Wall clock time and date at job start Tue Mar 31 2020 01:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32993 * 120.00045 * 2 1 4 4 C 1.50701 * 120.00195 * 180.02562 * 3 2 1 5 5 C 1.47097 * 119.99928 * 0.02562 * 3 2 1 6 6 O 1.21609 * 120.00012 * 253.94262 * 5 3 2 7 7 N 1.34775 * 120.00007 * 73.95052 * 5 3 2 8 8 C 1.47767 * 125.82078 * 184.26363 * 7 5 3 9 9 C 1.56240 * 103.98475 * 154.00149 * 8 7 5 10 10 H 1.08995 * 113.16419 * 160.96274 * 9 8 7 11 11 C 1.52893 * 107.47431 * 286.27201 * 9 8 7 12 12 C 1.51604 * 111.55042 * 168.72271 * 11 9 8 13 13 N 1.44328 * 113.11169 * 320.91895 * 12 11 9 14 14 C 1.36934 * 116.35300 * 187.26477 * 13 12 11 15 15 H 1.07999 * 120.00020 * 141.90058 * 14 13 12 16 16 C 1.38815 * 120.00232 * 321.89929 * 14 13 12 17 17 N 1.31619 * 119.99895 * 348.13686 * 16 14 13 18 18 Si 1.86794 * 120.00042 * 168.13256 * 16 14 13 19 19 H 1.48502 * 109.47346 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47068 * 120.00458 * 18 16 14 21 21 H 1.48498 * 109.47275 * 240.00346 * 18 16 14 22 22 C 1.42316 * 126.90172 * 6.19599 * 13 12 11 23 23 C 1.49956 * 117.15184 * 4.49809 * 22 13 12 24 24 H 1.08993 * 108.82535 * 139.52266 * 23 22 13 25 25 C 1.47620 * 125.82220 * 4.56109 * 7 5 3 26 26 H 1.09003 * 109.47201 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47095 * 300.00021 * 1 2 3 28 28 H 1.08998 * 109.47056 * 59.99813 * 1 2 3 29 29 H 1.07999 * 120.00219 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47384 * 84.93412 * 4 3 2 31 31 H 1.09010 * 109.46757 * 324.93444 * 4 3 2 32 32 H 1.08998 * 109.47128 * 204.94283 * 4 3 2 33 33 H 1.09005 * 110.49594 * 272.75549 * 8 7 5 34 34 H 1.09003 * 110.49599 * 35.43595 * 8 7 5 35 35 H 1.09006 * 109.06408 * 289.25669 * 11 9 8 36 36 H 1.09002 * 109.06259 * 48.25342 * 11 9 8 37 37 H 1.08996 * 108.75524 * 81.86084 * 12 11 9 38 38 H 1.09003 * 108.75437 * 200.10861 * 12 11 9 39 39 H 0.97000 * 119.99975 * 179.97438 * 17 16 14 40 40 H 1.08994 * 108.74346 * 241.55161 * 22 13 12 41 41 H 1.08998 * 106.44573 * 125.59432 * 22 13 12 42 42 H 1.09002 * 110.07997 * 299.86228 * 25 7 5 43 43 H 1.08996 * 110.08153 * 61.36360 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 3.6789 1.1518 -0.0006 5 6 1.4364 2.4256 0.0006 6 8 1.3843 3.0981 -1.0113 7 7 0.8205 2.8476 1.1226 8 6 -0.0235 4.0545 1.2442 9 6 -0.9816 3.7269 2.4340 10 1 -1.4421 4.6133 2.8703 11 6 -2.0073 2.7106 1.9312 12 6 -2.8116 2.1199 3.0725 13 7 -2.0193 1.8656 4.2517 14 6 -2.6415 1.1915 5.2683 15 1 -2.0955 0.4588 5.8441 16 6 -3.9741 1.4498 5.5589 17 7 -4.5736 2.4933 5.0260 18 14 -4.9166 0.3163 6.7062 19 1 -4.0220 -0.7751 7.1688 20 1 -5.4006 1.0893 7.8782 21 1 -6.0762 -0.2661 5.9843 22 6 -0.6573 2.2224 4.4595 23 6 0.0101 3.0292 3.3861 24 1 0.6373 3.7875 3.8548 25 6 0.8789 2.1864 2.4411 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 2.0470 -0.9353 0.0004 30 1 4.0419 1.0613 -1.0243 31 1 4.0425 0.3104 0.5896 32 1 4.0424 2.0835 0.4329 33 1 0.5887 4.9269 1.4726 34 1 -0.5931 4.2157 0.3289 35 1 -2.6859 3.2042 1.2354 36 1 -1.4864 1.9070 1.4105 37 1 -3.6131 2.8116 3.3312 38 1 -3.2537 1.1806 2.7402 39 1 -5.5048 2.6736 5.2288 40 1 -0.0763 1.3128 4.6116 41 1 -0.6267 2.7971 5.3851 42 1 0.4810 1.1741 2.3701 43 1 1.9073 2.1596 2.8011 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087927134.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:32 Heat of formation + Delta-G solvation = 3.926051 kcal Electronic energy + Delta-G solvation = -23118.154714 eV Core-core repulsion = 19971.113802 eV Total energy + Delta-G solvation = -3147.040912 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.46992 -38.45506 -35.63222 -35.32027 -32.44995 -31.49754 -30.30193 -30.25808 -27.94436 -25.77971 -24.81924 -23.81203 -22.27204 -21.74647 -20.90408 -18.19331 -17.85738 -17.09048 -16.30804 -15.95400 -15.15060 -14.97469 -14.75321 -14.06247 -13.98695 -13.68442 -13.57098 -13.22214 -13.10546 -12.80571 -12.71966 -12.48208 -12.32360 -12.11530 -11.75460 -11.68313 -11.56675 -11.23283 -11.03691 -10.82902 -10.56989 -10.24810 -10.19886 -9.85019 -9.70948 -9.58783 -9.52562 -8.96141 -8.59129 -8.45728 -6.50889 -5.58904 -3.44555 1.71158 2.74463 3.17992 3.33856 3.41923 3.44057 4.43514 4.50457 4.78954 4.79445 4.96334 5.12335 5.20484 5.33289 5.35442 5.41409 5.45913 5.53407 5.60795 5.63106 5.68099 5.78184 5.82953 5.86076 5.90707 5.99980 6.10760 6.16066 6.28756 6.35864 6.45229 6.53950 6.58916 6.64501 6.72865 6.82695 6.90621 7.30540 7.63780 7.76699 7.99466 8.24018 8.59755 9.30989 9.98755 10.29669 11.21555 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027279 B = 0.004918 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.177920 B = 5692.546494 C = 5992.961971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C -0.172 4.172 4 C -0.099 4.099 5 C 0.574 3.426 6 O -0.548 6.548 7 N -0.609 5.609 8 C 0.105 3.895 9 C -0.081 4.081 10 H 0.100 0.900 11 C -0.121 4.121 12 C 0.150 3.850 13 N -0.582 5.582 14 C -0.270 4.270 15 H 0.061 0.939 16 C 0.014 3.986 17 N -0.892 5.892 18 Si 0.903 3.097 19 H -0.276 1.276 20 H -0.289 1.289 21 H -0.288 1.288 22 C 0.180 3.820 23 C -0.099 4.099 24 H 0.073 0.927 25 C 0.109 3.891 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.067 0.933 29 H 0.123 0.877 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.055 0.945 36 H 0.048 0.952 37 H 0.087 0.913 38 H 0.013 0.987 39 H 0.253 0.747 40 H 0.008 0.992 41 H 0.021 0.979 42 H 0.076 0.924 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.783 -1.544 -6.999 13.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.128 4.128 3 C -0.175 4.175 4 C -0.156 4.156 5 C 0.363 3.637 6 O -0.427 6.427 7 N -0.342 5.342 8 C -0.017 4.017 9 C -0.100 4.100 10 H 0.118 0.882 11 C -0.159 4.159 12 C 0.025 3.975 13 N -0.306 5.306 14 C -0.400 4.400 15 H 0.079 0.921 16 C -0.186 4.186 17 N -0.535 5.535 18 Si 0.732 3.268 19 H -0.201 1.201 20 H -0.216 1.216 21 H -0.215 1.215 22 C 0.053 3.947 23 C -0.118 4.118 24 H 0.092 0.908 25 C -0.013 4.013 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.141 0.859 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.067 0.933 37 H 0.104 0.896 38 H 0.031 0.969 39 H 0.064 0.936 40 H 0.025 0.975 41 H 0.039 0.961 42 H 0.094 0.906 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.670 -1.111 -7.635 13.990 hybrid contribution -0.520 -0.655 0.621 1.042 sum 11.150 -1.766 -7.014 13.291 Atomic orbital electron populations 1.21170 0.92438 1.03246 1.03273 1.23340 0.96534 0.96688 0.96227 1.21416 0.96818 0.92857 1.06363 1.20599 0.89899 1.02640 1.02469 1.18106 0.78241 0.85403 0.81962 1.90780 1.62251 1.57129 1.32496 1.48728 1.49095 1.26878 1.09495 1.22742 0.92289 0.86979 0.99713 1.22273 0.94895 0.99199 0.93658 0.88152 1.21624 0.97423 0.97471 0.99405 1.20345 0.94288 0.99043 0.83801 1.42092 1.06938 1.67016 1.14584 1.19117 0.94534 1.15322 1.11016 0.92147 1.25305 0.98663 0.96343 0.98296 1.69824 1.11600 1.26509 1.45613 0.86222 0.79804 0.80269 0.80463 1.20138 1.21552 1.21507 1.19001 0.86635 0.95051 0.94026 1.21518 0.96499 0.97887 0.95918 0.90843 1.22246 0.99739 0.97571 0.81790 0.91305 0.89840 0.91381 0.85877 0.91023 0.91074 0.91920 0.91715 0.90548 0.92629 0.93296 0.89604 0.96875 0.93650 0.97493 0.96074 0.90614 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.12 36.00 0.33 -1.53 16 2 C -0.11 -1.27 9.69 -36.13 -0.35 -1.62 16 3 C -0.17 -2.21 4.97 -102.85 -0.51 -2.72 16 4 C -0.10 -1.00 10.02 36.01 0.36 -0.63 16 5 C 0.57 9.13 6.11 -12.67 -0.08 9.05 16 6 O -0.55 -10.58 17.40 5.27 0.09 -10.49 16 7 N -0.61 -9.13 2.55 -170.77 -0.44 -9.57 16 8 C 0.10 1.56 6.26 -1.61 -0.01 1.55 16 9 C -0.08 -1.32 3.72 -88.33 -0.33 -1.65 16 10 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 11 C -0.12 -2.22 5.02 -27.49 -0.14 -2.36 16 12 C 0.15 3.46 5.34 -5.91 -0.03 3.43 16 13 N -0.58 -13.95 3.13 -180.86 -0.57 -14.52 16 14 C -0.27 -7.19 9.19 -15.06 -0.14 -7.33 16 15 H 0.06 1.60 7.86 -52.49 -0.41 1.19 16 16 C 0.01 0.38 5.16 -17.43 -0.09 0.29 16 17 N -0.89 -24.99 10.79 55.49 0.60 -24.39 16 18 Si 0.90 21.15 29.57 -169.99 -5.03 16.12 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 C 0.18 3.60 5.58 -7.75 -0.04 3.55 16 23 C -0.10 -1.58 2.71 -91.23 -0.25 -1.83 16 24 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 25 C 0.11 1.56 4.86 -3.14 -0.02 1.54 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.08 1.23 3.50 -51.93 -0.18 1.04 16 28 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16 29 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.57 8.11 -51.92 -0.42 0.15 16 32 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 1.18 7.99 -51.93 -0.41 0.77 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.05 0.87 4.87 -51.93 -0.25 0.62 16 37 H 0.09 2.26 5.61 -51.93 -0.29 1.97 16 38 H 0.01 0.33 8.12 -51.93 -0.42 -0.10 16 39 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 40 H 0.01 0.15 7.77 -51.93 -0.40 -0.26 16 41 H 0.02 0.46 8.10 -51.93 -0.42 0.04 16 42 H 0.08 1.15 5.68 -51.93 -0.30 0.86 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 329.67 15.07 4.97 4.97 Total: -1.00 -30.23 329.67 -8.53 -38.77 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -6.87 Total: -0.63 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -1.29 Total: -0.26 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: -0.40 Total: -48.48 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.23 -8.53 -38.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087927134.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.693 kcal (2) G-P(sol) polarization free energy of solvation -30.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds