N -0.89 -27.85 13.97 55.49 0.78 -27.07 16 17 Si 0.86 22.29 25.04 -169.99 -4.26 18.03 16 18 H -0.29 -7.17 6.63 56.52 0.37 -6.80 16 19 H -0.30 -8.00 7.11 56.52 0.40 -7.60 16 20 H -0.27 -7.11 7.11 56.52 0.40 -6.71 16 21 C 0.14 3.04 6.17 -5.43 -0.03 3.00 16 22 C 0.13 2.09 4.08 -77.58 -0.32 1.77 16 23 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 24 C -0.15 -1.85 9.78 -26.69 -0.26 -2.11 16 25 C -0.16 -1.82 9.92 -26.69 -0.26 -2.08 16 26 H 0.07 1.49 7.68 -51.93 -0.40 1.09 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.89 6.69 -51.93 -0.35 0.55 16 30 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.85 6.60 -51.93 -0.34 0.50 16 33 H 0.07 1.30 7.64 -51.93 -0.40 0.90 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 1.84 4.73 -51.93 -0.25 1.59 16 36 H 0.02 0.45 7.70 -51.93 -0.40 0.05 16 37 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 38 H 0.08 1.87 6.47 -51.93 -0.34 1.53 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.10 1.43 8.02 -51.93 -0.42 1.01 16 41 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 334.23 15.07 5.04 5.04 Total: -1.00 -34.07 334.23 -8.49 -42.56 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -7.11 Total: 0.66 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -1.91 Total: -1.21 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: -0.34 Total: -53.03 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.26 Total: 18.03 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.07 -8.49 -42.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084637065.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.296 kcal (2) G-P(sol) polarization free energy of solvation -34.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds