Wall clock time and date at job start Tue Mar 31 2020 00:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52995 * 109.46768 * 89.19931 * 3 2 1 5 5 C 1.53004 * 109.46571 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47044 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47431 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99626 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00066 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00059 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47425 * 180.02562 * 10 9 7 12 12 C 1.53781 * 113.61609 * 175.00005 * 11 10 9 13 13 C 1.53781 * 87.08070 * 139.98229 * 12 11 10 14 14 N 1.46497 * 113.61305 * 219.93536 * 13 12 11 15 15 C 1.36944 * 119.99791 * 203.46713 * 14 13 12 16 16 H 1.07993 * 120.00042 * 0.02562 * 15 14 13 17 17 C 1.38812 * 119.99770 * 179.97438 * 15 14 13 18 18 N 1.31624 * 120.00274 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99962 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46991 * 60.00036 * 19 17 15 21 21 H 1.48495 * 109.47111 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47014 * 300.00285 * 19 17 15 23 23 C 1.53786 * 87.17350 * 334.52830 * 13 12 11 24 24 H 4.44642 * 5.63375 * 180.02562 * 4 1 2 25 25 H 1.09000 * 109.46942 * 329.20158 * 3 2 1 26 26 H 1.08997 * 109.47050 * 209.20313 * 3 2 1 27 27 H 1.09000 * 109.47204 * 60.00387 * 4 3 2 28 28 H 1.08997 * 109.47646 * 300.00016 * 4 3 2 29 29 H 1.09005 * 109.47148 * 60.00752 * 5 4 3 30 30 H 1.08995 * 109.47298 * 299.99898 * 5 4 3 31 31 H 1.09005 * 109.47358 * 59.99831 * 6 5 4 32 32 H 1.09006 * 109.47182 * 300.00516 * 6 5 4 33 33 H 0.96996 * 120.00586 * 0.02562 * 9 7 6 34 34 H 1.08997 * 109.47114 * 60.00231 * 10 9 7 35 35 H 1.09006 * 109.47306 * 300.00712 * 10 9 7 36 36 H 1.08996 * 112.84723 * 43.80825 * 11 10 9 37 37 H 1.08999 * 113.61181 * 25.43284 * 12 11 10 38 38 H 1.08998 * 113.61680 * 254.52836 * 12 11 10 39 39 H 1.09002 * 113.61445 * 89.11830 * 13 12 11 40 40 H 0.96995 * 120.00146 * 23.47603 * 14 13 12 41 41 H 0.96996 * 120.00281 * 179.97438 * 18 17 15 42 42 H 1.08992 * 113.61675 * 140.02412 * 23 13 12 43 43 H 1.09000 * 113.60973 * 270.92699 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1560 -0.0193 -1.4423 5 6 4.6860 -0.0179 -1.4423 6 6 5.1960 -0.0372 -2.8847 7 6 6.7030 -0.0366 -2.8847 8 8 7.3094 -0.0225 -1.8345 9 7 7.3769 -0.0526 -4.0518 10 6 8.8419 -0.0525 -4.0518 11 6 9.3519 -0.0716 -5.4942 12 6 10.8806 0.0497 -5.6087 13 6 10.8007 -0.9964 -6.7330 14 7 11.8855 -1.9804 -6.6972 15 6 12.2402 -2.6502 -7.8377 16 1 11.7206 -2.4527 -8.7636 17 6 13.2684 -3.5821 -7.8039 18 7 13.9021 -3.8224 -6.6755 19 14 13.7529 -4.4953 -9.3598 20 1 14.1870 -3.5195 -10.3916 21 1 14.8687 -5.4279 -9.0593 22 1 12.5877 -5.2648 -9.8653 23 6 9.4997 -1.4896 -6.0778 24 1 -1.0500 0.0002 0.0000 25 1 3.0098 -0.8819 0.5262 26 1 3.0090 0.8978 0.5014 27 1 2.7923 0.8633 -1.9685 28 1 2.7931 -0.9165 -1.9437 29 1 5.0501 -0.9004 -0.9160 30 1 5.0486 0.8795 -0.9411 31 1 4.8319 0.8453 -3.4107 32 1 4.8334 -0.9345 -3.3864 33 1 6.8919 -0.0641 -4.8918 34 1 9.2052 -0.9353 -3.5259 35 1 9.2052 0.8445 -3.5502 36 1 8.8095 0.6151 -6.1440 37 1 11.4138 -0.2994 -4.7245 38 1 11.2167 1.0298 -5.9474 39 1 10.6544 -0.5636 -7.7226 40 1 12.3523 -2.1575 -5.8656 41 1 14.6203 -4.4739 -6.6518 42 1 8.7217 -1.7515 -6.7949 43 1 9.6561 -2.2589 -5.3216 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100259882.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:37 Heat of formation + Delta-G solvation = 18.866396 kcal Electronic energy + Delta-G solvation = -20071.019291 eV Core-core repulsion = 16924.626241 eV Total energy + Delta-G solvation = -3146.393050 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.87975 -38.48738 -36.46338 -34.66960 -33.48705 -33.25556 -30.59589 -30.01965 -27.50142 -25.18067 -25.06225 -23.74424 -21.70720 -21.02726 -20.40117 -19.04524 -18.38873 -17.14799 -16.90341 -16.37821 -16.06945 -15.31803 -14.85476 -14.74653 -14.56248 -14.05096 -13.88824 -13.58475 -13.14240 -13.07111 -12.90455 -12.13445 -12.01321 -11.88168 -11.78181 -11.57930 -11.37193 -11.23672 -11.00165 -10.82852 -10.55486 -10.53550 -10.43364 -10.25802 -10.17053 -9.82447 -9.80533 -9.47580 -9.01310 -8.86704 -6.96856 -5.78596 -3.07632 2.45970 2.50142 2.61312 3.17043 3.42693 3.47108 3.48358 4.00006 4.52652 4.57841 4.60298 4.61048 4.94567 4.96143 4.98585 5.03041 5.17325 5.22918 5.35085 5.41037 5.45509 5.46369 5.50856 5.63752 5.69727 5.82217 5.85383 5.90847 5.93819 6.03544 6.08838 6.26150 6.31046 6.35861 6.46812 6.58789 6.82266 7.11025 7.27456 7.48139 7.67940 8.20263 8.39937 9.50838 10.09267 10.43440 11.43672 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.037397 B = 0.002085 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.548394 B =13424.394072 C =13681.584867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.184 4.184 3 C -0.016 4.016 4 C -0.114 4.114 5 C -0.105 4.105 6 C -0.141 4.141 7 C 0.507 3.493 8 O -0.545 6.545 9 N -0.727 5.727 10 C 0.131 3.869 11 C -0.127 4.127 12 C -0.142 4.142 13 C 0.165 3.835 14 N -0.713 5.713 15 C -0.246 4.246 16 H 0.070 0.930 17 C -0.013 4.013 18 N -0.932 5.932 19 Si 0.908 3.092 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.160 4.160 24 H 0.216 0.784 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.400 0.600 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.053 0.947 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.989 10.285 8.799 26.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.184 4.184 3 C -0.052 4.052 4 C -0.152 4.152 5 C -0.143 4.143 6 C -0.181 4.181 7 C 0.294 3.706 8 O -0.422 6.422 9 N -0.378 5.378 10 C 0.008 3.992 11 C -0.146 4.146 12 C -0.182 4.182 13 C 0.053 3.947 14 N -0.351 5.351 15 C -0.377 4.377 16 H 0.088 0.912 17 C -0.209 4.209 18 N -0.580 5.580 19 Si 0.739 3.261 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.201 4.201 24 H 0.233 0.767 25 H 0.107 0.893 26 H 0.106 0.894 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.234 0.766 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.219 0.781 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -22.439 10.194 9.372 26.368 hybrid contribution -0.044 -0.638 -1.009 1.195 sum -22.483 9.555 8.363 25.821 Atomic orbital electron populations 1.24920 0.96011 1.01548 1.00930 1.23243 0.94678 1.00116 1.00345 1.18779 0.84471 1.03677 0.98295 1.21564 0.95398 1.02810 0.95435 1.21348 0.93793 1.04003 0.95152 1.21680 0.92145 1.04427 0.99868 1.20716 0.90199 0.75974 0.83752 1.90707 1.70608 1.49562 1.31356 1.46104 1.08007 1.75199 1.08506 1.21428 0.78566 1.02027 0.97199 1.22684 0.97683 0.99811 0.94455 1.23424 0.93327 1.00299 1.01112 1.21525 0.88198 0.89620 0.95353 1.42405 1.37971 1.44431 1.10301 1.19260 1.13388 1.15907 0.89125 0.91154 1.24772 0.98888 1.00154 0.97066 1.69651 1.25972 1.37592 1.24791 0.86262 0.77786 0.79476 0.82608 1.21233 1.21673 1.21266 1.23989 1.01210 0.94478 1.00466 0.76748 0.89344 0.89394 0.91497 0.91422 0.90820 0.90912 0.88975 0.88856 0.76624 0.91290 0.91870 0.89425 0.90102 0.92005 0.90773 0.78065 0.93393 0.92801 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.60 19.25 29.55 0.57 -1.03 16 2 C -0.18 -1.51 13.34 -37.12 -0.50 -2.01 16 3 C -0.02 -0.10 5.70 -29.52 -0.17 -0.27 16 4 C -0.11 -0.71 5.17 -26.73 -0.14 -0.85 16 5 C -0.11 -0.80 4.50 -26.73 -0.12 -0.92 16 6 C -0.14 -1.05 5.70 -27.88 -0.16 -1.21 16 7 C 0.51 5.90 7.83 -10.99 -0.09 5.82 16 8 O -0.54 -8.67 15.98 5.56 0.09 -8.58 16 9 N -0.73 -7.79 5.56 -60.29 -0.33 -8.12 16 10 C 0.13 1.70 5.51 -4.04 -0.02 1.68 16 11 C -0.13 -1.66 3.76 -89.67 -0.34 -2.00 16 12 C -0.14 -2.24 7.39 -25.92 -0.19 -2.43 16 13 C 0.17 3.17 4.47 -67.12 -0.30 2.87 16 14 N -0.71 -17.77 5.41 -52.64 -0.28 -18.05 16 15 C -0.25 -6.79 9.97 -15.06 -0.15 -6.94 16 16 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 17 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 18 N -0.93 -28.15 13.06 55.49 0.72 -27.43 16 19 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 23 C -0.16 -2.62 7.45 -25.77 -0.19 -2.81 16 24 H 0.22 0.88 7.80 -54.09 -0.42 0.46 16 25 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 30 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.40 3.21 8.47 -40.82 -0.35 2.87 16 34 H 0.07 1.04 7.85 -51.93 -0.41 0.63 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.41 8.11 -51.93 -0.42 0.99 16 40 H 0.39 10.24 7.91 -40.82 -0.32 9.92 16 41 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.08 1.42 7.90 -51.93 -0.41 1.01 16 LS Contribution 366.30 15.07 5.52 5.52 Total: -1.00 -33.09 366.30 -8.56 -41.65 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -7.36 Total: 8.34 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -1.89 Total: -10.57 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: 0.10 Total: -53.60 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.09 Total: -8.58 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.09 -8.56 -41.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100259882.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.514 kcal (2) G-P(sol) polarization free energy of solvation -33.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds