Wall clock time and date at job start Tue Mar 31 2020 00:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47299 * 2 1 4 4 C 1.52996 * 109.47164 * 239.99550 * 2 1 3 5 5 C 1.47203 * 109.46604 * 119.99893 * 2 1 3 6 6 C 2.64606 * 109.46602 * 119.99737 * 2 1 3 7 7 C 4.07805 * 109.46556 * 119.99759 * 2 1 3 8 8 O 1.21611 * 120.00160 * 297.39430 * 7 6 5 9 9 N 1.34772 * 119.99745 * 117.38442 * 7 6 5 10 10 C 1.46500 * 120.00059 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47425 * 180.02562 * 10 9 7 12 12 C 1.53781 * 113.61609 * 175.00005 * 11 10 9 13 13 C 1.53781 * 87.08070 * 139.98229 * 12 11 10 14 14 N 1.46497 * 113.61305 * 219.93536 * 13 12 11 15 15 C 1.36944 * 119.99791 * 203.46713 * 14 13 12 16 16 H 1.07993 * 120.00042 * 0.02562 * 15 14 13 17 17 C 1.38812 * 119.99770 * 179.97438 * 15 14 13 18 18 N 1.31624 * 120.00274 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99962 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46726 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47021 * 120.00168 * 19 17 15 22 22 H 1.48502 * 109.47101 * 240.00261 * 19 17 15 23 23 C 1.53786 * 87.17350 * 334.52830 * 13 12 11 24 24 H 1.08995 * 109.47175 * 300.00551 * 1 2 3 25 25 H 1.09009 * 109.46567 * 60.00385 * 1 2 3 26 26 H 1.09000 * 109.47420 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46722 * 179.97438 * 3 2 1 28 28 H 1.08995 * 109.47112 * 299.99321 * 3 2 1 29 29 H 1.09006 * 109.46958 * 59.99627 * 3 2 1 30 30 H 1.08997 * 109.47063 * 300.00408 * 4 2 1 31 31 H 1.08995 * 109.47293 * 60.00650 * 4 2 1 32 32 H 1.09005 * 109.47076 * 180.02562 * 4 2 1 33 33 H 0.96996 * 120.00586 * 0.02562 * 9 7 6 34 34 H 1.08997 * 109.47114 * 60.00231 * 10 9 7 35 35 H 1.09006 * 109.47306 * 300.00712 * 10 9 7 36 36 H 1.08996 * 112.84723 * 43.80825 * 11 10 9 37 37 H 1.08999 * 113.61181 * 25.43284 * 12 11 10 38 38 H 1.08998 * 113.61680 * 254.52836 * 12 11 10 39 39 H 1.09002 * 113.61445 * 89.11830 * 13 12 11 40 40 H 0.96995 * 120.00146 * 23.47603 * 14 13 12 41 41 H 0.96996 * 120.00281 * 179.97438 * 18 17 15 42 42 H 1.08992 * 113.61675 * 140.02412 * 23 13 12 43 43 H 1.09000 * 113.60973 * 270.92699 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0206 -0.6939 1.2020 6 6 2.4118 -1.2473 2.1606 7 6 2.8890 -1.9223 3.3299 8 8 2.2552 -1.8652 4.3662 9 7 4.0404 -2.6211 3.2818 10 6 4.5289 -3.3113 4.4782 11 6 5.8447 -4.0223 4.1553 12 6 6.5065 -4.6787 5.3785 13 6 6.8599 -5.8574 4.4562 14 7 6.7035 -7.1677 5.0925 15 6 7.4021 -8.2463 4.6194 16 1 8.0686 -8.1310 3.7776 17 6 7.2543 -9.4878 5.2226 18 7 6.4423 -9.6283 6.2490 19 14 8.2078 -10.9590 4.5778 20 1 9.0447 -10.5397 3.4249 21 1 9.0795 -11.4944 5.6543 22 1 7.2567 -12.0125 4.1411 23 6 5.6561 -5.4441 3.5930 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6769 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -1.7489 -1.2491 31 1 1.6768 -0.2075 -2.1391 32 1 3.1301 -0.7217 -1.2489 33 1 4.5461 -2.6665 2.4554 34 1 3.7898 -4.0438 4.8024 35 1 4.6944 -2.5854 5.2743 36 1 6.5258 -3.4061 3.5686 37 1 5.8024 -4.9386 6.1689 38 1 7.3772 -4.1366 5.7473 39 1 7.8190 -5.7441 3.9508 40 1 6.1050 -7.2713 5.8487 41 1 6.3388 -10.4959 6.6703 42 1 5.8408 -5.5194 2.5215 43 1 4.7200 -5.9129 3.8963 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100315791.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:39 Heat of formation + Delta-G solvation = 4.565246 kcal Electronic energy + Delta-G solvation = -20284.088880 eV Core-core repulsion = 17137.075686 eV Total energy + Delta-G solvation = -3147.013194 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.98808 -39.79476 -38.47844 -36.13613 -35.08583 -33.37179 -32.14593 -28.98295 -28.21342 -28.18990 -26.46595 -26.04452 -24.58560 -22.45889 -21.92661 -20.65072 -19.52137 -18.95473 -17.46503 -16.99703 -16.63691 -16.61439 -16.09901 -15.66088 -15.24867 -15.22870 -15.13851 -14.87966 -14.50174 -13.47571 -13.35194 -13.31804 -13.23913 -13.05805 -12.94102 -12.76053 -12.67859 -12.61791 -12.33224 -12.26299 -12.17517 -12.06367 -11.80920 -11.57270 -11.39377 -11.33414 -11.25249 -11.05938 -10.82649 -10.22838 -8.97680 -7.94618 -5.22974 0.43936 1.20740 1.47273 1.48029 1.58072 1.97635 2.40536 2.56615 3.08825 3.37576 3.69154 3.71516 3.88893 3.94611 3.95935 3.99177 4.24921 4.27692 4.35977 4.41522 4.54096 4.72754 4.73843 4.75123 4.83847 4.95726 4.96156 4.96367 4.98336 5.03314 5.06811 5.17548 5.20157 5.26758 5.34967 5.37045 5.39451 5.52290 5.72188 6.14121 6.27938 6.33847 6.98191 7.33290 8.11824 8.33278 9.29132 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027552 B = 0.002463 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.006830 B =11366.323035 C =11795.605257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.030 3.970 3 C -0.140 4.140 4 C -0.141 4.141 5 C -0.038 4.038 6 C -0.269 4.269 7 C 0.629 3.371 8 O -0.575 6.575 9 N -0.696 5.696 10 C 0.136 3.864 11 C -0.096 4.096 12 C -0.134 4.134 13 C 0.143 3.857 14 N -0.731 5.731 15 C -0.240 4.240 16 H 0.080 0.920 17 C -0.082 4.082 18 N -0.973 5.973 19 Si 0.973 3.027 20 H -0.263 1.263 21 H -0.294 1.294 22 H -0.296 1.296 23 C -0.156 4.156 24 H 0.055 0.945 25 H 0.096 0.904 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.095 0.905 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.418 0.582 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.124 0.876 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.372 0.628 41 H 0.250 0.750 42 H 0.067 0.933 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.053 23.847 -16.985 30.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.030 3.970 3 C -0.197 4.197 4 C -0.198 4.198 5 C -0.041 4.041 6 C -0.272 4.272 7 C 0.417 3.583 8 O -0.457 6.457 9 N -0.346 5.346 10 C 0.013 3.987 11 C -0.115 4.115 12 C -0.174 4.174 13 C 0.034 3.966 14 N -0.368 5.368 15 C -0.372 4.372 16 H 0.098 0.902 17 C -0.274 4.274 18 N -0.624 5.624 19 Si 0.802 3.198 20 H -0.187 1.187 21 H -0.222 1.222 22 H -0.223 1.223 23 C -0.196 4.196 24 H 0.074 0.926 25 H 0.115 0.885 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.114 0.886 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.113 0.887 32 H 0.083 0.917 33 H 0.255 0.745 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.142 0.858 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.204 0.796 41 H 0.059 0.941 42 H 0.086 0.914 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.309 23.738 -16.342 29.732 hybrid contribution 0.233 -1.432 0.340 1.490 sum -7.076 22.307 -16.002 28.350 Atomic orbital electron populations 1.21952 0.91467 1.02824 1.03794 1.18316 0.96698 0.95126 0.86900 1.21925 1.01809 0.92171 1.03792 1.21933 1.01902 1.00466 0.95463 1.23378 0.94273 0.92475 0.93973 1.20600 1.05496 1.04568 0.96491 1.14928 0.80923 0.77997 0.84433 1.90828 1.58518 1.63787 1.32521 1.45748 1.22908 1.50261 1.15705 1.21396 0.95076 0.95439 0.86809 1.22533 0.95395 0.94864 0.98671 1.23307 1.00526 0.96857 0.96694 1.21958 0.96621 0.83880 0.94168 1.42652 1.51797 1.04995 1.37372 1.19766 1.18022 0.88590 1.10776 0.90244 1.25613 1.01807 1.00804 0.99127 1.69833 1.42638 1.23763 1.26120 0.85070 0.77699 0.79414 0.77573 1.18722 1.22180 1.22330 1.23800 1.00087 0.95480 1.00254 0.92629 0.88498 0.92621 0.91877 0.88591 0.92613 0.92528 0.88735 0.91745 0.74476 0.92865 0.90791 0.85832 0.91309 0.89995 0.90061 0.79645 0.94134 0.91387 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.43 71.98 0.61 -0.82 16 2 C 0.03 0.34 0.95 -53.99 -0.05 0.29 16 3 C -0.14 -1.17 8.43 71.98 0.61 -0.56 16 4 C -0.14 -1.17 8.43 71.98 0.61 -0.56 16 5 C -0.04 -0.75 11.77 31.13 0.37 -0.38 16 6 C -0.27 -6.66 13.61 30.01 0.41 -6.25 16 7 C 0.63 18.27 7.65 85.49 0.65 18.92 16 8 O -0.58 -21.57 17.08 -4.07 -0.07 -21.64 16 9 N -0.70 -16.20 5.55 -470.74 -2.61 -18.81 16 10 C 0.14 3.48 5.51 86.38 0.48 3.95 16 11 C -0.10 -2.31 3.76 -10.18 -0.04 -2.35 16 12 C -0.13 -4.04 7.39 31.12 0.23 -3.81 16 13 C 0.14 5.35 4.47 45.52 0.20 5.56 16 14 N -0.73 -36.80 5.41 -320.44 -1.73 -38.53 16 15 C -0.24 -13.26 9.97 84.03 0.84 -12.42 16 16 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 17 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 18 N -0.97 -60.44 13.06 21.65 0.28 -60.16 16 19 Si 0.97 46.30 29.55 68.60 2.03 48.32 16 20 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 21 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 22 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 23 C -0.16 -4.94 7.45 31.21 0.23 -4.70 16 24 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16 26 H 0.05 0.64 8.14 -2.39 -0.02 0.63 16 27 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.42 7.25 8.44 -92.71 -0.78 6.46 16 34 H 0.05 1.62 7.85 -2.39 -0.02 1.60 16 35 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 38 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.08 2.93 8.11 -2.39 -0.02 2.91 16 40 H 0.37 20.39 7.91 -92.71 -0.73 19.65 16 41 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 42 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.06 2.06 7.90 -2.39 -0.02 2.04 16 Total: -1.00 -72.81 365.55 2.99 -69.83 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: -0.52 Total: 28.39 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: 5.61 Total: -7.40 kcal Atomic # 7 Polarization: -113.44 SS G_CDS: -4.06 Total: -117.50 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.07 Total: -21.64 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.32 kcal Total: -72.81 2.99 -69.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100315791.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.394 kcal (2) G-P(sol) polarization free energy of solvation -72.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds