Wall clock time and date at job start Tue Mar 31 2020 01:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32996 * 119.99826 * 2 1 4 4 C 1.50694 * 120.00142 * 180.02562 * 3 2 1 5 5 C 1.47103 * 119.99868 * 0.02562 * 3 2 1 6 6 O 1.21612 * 120.00087 * 354.05320 * 5 3 2 7 7 N 1.34778 * 120.00061 * 174.05097 * 5 3 2 8 8 C 1.47198 * 126.70107 * 356.46342 * 7 5 3 9 9 C 1.53739 * 106.42539 * 211.34703 * 8 7 5 10 10 H 1.09001 * 112.28593 * 103.79047 * 9 8 7 11 11 C 1.54819 * 108.88550 * 229.54902 * 9 8 7 12 12 N 1.48332 * 104.14581 * 137.53699 * 11 9 8 13 13 C 1.36936 * 128.20331 * 138.19898 * 12 11 9 14 14 H 1.07995 * 120.00630 * 196.37950 * 13 12 11 15 15 C 1.38815 * 119.99634 * 16.09720 * 13 12 11 16 16 N 1.31622 * 119.99960 * 8.60845 * 15 13 12 17 17 Si 1.86801 * 120.00198 * 188.60927 * 15 13 12 18 18 H 1.48502 * 109.47102 * 94.97408 * 17 15 13 19 19 H 1.48501 * 109.47044 * 214.97665 * 17 15 13 20 20 H 1.48501 * 109.46879 * 334.97766 * 17 15 13 21 21 C 1.48337 * 103.60445 * 317.93868 * 12 11 9 22 22 C 1.54457 * 104.32298 * 42.03099 * 21 12 11 23 23 C 1.53007 * 112.30112 * 96.98199 * 22 21 12 24 24 C 1.47197 * 126.70686 * 176.43152 * 7 5 3 25 25 H 1.08994 * 109.47784 * 59.99547 * 1 2 3 26 26 H 1.09004 * 109.46963 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47328 * 299.99123 * 1 2 3 28 28 H 1.07994 * 120.00401 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47436 * 269.27024 * 4 3 2 30 30 H 1.09003 * 109.46792 * 29.26812 * 4 3 2 31 31 H 1.08997 * 109.47453 * 149.26715 * 4 3 2 32 32 H 1.09000 * 110.06376 * 92.10738 * 8 7 5 33 33 H 1.08993 * 110.10938 * 330.61401 * 8 7 5 34 34 H 1.09005 * 110.57243 * 18.87794 * 11 9 8 35 35 H 1.09004 * 110.52668 * 256.17761 * 11 9 8 36 36 H 0.97000 * 120.00224 * 179.97438 * 16 15 13 37 37 H 1.08998 * 110.46544 * 160.73455 * 21 12 11 38 38 H 1.08992 * 110.46168 * 283.32612 * 21 12 11 39 39 H 1.09002 * 109.46621 * 61.01421 * 23 22 21 40 40 H 1.08988 * 109.47224 * 181.01762 * 23 22 21 41 41 H 1.09001 * 109.46784 * 301.02008 * 23 22 21 42 42 H 1.09002 * 110.05842 * 29.40777 * 24 7 5 43 43 H 1.08997 * 110.06618 * 267.89462 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6789 1.1519 -0.0006 5 6 1.4364 2.4257 0.0006 6 8 0.2251 2.4285 -0.1081 7 7 2.1048 3.5898 0.1215 8 6 3.5520 3.7553 0.3334 9 6 3.7261 5.0392 1.1610 10 1 3.9504 4.8296 2.2069 11 6 4.7947 5.9312 0.4832 12 7 4.2278 7.2997 0.5626 13 6 4.8740 8.4675 0.8687 14 1 4.3054 9.3421 1.1481 15 6 6.2603 8.5256 0.8256 16 7 6.9461 7.5173 0.3301 17 14 7.1525 10.0346 1.4708 18 1 7.5591 9.8043 2.8804 19 1 8.3588 10.2882 0.6427 20 1 6.2487 11.2109 1.4023 21 6 2.7965 7.1046 0.2254 22 6 2.3964 5.8210 0.9857 23 6 1.7182 6.1259 2.3229 24 6 1.5304 4.9440 0.0669 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8901 28 1 2.0470 -0.9352 -0.0004 29 1 4.0427 1.1648 1.0268 30 1 4.0420 0.2555 -0.5034 31 1 4.0420 2.0353 -0.5257 32 1 4.0611 3.8563 -0.6250 33 1 3.9508 2.9009 0.8802 34 1 4.9356 5.6369 -0.5569 35 1 5.7381 5.8774 1.0266 36 1 7.9147 7.5580 0.2996 37 1 2.2047 7.9521 0.5708 38 1 2.6737 6.9651 -0.8486 39 1 0.8051 6.6943 2.1459 40 1 1.4725 5.1914 2.8271 41 1 2.3939 6.7094 2.9483 42 1 0.5013 4.9283 0.4260 43 1 1.5649 5.3240 -0.9541 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091581160.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:47 Heat of formation + Delta-G solvation = 26.125751 kcal Electronic energy + Delta-G solvation = -22760.145740 eV Core-core repulsion = 19614.067479 eV Total energy + Delta-G solvation = -3146.078260 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.44274 -38.58837 -35.13765 -35.03171 -32.81784 -31.03813 -30.04953 -29.81042 -26.64621 -26.08965 -25.32488 -24.42117 -22.64843 -21.16014 -20.49436 -18.79523 -17.99180 -16.73811 -16.21467 -15.66989 -14.96810 -14.76102 -14.61287 -14.11151 -13.95471 -13.65019 -13.38103 -13.22932 -12.99719 -12.76534 -12.53477 -12.15510 -12.14665 -11.87480 -11.62540 -11.59803 -11.44750 -11.15005 -10.89228 -10.85863 -10.59561 -10.11624 -9.98626 -9.92219 -9.78625 -9.68613 -9.32891 -9.14111 -8.70244 -8.30971 -6.88115 -5.82365 -3.17216 1.40910 3.24455 3.35785 3.36559 3.42097 3.43568 4.43806 4.55916 4.82103 4.91412 4.99459 5.17511 5.24382 5.35306 5.47814 5.50548 5.53426 5.63177 5.65456 5.69397 5.75873 5.82379 5.86042 5.94307 6.05377 6.07013 6.11678 6.19450 6.31884 6.39597 6.43676 6.44506 6.54428 6.56256 6.73514 6.75177 6.90290 7.26920 7.49192 7.67967 7.80731 8.17396 8.35090 9.07528 9.70576 10.49189 11.31417 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034388 B = 0.004356 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.045894 B = 6427.058159 C = 6973.013748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.080 4.080 3 C -0.184 4.184 4 C -0.131 4.131 5 C 0.564 3.436 6 O -0.549 6.549 7 N -0.608 5.608 8 C 0.091 3.909 9 C -0.120 4.120 10 H 0.082 0.918 11 C 0.163 3.837 12 N -0.593 5.593 13 C -0.224 4.224 14 H 0.076 0.924 15 C -0.005 4.005 16 N -0.916 5.916 17 Si 0.911 3.089 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.280 1.280 21 C 0.136 3.864 22 C -0.087 4.087 23 C -0.119 4.119 24 C 0.118 3.882 25 H 0.082 0.918 26 H 0.048 0.952 27 H 0.075 0.925 28 H 0.122 0.878 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.024 0.976 35 H 0.090 0.910 36 H 0.254 0.746 37 H 0.049 0.951 38 H 0.027 0.973 39 H 0.050 0.950 40 H 0.045 0.955 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.632 -12.655 0.650 14.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.100 4.100 3 C -0.187 4.187 4 C -0.187 4.187 5 C 0.356 3.644 6 O -0.429 6.429 7 N -0.340 5.340 8 C -0.031 4.031 9 C -0.141 4.141 10 H 0.100 0.900 11 C 0.037 3.963 12 N -0.316 5.316 13 C -0.352 4.352 14 H 0.094 0.906 15 C -0.202 4.202 16 N -0.562 5.562 17 Si 0.742 3.258 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.205 1.205 21 C 0.009 3.991 22 C -0.090 4.090 23 C -0.176 4.176 24 C -0.005 4.005 25 H 0.101 0.899 26 H 0.067 0.933 27 H 0.094 0.906 28 H 0.140 0.860 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.042 0.958 35 H 0.108 0.892 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.044 0.956 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.058 -12.566 0.582 14.939 hybrid contribution 0.691 0.729 0.246 1.035 sum -7.367 -11.837 0.828 13.967 Atomic orbital electron populations 1.20990 0.91901 1.00588 1.04120 1.23546 0.97099 0.96505 0.92873 1.21456 0.96536 0.92968 1.07745 1.21388 0.91114 1.03788 1.02445 1.18087 0.86557 0.82992 0.76798 1.90748 1.13694 1.87052 1.51441 1.48520 1.09392 1.05531 1.70554 1.22942 0.80686 0.99317 1.00204 1.23397 0.97239 0.93815 0.99614 0.89976 1.21820 0.95142 0.82675 0.96695 1.45056 1.03328 1.03323 1.79861 1.19008 0.89106 0.88618 1.38495 0.90622 1.24884 0.96564 0.98073 1.00680 1.69871 1.06047 1.31226 1.49081 0.86114 0.79335 0.82102 0.78295 1.21570 1.21701 1.20519 1.21876 0.88165 0.93690 0.95340 1.22366 0.94399 0.96701 0.95524 1.21566 0.99700 1.00548 0.95793 1.22150 0.97886 0.80887 0.99583 0.89946 0.93284 0.90606 0.86012 0.90828 0.91775 0.89617 0.90847 0.89413 0.95794 0.89194 0.93612 0.93223 0.95576 0.93105 0.93574 0.91735 0.90826 0.91429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 8.45 36.01 0.30 -1.06 16 2 C -0.08 -0.88 9.95 -36.13 -0.36 -1.24 16 3 C -0.18 -2.32 5.98 -102.85 -0.62 -2.94 16 4 C -0.13 -1.36 8.05 36.00 0.29 -1.07 16 5 C 0.56 8.91 7.77 -12.66 -0.10 8.81 16 6 O -0.55 -9.85 13.32 5.27 0.07 -9.78 16 7 N -0.61 -9.53 3.32 -173.06 -0.57 -10.10 16 8 C 0.09 1.35 4.61 -3.28 -0.02 1.34 16 9 C -0.12 -2.11 3.76 -88.09 -0.33 -2.44 16 10 H 0.08 1.44 7.93 -51.93 -0.41 1.02 16 11 C 0.16 3.62 5.50 -2.07 -0.01 3.61 16 12 N -0.59 -14.42 3.37 -168.24 -0.57 -14.99 16 13 C -0.22 -6.02 10.38 -15.06 -0.16 -6.18 16 14 H 0.08 1.98 7.84 -52.49 -0.41 1.57 16 15 C 0.00 -0.14 5.41 -17.43 -0.09 -0.23 16 16 N -0.92 -25.84 10.86 55.49 0.60 -25.24 16 17 Si 0.91 21.42 29.56 -169.99 -5.03 16.40 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 C 0.14 2.73 6.37 -2.27 -0.01 2.71 16 22 C -0.09 -1.49 1.08 -152.17 -0.16 -1.66 16 23 C -0.12 -1.87 8.61 37.16 0.32 -1.55 16 24 C 0.12 1.90 6.24 -3.28 -0.02 1.88 16 25 H 0.08 1.08 7.06 -51.93 -0.37 0.71 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.98 7.39 -51.93 -0.38 0.59 16 28 H 0.12 0.99 8.05 -52.49 -0.42 0.56 16 29 H 0.07 0.71 7.29 -51.93 -0.38 0.33 16 30 H 0.06 0.55 8.06 -51.93 -0.42 0.13 16 31 H 0.09 0.96 4.83 -51.93 -0.25 0.70 16 32 H 0.07 1.11 6.48 -51.93 -0.34 0.78 16 33 H 0.09 1.13 4.66 -51.93 -0.24 0.88 16 34 H 0.02 0.56 7.18 -51.93 -0.37 0.18 16 35 H 0.09 2.25 6.44 -51.93 -0.33 1.92 16 36 H 0.25 6.95 8.31 -40.82 -0.34 6.62 16 37 H 0.05 0.97 7.92 -51.93 -0.41 0.56 16 38 H 0.03 0.53 7.17 -51.93 -0.37 0.16 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.05 0.69 8.14 -51.94 -0.42 0.26 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.07 1.19 7.60 -51.93 -0.39 0.79 16 43 H 0.07 1.10 7.10 -51.93 -0.37 0.73 16 LS Contribution 327.81 15.07 4.94 4.94 Total: -1.00 -29.98 327.81 -8.22 -38.20 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -6.70 Total: 0.58 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -0.97 Total: 0.00 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: -0.54 Total: -50.33 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.07 Total: -9.78 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -29.98 -8.22 -38.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091581160.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.325 kcal (2) G-P(sol) polarization free energy of solvation -29.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds