Wall clock time and date at job start Tue Mar 31 2020 00:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52995 * 109.46768 * 89.19931 * 3 2 1 5 5 C 1.53004 * 109.46571 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47044 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47431 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99626 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00066 * 179.97438 * 7 6 5 10 10 C 1.46500 * 120.00059 * 180.02562 * 9 7 6 11 11 C 1.53002 * 109.47425 * 180.02562 * 10 9 7 12 12 C 1.53781 * 113.61609 * 175.00005 * 11 10 9 13 13 C 1.53781 * 87.08070 * 139.98229 * 12 11 10 14 14 N 1.46497 * 113.61305 * 219.93536 * 13 12 11 15 15 C 1.36944 * 119.99791 * 203.46713 * 14 13 12 16 16 H 1.07993 * 120.00042 * 0.02562 * 15 14 13 17 17 C 1.38812 * 119.99770 * 179.97438 * 15 14 13 18 18 N 1.31624 * 120.00274 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99962 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46991 * 60.00036 * 19 17 15 21 21 H 1.48495 * 109.47111 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47014 * 300.00285 * 19 17 15 23 23 C 1.53786 * 87.17350 * 334.52830 * 13 12 11 24 24 H 4.44642 * 5.63375 * 180.02562 * 4 1 2 25 25 H 1.09000 * 109.46942 * 329.20158 * 3 2 1 26 26 H 1.08997 * 109.47050 * 209.20313 * 3 2 1 27 27 H 1.09000 * 109.47204 * 60.00387 * 4 3 2 28 28 H 1.08997 * 109.47646 * 300.00016 * 4 3 2 29 29 H 1.09005 * 109.47148 * 60.00752 * 5 4 3 30 30 H 1.08995 * 109.47298 * 299.99898 * 5 4 3 31 31 H 1.09005 * 109.47358 * 59.99831 * 6 5 4 32 32 H 1.09006 * 109.47182 * 300.00516 * 6 5 4 33 33 H 0.96996 * 120.00586 * 0.02562 * 9 7 6 34 34 H 1.08997 * 109.47114 * 60.00231 * 10 9 7 35 35 H 1.09006 * 109.47306 * 300.00712 * 10 9 7 36 36 H 1.08996 * 112.84723 * 43.80825 * 11 10 9 37 37 H 1.08999 * 113.61181 * 25.43284 * 12 11 10 38 38 H 1.08998 * 113.61680 * 254.52836 * 12 11 10 39 39 H 1.09002 * 113.61445 * 89.11830 * 13 12 11 40 40 H 0.96995 * 120.00146 * 23.47603 * 14 13 12 41 41 H 0.96996 * 120.00281 * 179.97438 * 18 17 15 42 42 H 1.08992 * 113.61675 * 140.02412 * 23 13 12 43 43 H 1.09000 * 113.60973 * 270.92699 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1560 -0.0193 -1.4423 5 6 4.6860 -0.0179 -1.4423 6 6 5.1960 -0.0372 -2.8847 7 6 6.7030 -0.0366 -2.8847 8 8 7.3094 -0.0225 -1.8345 9 7 7.3769 -0.0526 -4.0518 10 6 8.8419 -0.0525 -4.0518 11 6 9.3519 -0.0716 -5.4942 12 6 10.8806 0.0497 -5.6087 13 6 10.8007 -0.9964 -6.7330 14 7 11.8855 -1.9804 -6.6972 15 6 12.2402 -2.6502 -7.8377 16 1 11.7206 -2.4527 -8.7636 17 6 13.2684 -3.5821 -7.8039 18 7 13.9021 -3.8224 -6.6755 19 14 13.7529 -4.4953 -9.3598 20 1 14.1870 -3.5195 -10.3916 21 1 14.8687 -5.4279 -9.0593 22 1 12.5877 -5.2648 -9.8653 23 6 9.4997 -1.4896 -6.0778 24 1 -1.0500 0.0002 0.0000 25 1 3.0098 -0.8819 0.5262 26 1 3.0090 0.8978 0.5014 27 1 2.7923 0.8633 -1.9685 28 1 2.7931 -0.9165 -1.9437 29 1 5.0501 -0.9004 -0.9160 30 1 5.0486 0.8795 -0.9411 31 1 4.8319 0.8453 -3.4107 32 1 4.8334 -0.9345 -3.3864 33 1 6.8919 -0.0641 -4.8918 34 1 9.2052 -0.9353 -3.5259 35 1 9.2052 0.8445 -3.5502 36 1 8.8095 0.6151 -6.1440 37 1 11.4138 -0.2994 -4.7245 38 1 11.2167 1.0298 -5.9474 39 1 10.6544 -0.5636 -7.7226 40 1 12.3523 -2.1575 -5.8656 41 1 14.6203 -4.4739 -6.6518 42 1 8.7217 -1.7515 -6.7949 43 1 9.6561 -2.2589 -5.3216 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100259882.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:36 Heat of formation + Delta-G solvation = -2.122547 kcal Electronic energy + Delta-G solvation = -20071.929440 eV Core-core repulsion = 16924.626241 eV Total energy + Delta-G solvation = -3147.303199 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.88111 -39.78233 -37.04443 -36.00329 -34.96466 -34.06878 -32.21673 -30.93491 -28.66423 -26.45355 -26.18932 -25.33692 -22.56530 -22.15475 -21.33993 -20.40638 -19.05394 -18.88541 -17.89514 -17.18303 -17.03180 -16.55288 -16.24968 -15.89110 -15.49258 -15.12898 -15.07105 -14.78458 -14.59259 -13.95811 -13.77367 -13.40833 -13.23389 -13.01383 -12.89750 -12.68809 -12.61967 -12.50363 -12.23821 -12.15616 -12.07667 -11.58229 -11.57453 -11.54528 -11.13467 -11.06842 -10.96040 -10.83101 -10.69237 -10.01734 -8.97161 -7.93880 -5.22446 1.47620 1.50722 1.56872 1.71823 1.89661 1.94233 2.30177 2.57476 3.37810 3.50606 3.70619 3.76863 3.84807 3.93766 4.06395 4.07517 4.26788 4.35717 4.43177 4.45342 4.46193 4.57675 4.66354 4.76688 4.81548 4.89824 4.93721 4.98452 5.00165 5.07377 5.12508 5.23083 5.23640 5.36182 5.38406 5.44591 5.49897 5.55660 5.75056 6.28142 6.64769 6.73486 7.33551 7.34502 8.12261 8.33864 9.29405 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.037397 B = 0.002085 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.548394 B =13424.394072 C =13681.584867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.216 4.216 3 C -0.019 4.019 4 C -0.103 4.103 5 C -0.102 4.102 6 C -0.132 4.132 7 C 0.502 3.498 8 O -0.595 6.595 9 N -0.717 5.717 10 C 0.137 3.863 11 C -0.094 4.094 12 C -0.138 4.138 13 C 0.142 3.858 14 N -0.731 5.731 15 C -0.245 4.245 16 H 0.080 0.920 17 C -0.080 4.080 18 N -0.972 5.972 19 Si 0.974 3.026 20 H -0.276 1.276 21 H -0.298 1.298 22 H -0.278 1.278 23 C -0.152 4.152 24 H 0.241 0.759 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.121 0.879 32 H 0.114 0.886 33 H 0.417 0.583 34 H 0.042 0.958 35 H 0.062 0.938 36 H 0.123 0.877 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.371 0.629 41 H 0.250 0.750 42 H 0.069 0.931 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.529 11.460 7.275 28.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.216 4.216 3 C -0.056 4.056 4 C -0.141 4.141 5 C -0.140 4.140 6 C -0.172 4.172 7 C 0.290 3.710 8 O -0.476 6.476 9 N -0.369 5.369 10 C 0.013 3.987 11 C -0.113 4.113 12 C -0.177 4.177 13 C 0.032 3.968 14 N -0.368 5.368 15 C -0.376 4.376 16 H 0.098 0.902 17 C -0.272 4.272 18 N -0.623 5.623 19 Si 0.803 3.197 20 H -0.202 1.202 21 H -0.225 1.225 22 H -0.204 1.204 23 C -0.193 4.193 24 H 0.257 0.743 25 H 0.107 0.893 26 H 0.110 0.890 27 H 0.094 0.906 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.139 0.861 32 H 0.132 0.868 33 H 0.254 0.746 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.141 0.859 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.203 0.797 41 H 0.059 0.941 42 H 0.087 0.913 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -25.053 11.410 7.799 28.612 hybrid contribution 0.670 -0.943 -0.503 1.261 sum -24.383 10.467 7.296 27.520 Atomic orbital electron populations 1.25695 0.96968 1.00668 1.00022 1.23735 0.95554 1.01017 1.01273 1.18835 0.84038 1.03939 0.98744 1.21456 0.94015 1.03352 0.95268 1.21287 0.94763 1.02694 0.95256 1.21720 0.88616 1.06748 1.00095 1.21505 0.91919 0.74582 0.82980 1.90692 1.71917 1.51808 1.33135 1.45985 1.06982 1.74562 1.09350 1.21175 0.80171 1.00768 0.96631 1.22510 0.95962 0.97940 0.94838 1.23316 0.95506 0.99837 0.99048 1.21980 0.87896 0.89865 0.97025 1.42634 1.39497 1.45713 1.08989 1.19715 1.12597 1.15167 0.90168 0.90241 1.25610 0.99644 1.01835 1.00062 1.69823 1.26839 1.38681 1.26963 0.85197 0.77213 0.78134 0.79129 1.20210 1.22460 1.20363 1.23756 0.99773 0.95831 0.99950 0.74262 0.89310 0.89020 0.90650 0.91031 0.92526 0.92016 0.86089 0.86754 0.74612 0.93995 0.91989 0.85883 0.91680 0.90279 0.90111 0.79723 0.94137 0.91250 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.86 19.25 74.32 1.43 -1.43 16 2 C -0.22 -3.32 13.34 31.13 0.42 -2.91 16 3 C -0.02 -0.24 5.70 28.79 0.16 -0.07 16 4 C -0.10 -1.11 5.17 30.59 0.16 -0.95 16 5 C -0.10 -1.44 4.50 30.60 0.14 -1.30 16 6 C -0.13 -1.62 5.70 29.85 0.17 -1.45 16 7 C 0.50 10.93 7.83 87.66 0.69 11.62 16 8 O -0.59 -18.98 15.98 -3.04 -0.05 -19.03 16 9 N -0.72 -13.68 5.56 -463.06 -2.57 -16.26 16 10 C 0.14 3.37 5.51 86.38 0.48 3.84 16 11 C -0.09 -2.21 3.76 -10.18 -0.04 -2.25 16 12 C -0.14 -4.17 7.39 31.12 0.23 -3.94 16 13 C 0.14 5.30 4.47 45.52 0.20 5.50 16 14 N -0.73 -36.87 5.41 -320.44 -1.73 -38.60 16 15 C -0.24 -13.54 9.97 84.03 0.84 -12.70 16 16 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 17 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 18 N -0.97 -60.29 13.06 21.65 0.28 -60.00 16 19 Si 0.97 46.08 29.55 68.60 2.03 48.10 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 C -0.15 -4.76 7.45 31.21 0.23 -4.53 16 24 H 0.24 1.43 7.80 -4.42 -0.03 1.40 16 25 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 0.99 8.10 -2.38 -0.02 0.97 16 30 H 0.06 1.01 8.10 -2.39 -0.02 0.99 16 31 H 0.12 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.42 5.12 8.47 -92.71 -0.79 4.34 16 34 H 0.04 1.28 7.85 -2.39 -0.02 1.26 16 35 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.06 2.19 8.07 -2.39 -0.02 2.17 16 38 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.08 2.91 8.11 -2.39 -0.02 2.89 16 40 H 0.37 20.42 7.91 -92.71 -0.73 19.69 16 41 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 42 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.05 1.95 7.90 -2.39 -0.02 1.93 16 Total: -1.00 -73.67 366.30 2.99 -70.68 By element: Atomic # 1 Polarization: 30.33 SS G_CDS: -0.54 Total: 29.80 kcal Atomic # 6 Polarization: -20.26 SS G_CDS: 5.57 Total: -14.69 kcal Atomic # 7 Polarization: -110.84 SS G_CDS: -4.02 Total: -114.86 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.05 Total: -19.03 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.10 kcal Total: -73.67 2.99 -70.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100259882.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.556 kcal (2) G-P(sol) polarization free energy of solvation -73.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds