Wall clock time and date at job start Tue Mar 31 2020 01:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.32993 * 120.00045 * 2 1 4 4 C 1.50701 * 120.00195 * 180.02562 * 3 2 1 5 5 C 1.47097 * 119.99928 * 0.02562 * 3 2 1 6 6 O 1.21609 * 120.00012 * 253.94262 * 5 3 2 7 7 N 1.34775 * 120.00007 * 73.95052 * 5 3 2 8 8 C 1.47767 * 125.82078 * 184.26363 * 7 5 3 9 9 C 1.56240 * 103.98475 * 154.00149 * 8 7 5 10 10 H 1.08995 * 113.16419 * 160.96274 * 9 8 7 11 11 C 1.52893 * 107.47431 * 286.27201 * 9 8 7 12 12 C 1.51604 * 111.55042 * 168.72271 * 11 9 8 13 13 N 1.44328 * 113.11169 * 320.91895 * 12 11 9 14 14 C 1.36934 * 116.35300 * 187.26477 * 13 12 11 15 15 H 1.07999 * 120.00020 * 141.90058 * 14 13 12 16 16 C 1.38815 * 120.00232 * 321.89929 * 14 13 12 17 17 N 1.31619 * 119.99895 * 348.13686 * 16 14 13 18 18 Si 1.86794 * 120.00042 * 168.13256 * 16 14 13 19 19 H 1.48502 * 109.47346 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47068 * 120.00458 * 18 16 14 21 21 H 1.48498 * 109.47275 * 240.00346 * 18 16 14 22 22 C 1.42316 * 126.90172 * 6.19599 * 13 12 11 23 23 C 1.49956 * 117.15184 * 4.49809 * 22 13 12 24 24 H 1.08993 * 108.82535 * 139.52266 * 23 22 13 25 25 C 1.47620 * 125.82220 * 4.56109 * 7 5 3 26 26 H 1.09003 * 109.47201 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47095 * 300.00021 * 1 2 3 28 28 H 1.08998 * 109.47056 * 59.99813 * 1 2 3 29 29 H 1.07999 * 120.00219 * 179.97438 * 2 1 3 30 30 H 1.08994 * 109.47384 * 84.93412 * 4 3 2 31 31 H 1.09010 * 109.46757 * 324.93444 * 4 3 2 32 32 H 1.08998 * 109.47128 * 204.94283 * 4 3 2 33 33 H 1.09005 * 110.49594 * 272.75549 * 8 7 5 34 34 H 1.09003 * 110.49599 * 35.43595 * 8 7 5 35 35 H 1.09006 * 109.06408 * 289.25669 * 11 9 8 36 36 H 1.09002 * 109.06259 * 48.25342 * 11 9 8 37 37 H 1.08996 * 108.75524 * 81.86084 * 12 11 9 38 38 H 1.09003 * 108.75437 * 200.10861 * 12 11 9 39 39 H 0.97000 * 119.99975 * 179.97438 * 17 16 14 40 40 H 1.08994 * 108.74346 * 241.55161 * 22 13 12 41 41 H 1.08998 * 106.44573 * 125.59432 * 22 13 12 42 42 H 1.09002 * 110.07997 * 299.86228 * 25 7 5 43 43 H 1.08996 * 110.08153 * 61.36360 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1517 0.0000 4 6 3.6789 1.1518 -0.0006 5 6 1.4364 2.4256 0.0006 6 8 1.3843 3.0981 -1.0113 7 7 0.8205 2.8476 1.1226 8 6 -0.0235 4.0545 1.2442 9 6 -0.9816 3.7269 2.4340 10 1 -1.4421 4.6133 2.8703 11 6 -2.0073 2.7106 1.9312 12 6 -2.8116 2.1199 3.0725 13 7 -2.0193 1.8656 4.2517 14 6 -2.6415 1.1915 5.2683 15 1 -2.0955 0.4588 5.8441 16 6 -3.9741 1.4498 5.5589 17 7 -4.5736 2.4933 5.0260 18 14 -4.9166 0.3163 6.7062 19 1 -4.0220 -0.7751 7.1688 20 1 -5.4006 1.0893 7.8782 21 1 -6.0762 -0.2661 5.9843 22 6 -0.6573 2.2224 4.4595 23 6 0.0101 3.0292 3.3861 24 1 0.6373 3.7875 3.8548 25 6 0.8789 2.1864 2.4411 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 2.0470 -0.9353 0.0004 30 1 4.0419 1.0613 -1.0243 31 1 4.0425 0.3104 0.5896 32 1 4.0424 2.0835 0.4329 33 1 0.5887 4.9269 1.4726 34 1 -0.5931 4.2157 0.3289 35 1 -2.6859 3.2042 1.2354 36 1 -1.4864 1.9070 1.4105 37 1 -3.6131 2.8116 3.3312 38 1 -3.2537 1.1806 2.7402 39 1 -5.5048 2.6736 5.2288 40 1 -0.0763 1.3128 4.6116 41 1 -0.6267 2.7971 5.3851 42 1 0.4810 1.1741 2.3701 43 1 1.9073 2.1596 2.8011 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087927134.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:31 Heat of formation + Delta-G solvation = -13.066286 kcal Electronic energy + Delta-G solvation = -23118.891557 eV Core-core repulsion = 19971.113802 eV Total energy + Delta-G solvation = -3147.777755 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.75164 -39.83833 -37.29449 -36.34679 -34.13141 -33.06957 -31.98644 -31.15041 -29.38413 -27.26509 -26.07120 -25.24075 -23.68135 -23.34580 -22.11651 -19.48111 -19.32875 -18.84460 -17.50831 -17.32546 -16.88179 -16.20638 -16.01885 -15.68008 -15.52761 -15.04719 -14.80222 -14.72540 -14.23040 -14.10525 -13.91799 -13.77401 -13.54015 -13.35687 -13.13857 -12.96849 -12.86562 -12.74734 -12.51799 -12.43325 -12.21181 -12.04187 -11.77062 -11.43162 -11.25150 -11.20217 -10.92497 -10.59238 -9.90664 -9.70232 -8.51824 -7.60827 -5.52641 0.75693 1.46453 1.48765 1.56748 1.58762 2.01759 2.50837 3.26650 3.32989 3.51102 3.72744 3.79570 3.86555 3.95979 4.13784 4.24217 4.32861 4.45597 4.52307 4.54294 4.55837 4.64748 4.68960 4.77040 4.81073 4.82502 4.91099 4.98602 5.00823 5.07024 5.08576 5.14761 5.24480 5.30293 5.35305 5.43450 5.49246 5.63412 5.68226 6.02366 6.44132 6.53404 7.03143 7.27473 8.09449 8.29777 9.14703 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027279 B = 0.004918 C = 0.004671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.177920 B = 5692.546494 C = 5992.961971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 C -0.186 4.186 4 C -0.095 4.095 5 C 0.570 3.430 6 O -0.589 6.589 7 N -0.607 5.607 8 C 0.112 3.888 9 C -0.079 4.079 10 H 0.097 0.903 11 C -0.111 4.111 12 C 0.160 3.840 13 N -0.593 5.593 14 C -0.284 4.284 15 H 0.059 0.941 16 C -0.035 4.035 17 N -0.919 5.919 18 Si 0.964 3.036 19 H -0.266 1.266 20 H -0.289 1.289 21 H -0.291 1.291 22 C 0.179 3.821 23 C -0.095 4.095 24 H 0.099 0.901 25 C 0.118 3.882 26 H 0.084 0.916 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.157 0.843 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.054 0.946 38 H -0.015 1.015 39 H 0.250 0.750 40 H 0.016 0.984 41 H 0.006 0.994 42 H 0.068 0.932 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.881 -2.456 -6.906 15.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 C -0.189 4.189 4 C -0.152 4.152 5 C 0.361 3.639 6 O -0.471 6.471 7 N -0.340 5.340 8 C -0.010 4.010 9 C -0.098 4.098 10 H 0.116 0.884 11 C -0.148 4.148 12 C 0.035 3.965 13 N -0.317 5.317 14 C -0.415 4.415 15 H 0.077 0.923 16 C -0.233 4.233 17 N -0.564 5.564 18 Si 0.792 3.208 19 H -0.191 1.191 20 H -0.215 1.215 21 H -0.218 1.218 22 C 0.053 3.947 23 C -0.114 4.114 24 H 0.117 0.883 25 C -0.004 4.004 26 H 0.103 0.897 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.174 0.826 30 H 0.094 0.906 31 H 0.115 0.885 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.003 0.997 39 H 0.059 0.941 40 H 0.034 0.966 41 H 0.024 0.976 42 H 0.086 0.914 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 13.793 -2.032 -7.521 15.841 hybrid contribution -1.210 -0.391 0.604 1.408 sum 12.583 -2.423 -6.917 14.562 Atomic orbital electron populations 1.21149 0.93759 1.03746 1.01552 1.23558 0.95676 0.97701 0.94846 1.21570 0.98236 0.91479 1.07573 1.20650 0.87670 1.03612 1.03280 1.18675 0.77885 0.86090 0.81271 1.90757 1.63849 1.58637 1.33826 1.48773 1.48653 1.26794 1.09731 1.22663 0.92134 0.87791 0.98438 1.22195 0.94630 0.98457 0.94536 0.88441 1.21462 0.97670 0.98143 0.97569 1.20063 0.94374 0.97002 0.85099 1.42301 1.08342 1.66819 1.14232 1.19417 0.95084 1.15605 1.11364 0.92308 1.26011 0.99567 0.97733 0.99947 1.70010 1.11538 1.27960 1.46866 0.85267 0.78371 0.78707 0.78458 1.19063 1.21545 1.21751 1.19075 0.84939 0.95710 0.94997 1.21435 0.96571 0.98096 0.95274 0.88293 1.22185 1.00788 0.96521 0.80912 0.89743 0.91832 0.92850 0.82554 0.90573 0.88489 0.92248 0.89709 0.91360 0.92101 0.92714 0.92886 0.99701 0.94052 0.96619 0.97594 0.91406 0.88839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.12 71.23 0.65 -2.88 16 2 C -0.10 -2.03 9.69 24.52 0.24 -1.80 16 3 C -0.19 -4.31 4.97 -18.70 -0.09 -4.40 16 4 C -0.10 -1.60 10.02 71.24 0.71 -0.89 16 5 C 0.57 17.25 6.11 86.57 0.53 17.78 16 6 O -0.59 -22.35 17.40 -4.06 -0.07 -22.42 16 7 N -0.61 -17.06 2.55 -812.45 -2.07 -19.13 16 8 C 0.11 3.14 6.26 87.26 0.55 3.69 16 9 C -0.08 -2.49 3.72 -9.31 -0.03 -2.53 16 10 H 0.10 3.16 8.14 -2.39 -0.02 3.15 16 11 C -0.11 -4.07 5.02 30.10 0.15 -3.92 16 12 C 0.16 7.60 5.34 86.33 0.46 8.06 16 13 N -0.59 -28.74 3.13 -726.10 -2.27 -31.01 16 14 C -0.28 -15.31 9.19 84.03 0.77 -14.54 16 15 H 0.06 3.13 7.86 -2.91 -0.02 3.11 16 16 C -0.04 -1.94 5.16 84.86 0.44 -1.50 16 17 N -0.92 -52.86 10.79 21.65 0.23 -52.62 16 18 Si 0.96 43.89 29.57 68.60 2.03 45.91 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 20 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 22 C 0.18 7.01 5.58 86.17 0.48 7.49 16 23 C -0.09 -2.84 2.71 -11.19 -0.03 -2.87 16 24 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 25 C 0.12 3.07 4.86 86.35 0.42 3.49 16 26 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.06 1.81 3.50 -2.38 -0.01 1.80 16 28 H 0.05 1.43 8.09 -2.39 -0.02 1.41 16 29 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.10 1.13 8.11 -2.38 -0.02 1.11 16 32 H 0.06 1.03 8.08 -2.39 -0.02 1.02 16 33 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 34 H 0.07 2.05 7.99 -2.39 -0.02 2.03 16 35 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 36 H 0.05 1.95 4.87 -2.39 -0.01 1.94 16 37 H 0.05 2.93 5.61 -2.39 -0.01 2.91 16 38 H -0.02 -0.79 8.12 -2.39 -0.02 -0.81 16 39 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 40 H 0.02 0.61 7.77 -2.39 -0.02 0.59 16 41 H 0.01 0.26 8.10 -2.39 -0.02 0.24 16 42 H 0.07 1.92 5.68 -2.39 -0.01 1.90 16 43 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -66.64 329.67 4.08 -62.56 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: 0.99 Total: 11.50 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: 5.24 Total: 5.19 kcal Atomic # 7 Polarization: -98.65 SS G_CDS: -4.11 Total: -102.76 kcal Atomic # 8 Polarization: -22.35 SS G_CDS: -0.07 Total: -22.42 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -66.64 4.08 -62.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087927134.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.499 kcal (2) G-P(sol) polarization free energy of solvation -66.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds