Wall clock time and date at job start Tue Mar 31 2020 00:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46941 * 2 1 4 4 C 1.50695 * 115.55211 * 293.46964 * 3 2 1 5 5 O 1.21283 * 120.00073 * 113.00165 * 4 3 2 6 6 N 1.34779 * 120.00033 * 293.00406 * 4 3 2 7 7 C 1.47282 * 136.54603 * 358.37791 * 6 4 3 8 8 C 1.54087 * 87.68314 * 151.36860 * 7 6 4 9 9 H 1.09000 * 115.04671 * 141.66451 * 8 7 6 10 10 C 1.51209 * 111.26032 * 272.99459 * 8 7 6 11 11 C 1.53148 * 109.00143 * 142.75357 * 10 8 7 12 12 N 1.46546 * 108.25065 * 301.70963 * 11 10 8 13 13 C 1.36929 * 119.73906 * 236.41473 * 12 11 10 14 14 H 1.08004 * 120.00127 * 154.56356 * 13 12 11 15 15 C 1.38815 * 120.00348 * 334.57232 * 13 12 11 16 16 N 1.31619 * 120.00518 * 147.74791 * 15 13 12 17 17 Si 1.86802 * 119.99607 * 327.74278 * 15 13 12 18 18 H 1.48500 * 109.47069 * 92.92690 * 17 15 13 19 19 H 1.48503 * 109.47023 * 212.92829 * 17 15 13 20 20 H 1.48497 * 109.47039 * 332.92716 * 17 15 13 21 21 C 1.45698 * 120.52044 * 56.40074 * 12 11 10 22 22 C 1.46471 * 136.54379 * 178.41008 * 6 4 3 23 23 H 1.08994 * 111.44145 * 96.34376 * 22 6 4 24 24 C 1.52996 * 117.49875 * 79.14446 * 3 2 1 25 25 C 1.53005 * 117.49590 * 147.80505 * 3 2 1 26 26 H 1.09005 * 109.46924 * 57.48650 * 1 2 3 27 27 H 1.08996 * 109.47003 * 177.48558 * 1 2 3 28 28 H 1.08994 * 109.46980 * 297.48992 * 1 2 3 29 29 H 1.08998 * 109.46802 * 240.00051 * 2 1 3 30 30 H 1.09003 * 109.46827 * 119.99906 * 2 1 3 31 31 H 1.08995 * 113.52921 * 266.08770 * 7 6 4 32 32 H 1.08996 * 113.53024 * 36.65399 * 7 6 4 33 33 H 1.09005 * 109.52037 * 22.95801 * 10 8 7 34 34 H 1.08999 * 109.76127 * 262.69405 * 10 8 7 35 35 H 1.09000 * 109.71022 * 182.02427 * 11 10 8 36 36 H 1.08993 * 109.70910 * 61.39881 * 11 10 8 37 37 H 0.96997 * 120.00173 * 179.97438 * 16 15 13 38 38 H 1.09000 * 108.78854 * 199.13077 * 21 12 11 39 39 H 1.09001 * 108.70191 * 80.85165 * 21 12 11 40 40 H 1.09001 * 117.50022 * 214.99866 * 24 3 2 41 41 H 1.08997 * 117.50016 * 0.02646 * 24 3 2 42 42 H 1.08997 * 117.49852 * 359.97219 * 25 3 2 43 43 H 1.09002 * 117.49728 * 144.96948 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7461 2.2358 -1.2471 5 8 0.9816 3.1762 -1.2015 6 7 2.3328 1.9002 -2.4131 7 6 3.3026 0.8904 -2.8704 8 6 2.6244 0.9557 -4.2524 9 1 3.3030 0.8909 -5.1029 10 6 1.4513 0.0050 -4.3329 11 6 0.3356 0.6583 -5.1538 12 7 -0.0325 1.9201 -4.5057 13 6 -1.3312 2.1371 -4.1300 14 1 -1.5532 2.8217 -3.3246 15 6 -2.3626 1.4773 -4.7840 16 7 -3.4546 1.1484 -4.1271 17 14 -2.2006 1.0563 -6.5968 18 1 -1.6493 -0.3153 -6.7390 19 1 -3.5368 1.1221 -7.2415 20 1 -1.2870 2.0273 -7.2507 21 6 0.9727 2.9453 -4.2578 22 6 2.2945 2.3753 -3.7981 23 1 3.1146 3.0622 -4.0066 24 6 2.0345 2.1937 1.3328 25 6 3.3583 1.7257 0.7231 26 1 -0.3633 0.5524 -0.8666 27 1 -0.3633 -1.0266 -0.0451 28 1 -0.3633 0.4743 0.9116 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 4.3327 1.2467 -2.8739 32 1 3.1915 -0.0747 -2.3763 33 1 1.0865 -0.2092 -3.3283 34 1 1.7612 -0.9230 -4.8133 35 1 -0.5302 -0.0030 -5.1890 36 1 0.6903 0.8545 -6.1655 37 1 -4.1755 0.6877 -4.5842 38 1 0.5988 3.6258 -3.4928 39 1 1.1336 3.5068 -5.1781 40 1 1.8183 3.2618 1.3077 41 1 1.6680 1.6602 2.2098 42 1 3.8620 0.8845 1.1992 43 1 4.0132 2.4855 0.2966 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084637065.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:25 Heat of formation + Delta-G solvation = 33.636104 kcal Electronic energy + Delta-G solvation = -23658.333312 eV Core-core repulsion = 20512.580725 eV Total energy + Delta-G solvation = -3145.752587 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.12767 -40.07334 -37.65162 -37.26457 -33.96487 -32.87368 -32.78435 -30.75958 -28.78093 -25.96935 -25.42969 -24.66477 -23.53516 -23.03730 -22.65514 -20.54655 -19.19813 -18.50119 -17.57023 -17.17887 -17.13996 -16.86891 -16.02862 -15.65490 -15.51735 -15.10142 -14.84395 -14.48986 -14.37508 -14.30514 -14.10385 -13.83853 -13.49680 -13.31155 -12.92906 -12.65843 -12.60860 -12.59145 -12.42079 -12.31775 -12.17678 -12.01153 -11.65624 -11.44976 -11.36055 -11.13681 -10.91112 -10.62335 -10.44295 -9.56308 -8.94127 -8.22117 -5.41571 1.27747 1.39669 1.51070 1.71792 1.93248 2.40330 2.74497 2.93292 3.31470 3.42577 3.48223 3.66399 3.84137 3.90131 4.04118 4.13587 4.29915 4.32927 4.37444 4.47096 4.48256 4.58404 4.61267 4.65452 4.70625 4.74373 4.85643 4.92212 4.94005 4.94414 4.99761 5.03619 5.08586 5.15739 5.20160 5.23636 5.25118 5.38305 5.59097 5.87037 6.09005 6.92853 6.96578 7.32205 7.67652 7.99787 8.98405 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020851 B = 0.006934 C = 0.006171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.566283 B = 4037.212351 C = 4536.590254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.064 4.064 3 C -0.167 4.167 4 C 0.568 3.432 5 O -0.597 6.597 6 N -0.636 5.636 7 C 0.111 3.889 8 C -0.101 4.101 9 H 0.141 0.859 10 C -0.110 4.110 11 C 0.125 3.875 12 N -0.604 5.604 13 C -0.254 4.254 14 H 0.017 0.983 15 C -0.027 4.027 16 N -0.945 5.945 17 Si 0.941 3.059 18 H -0.262 1.262 19 H -0.307 1.307 20 H -0.267 1.267 21 C 0.141 3.859 22 C 0.113 3.887 23 H 0.116 0.884 24 C -0.159 4.159 25 C -0.121 4.121 26 H 0.004 0.996 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.123 0.877 32 H 0.090 0.910 33 H 0.040 0.960 34 H 0.100 0.900 35 H 0.045 0.955 36 H 0.043 0.957 37 H 0.262 0.738 38 H 0.028 0.972 39 H 0.032 0.968 40 H 0.074 0.926 41 H 0.121 0.879 42 H 0.139 0.861 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.054 -6.596 4.725 23.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.101 4.101 3 C -0.170 4.170 4 C 0.359 3.641 5 O -0.478 6.478 6 N -0.370 5.370 7 C -0.010 4.010 8 C -0.120 4.120 9 H 0.159 0.841 10 C -0.149 4.149 11 C 0.001 3.999 12 N -0.328 5.328 13 C -0.384 4.384 14 H 0.035 0.965 15 C -0.223 4.223 16 N -0.590 5.590 17 Si 0.767 3.233 18 H -0.188 1.188 19 H -0.235 1.235 20 H -0.192 1.192 21 C 0.015 3.985 22 C 0.009 3.991 23 H 0.134 0.866 24 C -0.196 4.196 25 C -0.157 4.157 26 H 0.024 0.976 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.125 0.875 31 H 0.140 0.860 32 H 0.108 0.892 33 H 0.058 0.942 34 H 0.118 0.882 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.046 0.954 39 H 0.049 0.951 40 H 0.093 0.907 41 H 0.139 0.861 42 H 0.157 0.843 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 21.430 -6.087 4.959 22.823 hybrid contribution -1.528 0.675 -0.701 1.811 sum 19.902 -5.412 4.258 21.060 Atomic orbital electron populations 1.21656 0.97348 1.01262 1.00113 1.20982 0.94060 0.91053 1.03992 1.21424 1.06834 0.97651 0.91096 1.19648 0.78585 0.82702 0.83133 1.90679 1.38423 1.32911 1.85742 1.49530 1.43911 1.36830 1.06759 1.23565 0.93676 0.92485 0.91321 1.22467 0.97630 0.92552 0.99361 0.84119 1.21423 0.94805 0.98573 1.00082 1.21267 0.97073 0.86640 0.94930 1.43817 1.03929 1.14527 1.70530 1.18576 0.83480 1.25185 1.11117 0.96483 1.25799 0.95026 0.99243 1.02230 1.70173 1.09954 1.41896 1.36961 0.85930 0.75955 0.78937 0.82461 1.18762 1.23499 1.19165 1.20329 0.89589 0.90960 0.97600 1.22605 0.97276 0.98802 0.80448 0.86637 1.23031 1.01811 0.99980 0.94766 1.23190 0.88651 1.03923 0.99981 0.97634 0.91483 0.92817 0.90919 0.87522 0.85970 0.89154 0.94152 0.88175 0.93690 0.93920 0.92893 0.95392 0.95071 0.90712 0.86063 0.84333 0.88593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.97 9.82 71.98 0.71 -4.26 16 2 C -0.06 -1.58 5.80 30.60 0.18 -1.41 16 3 C -0.17 -4.64 1.74 -52.93 -0.09 -4.74 16 4 C 0.57 21.84 6.65 87.66 0.58 22.43 16 5 O -0.60 -30.59 16.03 -3.04 -0.05 -30.63 16 6 N -0.64 -20.20 3.35 -865.28 -2.90 -23.10 16 7 C 0.11 2.11 7.72 81.09 0.63 2.74 16 8 C -0.10 -2.35 4.45 -11.12 -0.05 -2.40 16 9 H 0.14 2.10 8.14 -2.39 -0.02 2.08 16 10 C -0.11 -3.39 5.65 30.06 0.17 -3.22 16 11 C 0.13 5.29 4.30 86.42 0.37 5.66 16 12 N -0.60 -30.79 2.78 -707.23 -1.97 -32.75 16 13 C -0.25 -16.09 9.86 84.04 0.83 -15.26 16 14 H 0.02 1.28 7.98 -2.91 -0.02 1.25 16 15 C -0.03 -1.71 4.94 84.86 0.42 -1.29 16 16 N -0.95 -62.96 13.97 21.65 0.30 -62.65 16 17 Si 0.94 47.73 25.04 68.60 1.72 49.45 16 18 H -0.26 -12.09 6.63 99.48 0.66 -11.43 16 19 H -0.31 -15.73 7.11 99.48 0.71 -15.02 16 20 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 21 C 0.14 6.26 6.17 85.91 0.53 6.79 16 22 C 0.11 3.52 4.08 38.76 0.16 3.68 16 23 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 24 C -0.16 -3.94 9.78 30.62 0.30 -3.64 16 25 C -0.12 -2.21 9.92 30.62 0.30 -1.90 16 26 H 0.00 0.21 7.68 -2.38 -0.02 0.19 16 27 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.07 1.72 6.69 -2.39 -0.02 1.71 16 30 H 0.11 1.83 8.08 -2.39 -0.02 1.81 16 31 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.09 1.52 6.60 -2.39 -0.02 1.50 16 33 H 0.04 1.47 7.64 -2.38 -0.02 1.45 16 34 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.04 2.16 4.73 -2.39 -0.01 2.14 16 36 H 0.04 1.64 7.70 -2.39 -0.02 1.62 16 37 H 0.26 16.35 8.31 -92.71 -0.77 15.58 16 38 H 0.03 1.49 6.47 -2.39 -0.02 1.47 16 39 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.07 2.25 8.02 -2.39 -0.02 2.23 16 41 H 0.12 2.44 8.14 -2.39 -0.02 2.43 16 42 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -88.26 334.23 3.08 -85.18 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.93 Total: 11.32 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: 5.03 Total: 3.18 kcal Atomic # 7 Polarization: -113.94 SS G_CDS: -4.56 Total: -118.50 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -0.05 Total: -30.63 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 1.72 Total: 49.45 kcal Total: -88.26 3.08 -85.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084637065.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.821 kcal (2) G-P(sol) polarization free energy of solvation -88.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds