Wall clock time and date at job start Tue Mar 31 2020 01:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32996 * 119.99826 * 2 1 4 4 C 1.50694 * 120.00142 * 180.02562 * 3 2 1 5 5 C 1.47103 * 119.99868 * 0.02562 * 3 2 1 6 6 O 1.21612 * 120.00087 * 354.05320 * 5 3 2 7 7 N 1.34778 * 120.00061 * 174.05097 * 5 3 2 8 8 C 1.47198 * 126.70107 * 356.46342 * 7 5 3 9 9 C 1.53739 * 106.42539 * 211.34703 * 8 7 5 10 10 H 1.09001 * 112.28593 * 103.79047 * 9 8 7 11 11 C 1.54819 * 108.88550 * 229.54902 * 9 8 7 12 12 N 1.48332 * 104.14581 * 137.53699 * 11 9 8 13 13 C 1.36936 * 128.20331 * 138.19898 * 12 11 9 14 14 H 1.07995 * 120.00630 * 196.37950 * 13 12 11 15 15 C 1.38815 * 119.99634 * 16.09720 * 13 12 11 16 16 N 1.31622 * 119.99960 * 8.60845 * 15 13 12 17 17 Si 1.86801 * 120.00198 * 188.60927 * 15 13 12 18 18 H 1.48502 * 109.47102 * 94.97408 * 17 15 13 19 19 H 1.48501 * 109.47044 * 214.97665 * 17 15 13 20 20 H 1.48501 * 109.46879 * 334.97766 * 17 15 13 21 21 C 1.48337 * 103.60445 * 317.93868 * 12 11 9 22 22 C 1.54457 * 104.32298 * 42.03099 * 21 12 11 23 23 C 1.53007 * 112.30112 * 96.98199 * 22 21 12 24 24 C 1.47197 * 126.70686 * 176.43152 * 7 5 3 25 25 H 1.08994 * 109.47784 * 59.99547 * 1 2 3 26 26 H 1.09004 * 109.46963 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47328 * 299.99123 * 1 2 3 28 28 H 1.07994 * 120.00401 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47436 * 269.27024 * 4 3 2 30 30 H 1.09003 * 109.46792 * 29.26812 * 4 3 2 31 31 H 1.08997 * 109.47453 * 149.26715 * 4 3 2 32 32 H 1.09000 * 110.06376 * 92.10738 * 8 7 5 33 33 H 1.08993 * 110.10938 * 330.61401 * 8 7 5 34 34 H 1.09005 * 110.57243 * 18.87794 * 11 9 8 35 35 H 1.09004 * 110.52668 * 256.17761 * 11 9 8 36 36 H 0.97000 * 120.00224 * 179.97438 * 16 15 13 37 37 H 1.08998 * 110.46544 * 160.73455 * 21 12 11 38 38 H 1.08992 * 110.46168 * 283.32612 * 21 12 11 39 39 H 1.09002 * 109.46621 * 61.01421 * 23 22 21 40 40 H 1.08988 * 109.47224 * 181.01762 * 23 22 21 41 41 H 1.09001 * 109.46784 * 301.02008 * 23 22 21 42 42 H 1.09002 * 110.05842 * 29.40777 * 24 7 5 43 43 H 1.08997 * 110.06618 * 267.89462 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6789 1.1519 -0.0006 5 6 1.4364 2.4257 0.0006 6 8 0.2251 2.4285 -0.1081 7 7 2.1048 3.5898 0.1215 8 6 3.5520 3.7553 0.3334 9 6 3.7261 5.0392 1.1610 10 1 3.9504 4.8296 2.2069 11 6 4.7947 5.9312 0.4832 12 7 4.2278 7.2997 0.5626 13 6 4.8740 8.4675 0.8687 14 1 4.3054 9.3421 1.1481 15 6 6.2603 8.5256 0.8256 16 7 6.9461 7.5173 0.3301 17 14 7.1525 10.0346 1.4708 18 1 7.5591 9.8043 2.8804 19 1 8.3588 10.2882 0.6427 20 1 6.2487 11.2109 1.4023 21 6 2.7965 7.1046 0.2254 22 6 2.3964 5.8210 0.9857 23 6 1.7182 6.1259 2.3229 24 6 1.5304 4.9440 0.0669 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8901 28 1 2.0470 -0.9352 -0.0004 29 1 4.0427 1.1648 1.0268 30 1 4.0420 0.2555 -0.5034 31 1 4.0420 2.0353 -0.5257 32 1 4.0611 3.8563 -0.6250 33 1 3.9508 2.9009 0.8802 34 1 4.9356 5.6369 -0.5569 35 1 5.7381 5.8774 1.0266 36 1 7.9147 7.5580 0.2996 37 1 2.2047 7.9521 0.5708 38 1 2.6737 6.9651 -0.8486 39 1 0.8051 6.6943 2.1459 40 1 1.4725 5.1914 2.8271 41 1 2.3939 6.7094 2.9483 42 1 0.5013 4.9283 0.4260 43 1 1.5649 5.3240 -0.9541 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091581160.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:47 Heat of formation + Delta-G solvation = 9.026702 kcal Electronic energy + Delta-G solvation = -22760.887210 eV Core-core repulsion = 19614.067479 eV Total energy + Delta-G solvation = -3146.819731 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.74518 -39.93723 -36.67809 -36.04763 -34.47675 -32.63206 -31.50980 -30.94398 -28.02668 -27.63608 -26.79788 -25.64107 -24.03208 -22.35592 -22.18730 -20.18771 -19.23175 -18.60731 -17.49367 -16.98468 -16.64342 -16.13102 -15.87033 -15.59242 -15.16814 -14.95129 -14.87927 -14.43668 -14.04456 -13.98839 -13.78668 -13.52350 -13.30433 -13.18562 -13.13333 -13.01122 -12.71836 -12.62403 -12.52574 -12.29983 -12.17883 -11.81717 -11.77312 -11.47202 -11.35747 -11.17375 -10.70900 -10.52954 -10.12864 -9.50759 -8.84269 -7.87743 -5.23931 0.44783 1.48928 1.49378 1.58497 2.04582 2.23529 2.50806 3.30918 3.38906 3.48225 3.75574 3.94014 3.96332 3.98004 4.20458 4.24519 4.33631 4.40292 4.53637 4.57715 4.67903 4.72556 4.77561 4.78657 4.88342 4.89919 4.91782 4.97317 4.98482 5.11522 5.13299 5.22734 5.24002 5.36495 5.41783 5.47857 5.54249 5.59365 5.69494 5.73256 6.22449 6.59579 7.04889 7.14722 7.71098 8.51671 9.25105 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034388 B = 0.004356 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.045894 B = 6427.058159 C = 6973.013748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.060 4.060 3 C -0.207 4.207 4 C -0.128 4.128 5 C 0.556 3.444 6 O -0.577 6.577 7 N -0.610 5.610 8 C 0.102 3.898 9 C -0.111 4.111 10 H 0.087 0.913 11 C 0.171 3.829 12 N -0.617 5.617 13 C -0.236 4.236 14 H 0.077 0.923 15 C -0.057 4.057 16 N -0.944 5.944 17 Si 0.974 3.026 18 H -0.287 1.287 19 H -0.295 1.295 20 H -0.270 1.270 21 C 0.135 3.865 22 C -0.078 4.078 23 C -0.112 4.112 24 C 0.122 3.878 25 H 0.062 0.938 26 H 0.077 0.923 27 H 0.058 0.942 28 H 0.160 0.840 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.115 0.885 34 H 0.008 0.992 35 H 0.058 0.942 36 H 0.249 0.751 37 H 0.053 0.947 38 H 0.024 0.976 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.049 0.951 42 H 0.076 0.924 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.131 -14.302 1.269 16.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.080 4.080 3 C -0.210 4.210 4 C -0.184 4.184 5 C 0.350 3.650 6 O -0.460 6.460 7 N -0.342 5.342 8 C -0.020 4.020 9 C -0.132 4.132 10 H 0.105 0.895 11 C 0.045 3.955 12 N -0.340 5.340 13 C -0.365 4.365 14 H 0.095 0.905 15 C -0.251 4.251 16 N -0.591 5.591 17 Si 0.803 3.197 18 H -0.214 1.214 19 H -0.222 1.222 20 H -0.195 1.195 21 C 0.009 3.991 22 C -0.080 4.080 23 C -0.169 4.169 24 C -0.001 4.001 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.177 0.823 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.133 0.867 34 H 0.026 0.974 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.042 0.958 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.582 -14.221 1.202 16.653 hybrid contribution 0.749 1.206 0.005 1.420 sum -7.832 -13.015 1.207 15.238 Atomic orbital electron populations 1.20968 0.92637 1.01850 1.02266 1.23916 0.96760 0.97431 0.89849 1.21519 0.97656 0.91729 1.10062 1.21355 0.89427 1.04419 1.03161 1.18737 0.86485 0.83843 0.75939 1.90737 1.14994 1.87494 1.52759 1.48545 1.09467 1.05407 1.70748 1.22879 0.80500 0.98758 0.99912 1.23229 0.95742 0.94394 0.99786 0.89499 1.21634 0.95221 0.82990 0.95685 1.45330 1.05073 1.03457 1.80189 1.19333 0.89650 0.89620 1.37917 0.90544 1.25632 0.97285 1.00781 1.01448 1.70046 1.05793 1.32880 1.50427 0.85127 0.77888 0.79318 0.77380 1.21361 1.22173 1.19489 1.21999 0.86122 0.95391 0.95583 1.22250 0.94436 0.95194 0.96127 1.21505 0.99777 1.01122 0.94524 1.22017 0.97737 0.81307 0.99038 0.91961 0.90410 0.92375 0.82256 0.89897 0.89436 0.90819 0.91198 0.86704 0.97424 0.92402 0.94138 0.92857 0.95848 0.91583 0.92403 0.93205 0.90581 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.50 8.45 71.24 0.60 -1.90 16 2 C -0.06 -1.11 9.95 24.52 0.24 -0.87 16 3 C -0.21 -4.69 5.98 -18.71 -0.11 -4.81 16 4 C -0.13 -2.25 8.05 71.23 0.57 -1.68 16 5 C 0.56 16.85 7.77 86.57 0.67 17.52 16 6 O -0.58 -20.37 13.32 -4.07 -0.05 -20.43 16 7 N -0.61 -18.41 3.32 -819.68 -2.72 -21.13 16 8 C 0.10 2.92 4.61 86.50 0.40 3.31 16 9 C -0.11 -3.85 3.76 -9.15 -0.03 -3.89 16 10 H 0.09 2.96 7.93 -2.39 -0.02 2.94 16 11 C 0.17 7.77 5.50 86.65 0.48 8.25 16 12 N -0.62 -30.57 3.37 -686.19 -2.31 -32.88 16 13 C -0.24 -12.89 10.38 84.03 0.87 -12.01 16 14 H 0.08 4.04 7.84 -2.91 -0.02 4.02 16 15 C -0.06 -3.17 5.41 84.86 0.46 -2.71 16 16 N -0.94 -54.59 10.86 21.65 0.24 -54.35 16 17 Si 0.97 44.52 29.56 68.60 2.03 46.55 16 18 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 19 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 21 C 0.14 5.43 6.37 86.52 0.55 5.98 16 22 C -0.08 -2.60 1.08 -50.67 -0.05 -2.66 16 23 C -0.11 -3.37 8.61 71.98 0.62 -2.75 16 24 C 0.12 3.84 6.24 86.49 0.54 4.38 16 25 H 0.06 1.57 7.06 -2.39 -0.02 1.55 16 26 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 27 H 0.06 1.43 7.39 -2.38 -0.02 1.41 16 28 H 0.16 1.76 8.05 -2.91 -0.02 1.74 16 29 H 0.08 1.30 7.29 -2.39 -0.02 1.29 16 30 H 0.09 1.15 8.06 -2.39 -0.02 1.13 16 31 H 0.07 1.48 4.83 -2.39 -0.01 1.47 16 32 H 0.07 2.09 6.48 -2.39 -0.02 2.07 16 33 H 0.12 2.70 4.66 -2.39 -0.01 2.69 16 34 H 0.01 0.38 7.18 -2.38 -0.02 0.36 16 35 H 0.06 3.00 6.44 -2.39 -0.02 2.98 16 36 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 37 H 0.05 2.07 7.92 -2.39 -0.02 2.05 16 38 H 0.02 0.96 7.17 -2.39 -0.02 0.95 16 39 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.05 1.64 8.14 -2.39 -0.02 1.63 16 42 H 0.08 2.37 7.60 -2.39 -0.02 2.35 16 43 H 0.06 2.04 7.10 -2.39 -0.02 2.03 16 Total: -1.00 -65.82 327.81 3.98 -61.84 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.99 Total: 14.21 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: 5.81 Total: 6.19 kcal Atomic # 7 Polarization: -103.57 SS G_CDS: -4.80 Total: -108.36 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.05 Total: -20.43 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -65.82 3.98 -61.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091581160.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.869 kcal (2) G-P(sol) polarization free energy of solvation -65.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds