Wall clock time and date at job start Tue Mar 31 2020 00:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47299 * 2 1 4 4 C 1.52996 * 109.47164 * 239.99550 * 2 1 3 5 5 C 1.47203 * 109.46604 * 119.99893 * 2 1 3 6 6 C 2.64606 * 109.46602 * 119.99737 * 2 1 3 7 7 C 4.07805 * 109.46556 * 119.99759 * 2 1 3 8 8 O 1.21611 * 120.00160 * 297.39430 * 7 6 5 9 9 N 1.34772 * 119.99745 * 117.38442 * 7 6 5 10 10 C 1.46500 * 120.00059 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47425 * 180.02562 * 10 9 7 12 12 C 1.53781 * 113.61609 * 175.00005 * 11 10 9 13 13 C 1.53781 * 87.08070 * 139.98229 * 12 11 10 14 14 N 1.46497 * 113.61305 * 219.93536 * 13 12 11 15 15 C 1.36944 * 119.99791 * 203.46713 * 14 13 12 16 16 H 1.07993 * 120.00042 * 0.02562 * 15 14 13 17 17 C 1.38812 * 119.99770 * 179.97438 * 15 14 13 18 18 N 1.31624 * 120.00274 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99962 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46726 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47021 * 120.00168 * 19 17 15 22 22 H 1.48502 * 109.47101 * 240.00261 * 19 17 15 23 23 C 1.53786 * 87.17350 * 334.52830 * 13 12 11 24 24 H 1.08995 * 109.47175 * 300.00551 * 1 2 3 25 25 H 1.09009 * 109.46567 * 60.00385 * 1 2 3 26 26 H 1.09000 * 109.47420 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46722 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47112 * 299.99321 * 3 2 1 29 29 H 1.09006 * 109.46958 * 59.99627 * 3 2 1 30 30 H 1.08997 * 109.47063 * 300.00408 * 4 2 1 31 31 H 1.08995 * 109.47293 * 60.00650 * 4 2 1 32 32 H 1.09005 * 109.47076 * 180.02562 * 4 2 1 33 33 H 0.96996 * 120.00586 * 0.02562 * 9 7 6 34 34 H 1.08997 * 109.47114 * 60.00231 * 10 9 7 35 35 H 1.09006 * 109.47306 * 300.00712 * 10 9 7 36 36 H 1.08996 * 112.84723 * 43.80825 * 11 10 9 37 37 H 1.08999 * 113.61181 * 25.43284 * 12 11 10 38 38 H 1.08998 * 113.61680 * 254.52836 * 12 11 10 39 39 H 1.09002 * 113.61445 * 89.11830 * 13 12 11 40 40 H 0.96995 * 120.00146 * 23.47603 * 14 13 12 41 41 H 0.96996 * 120.00281 * 179.97438 * 18 17 15 42 42 H 1.08992 * 113.61675 * 140.02412 * 23 13 12 43 43 H 1.09000 * 113.60973 * 270.92699 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0206 -0.6939 1.2020 6 6 2.4118 -1.2473 2.1606 7 6 2.8890 -1.9223 3.3299 8 8 2.2552 -1.8652 4.3662 9 7 4.0404 -2.6211 3.2818 10 6 4.5289 -3.3113 4.4782 11 6 5.8447 -4.0223 4.1553 12 6 6.5065 -4.6787 5.3785 13 6 6.8599 -5.8574 4.4562 14 7 6.7035 -7.1677 5.0925 15 6 7.4021 -8.2463 4.6194 16 1 8.0686 -8.1310 3.7776 17 6 7.2543 -9.4878 5.2226 18 7 6.4423 -9.6283 6.2490 19 14 8.2078 -10.9590 4.5778 20 1 9.0447 -10.5397 3.4249 21 1 9.0795 -11.4944 5.6543 22 1 7.2567 -12.0125 4.1411 23 6 5.6561 -5.4441 3.5930 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6769 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -1.7489 -1.2491 31 1 1.6768 -0.2075 -2.1391 32 1 3.1301 -0.7217 -1.2489 33 1 4.5461 -2.6665 2.4554 34 1 3.7898 -4.0438 4.8024 35 1 4.6944 -2.5854 5.2743 36 1 6.5258 -3.4061 3.5686 37 1 5.8024 -4.9386 6.1689 38 1 7.3772 -4.1366 5.7473 39 1 7.8190 -5.7441 3.9508 40 1 6.1050 -7.2713 5.8487 41 1 6.3388 -10.4959 6.6703 42 1 5.8408 -5.5194 2.5215 43 1 4.7200 -5.9129 3.8963 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100315791.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:40 Heat of formation + Delta-G solvation = 25.463235 kcal Electronic energy + Delta-G solvation = -20283.182676 eV Core-core repulsion = 17137.075686 eV Total energy + Delta-G solvation = -3146.106989 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.82158 -38.45015 -37.89315 -34.74193 -33.33860 -32.45573 -30.27022 -27.78182 -27.76665 -27.66075 -25.10776 -24.33580 -23.34426 -21.15410 -21.04481 -19.28673 -18.36789 -17.04558 -16.33076 -16.20188 -15.51776 -15.01513 -14.78791 -14.73706 -14.60449 -14.16020 -13.57004 -13.39400 -12.99359 -12.91823 -12.87239 -12.21564 -12.17310 -11.96256 -11.84379 -11.74815 -11.70319 -11.40256 -11.26369 -10.87998 -10.78084 -10.54510 -10.50343 -10.32971 -10.15471 -10.05250 -9.83399 -9.52173 -9.11102 -8.87973 -6.96820 -5.78878 -3.07812 1.42181 2.09463 2.95343 3.40032 3.41982 3.47431 3.49905 3.90721 4.43601 4.45929 4.54079 4.57650 4.90804 4.94156 5.08973 5.13191 5.14436 5.21390 5.27653 5.37372 5.37627 5.45765 5.48252 5.55211 5.62308 5.78563 5.79369 5.79688 5.83283 5.91393 6.08132 6.19643 6.28779 6.34465 6.40591 6.58286 6.80896 7.00573 7.10387 7.34909 7.69012 8.02901 8.39689 9.50775 10.09087 10.43206 11.43553 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027552 B = 0.002463 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.006830 B =11366.323035 C =11795.605257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.036 3.964 3 C -0.141 4.141 4 C -0.142 4.142 5 C -0.074 4.074 6 C -0.218 4.218 7 C 0.629 3.371 8 O -0.527 6.527 9 N -0.711 5.711 10 C 0.131 3.869 11 C -0.128 4.128 12 C -0.141 4.141 13 C 0.166 3.834 14 N -0.713 5.713 15 C -0.243 4.243 16 H 0.072 0.928 17 C -0.014 4.014 18 N -0.932 5.932 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C -0.161 4.161 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.404 0.596 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.054 0.946 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.767 21.898 -14.203 27.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.036 3.964 3 C -0.199 4.199 4 C -0.199 4.199 5 C -0.076 4.076 6 C -0.221 4.221 7 C 0.415 3.585 8 O -0.404 6.404 9 N -0.361 5.361 10 C 0.009 3.991 11 C -0.147 4.147 12 C -0.181 4.181 13 C 0.053 3.947 14 N -0.351 5.351 15 C -0.374 4.374 16 H 0.089 0.911 17 C -0.210 4.210 18 N -0.580 5.580 19 Si 0.738 3.262 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.219 1.219 23 C -0.203 4.203 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.238 0.762 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.220 0.780 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.066 21.741 -13.489 26.827 hybrid contribution 0.479 -0.940 -0.430 1.140 sum -7.586 20.800 -13.919 26.153 Atomic orbital electron populations 1.21917 0.92266 1.02988 1.02823 1.17946 0.96083 0.94400 0.87935 1.21902 1.01761 0.93331 1.02863 1.21912 1.01808 1.00744 0.95464 1.22505 0.96506 0.94440 0.94175 1.20804 1.03146 1.02502 0.95678 1.14716 0.81007 0.78322 0.84470 1.90864 1.57077 1.61864 1.30639 1.45909 1.23425 1.51340 1.15441 1.21547 0.95657 0.95735 0.86180 1.22704 0.95267 0.96368 1.00391 1.23425 0.99884 0.98171 0.96581 1.21519 0.95320 0.85265 0.92549 1.42423 1.52089 1.03339 1.37278 1.19341 1.18940 0.87751 1.11402 0.91051 1.24781 1.00084 0.97860 0.98285 1.69671 1.40402 1.23585 1.24321 0.86119 0.79126 0.83043 0.77901 1.20543 1.21842 1.21857 1.24010 1.02691 0.93606 0.99950 0.91852 0.91147 0.91854 0.91891 0.91087 0.91903 0.91824 0.91123 0.91833 0.76189 0.90754 0.91302 0.89263 0.89998 0.91896 0.90729 0.78050 0.93489 0.92730 0.90261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 8.43 37.16 0.31 -0.55 16 2 C 0.04 0.25 0.95 -157.29 -0.15 0.10 16 3 C -0.14 -0.78 8.43 37.16 0.31 -0.47 16 4 C -0.14 -0.79 8.43 37.16 0.31 -0.48 16 5 C -0.07 -0.76 11.77 -37.12 -0.44 -1.20 16 6 C -0.22 -2.74 13.61 -38.84 -0.53 -3.26 16 7 C 0.63 9.06 7.65 -14.34 -0.11 8.95 16 8 O -0.53 -9.57 17.08 5.27 0.09 -9.48 16 9 N -0.71 -8.63 5.55 -62.77 -0.35 -8.98 16 10 C 0.13 1.74 5.51 -4.04 -0.02 1.72 16 11 C -0.13 -1.69 3.76 -89.67 -0.34 -2.03 16 12 C -0.14 -2.21 7.39 -25.92 -0.19 -2.40 16 13 C 0.17 3.17 4.47 -67.12 -0.30 2.87 16 14 N -0.71 -17.75 5.41 -52.64 -0.28 -18.04 16 15 C -0.24 -6.72 9.97 -15.06 -0.15 -6.87 16 16 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 17 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 18 N -0.93 -28.20 13.06 55.49 0.72 -27.48 16 19 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 C -0.16 -2.65 7.45 -25.77 -0.19 -2.84 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.29 8.14 -51.92 -0.42 -0.13 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.40 3.91 8.44 -40.82 -0.34 3.57 16 34 H 0.07 1.11 7.85 -51.93 -0.41 0.70 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.07 1.41 8.11 -51.93 -0.42 0.99 16 40 H 0.39 10.23 7.91 -40.82 -0.32 9.90 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.08 1.44 7.90 -51.93 -0.41 1.03 16 LS Contribution 365.55 15.07 5.51 5.51 Total: -1.00 -32.67 365.55 -8.27 -40.94 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -7.37 Total: 7.19 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -1.57 Total: -6.96 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: 0.09 Total: -54.49 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.67 -8.27 -40.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100315791.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.408 kcal (2) G-P(sol) polarization free energy of solvation -32.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds