Wall clock time and date at job start Tue Mar 31 2020 00:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.47048 * 2 1 4 4 C 1.32994 * 120.00227 * 122.50324 * 3 2 1 5 5 C 1.50694 * 119.99870 * 186.12228 * 4 3 2 6 6 C 1.47105 * 119.99718 * 6.12613 * 4 3 2 7 7 O 1.21608 * 119.99554 * 255.86988 * 6 4 3 8 8 N 1.34771 * 120.00153 * 75.87569 * 6 4 3 9 9 C 1.46499 * 120.00349 * 180.02562 * 8 6 4 10 10 H 1.09000 * 110.56036 * 35.33037 * 9 8 6 11 11 C 1.54843 * 110.63066 * 158.23980 * 9 8 6 12 12 C 1.55848 * 103.44974 * 118.48738 * 11 9 8 13 13 H 1.09000 * 115.56201 * 158.81071 * 12 11 9 14 14 C 1.55844 * 105.06194 * 287.42218 * 12 11 9 15 15 C 1.56687 * 102.59648 * 72.29830 * 14 12 11 16 16 C 1.55837 * 103.60268 * 359.66550 * 15 14 12 17 17 H 1.09004 * 116.12929 * 159.37704 * 16 15 14 18 18 N 1.50239 * 101.05408 * 33.16653 * 16 15 14 19 19 C 1.36933 * 130.84063 * 126.00527 * 18 16 15 20 20 H 1.08005 * 120.00227 * 0.02562 * 19 18 16 21 21 C 1.38811 * 120.00266 * 180.02562 * 19 18 16 22 22 N 1.31625 * 119.99869 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00208 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47196 * 89.99788 * 23 21 19 25 25 H 1.48497 * 109.47017 * 210.00021 * 23 21 19 26 26 H 1.48500 * 109.47017 * 329.99989 * 23 21 19 27 27 H 1.08995 * 109.47463 * 299.99944 * 1 2 3 28 28 H 1.08999 * 109.46989 * 60.00194 * 1 2 3 29 29 H 1.08998 * 109.46902 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46930 * 239.99559 * 2 1 3 31 31 H 1.08999 * 109.46989 * 119.99806 * 2 1 3 32 32 H 1.08003 * 119.99706 * 302.50686 * 3 2 1 33 33 H 1.08999 * 109.47239 * 269.99738 * 5 4 3 34 34 H 1.09001 * 109.46673 * 150.00189 * 5 4 3 35 35 H 1.08996 * 109.47351 * 30.00355 * 5 4 3 36 36 H 0.97003 * 120.00211 * 359.97438 * 8 6 4 37 37 H 1.09007 * 110.62372 * 236.97686 * 11 9 8 38 38 H 1.08998 * 110.62899 * 359.83245 * 11 9 8 39 39 H 1.08996 * 110.62799 * 190.31140 * 14 12 11 40 40 H 1.09000 * 110.62751 * 313.33375 * 14 12 11 41 41 H 1.08999 * 110.35550 * 241.21437 * 15 14 12 42 42 H 1.09008 * 110.88402 * 118.36935 * 15 14 12 43 43 H 0.96998 * 119.99962 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8375 1.8415 0.9713 5 6 3.2288 3.2947 1.0492 6 6 3.3461 0.8882 1.9696 7 8 2.8734 0.8711 3.0899 8 7 4.3360 0.0340 1.6427 9 6 4.8421 -0.9157 2.6366 10 1 4.0341 -1.2629 3.2805 11 6 5.5392 -2.1117 1.9429 12 6 7.0062 -2.0271 2.4622 13 1 7.5818 -2.9506 2.3981 14 6 7.6243 -0.7974 1.7311 15 6 6.9212 0.4103 2.4397 16 6 5.9829 -0.2712 3.4806 17 1 5.6571 0.3519 4.3135 18 7 6.7908 -1.4839 3.8463 19 6 7.2043 -1.9501 5.0656 20 1 6.9462 -1.4116 5.9655 21 6 7.9551 -3.1150 5.1451 22 7 8.2701 -3.7711 4.0484 23 14 8.5184 -3.7514 6.8085 24 1 7.4912 -4.6707 7.3605 25 1 9.8021 -4.4810 6.6504 26 1 8.7098 -2.6082 7.7369 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.7384 2.0975 -0.7888 33 1 4.1395 3.4571 0.4727 34 1 3.4037 3.5685 2.0896 35 1 2.4263 3.9094 0.6417 36 1 4.7128 0.0476 0.7489 37 1 5.0786 -3.0524 2.2449 38 1 5.5058 -1.9998 0.8592 39 1 8.7023 -0.7596 1.8875 40 1 7.3905 -0.8260 0.6668 41 1 6.3411 0.9871 1.7193 42 1 7.6518 1.0463 2.9397 43 1 8.7950 -4.5848 4.1039 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109016665.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:12 Heat of formation + Delta-G solvation = 14.842402 kcal Electronic energy + Delta-G solvation = -22636.673403 eV Core-core repulsion = 19490.105860 eV Total energy + Delta-G solvation = -3146.567543 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.10281 -38.49735 -35.71253 -33.81219 -32.37337 -32.16299 -29.19597 -29.01940 -27.68968 -26.98674 -24.35854 -23.19592 -22.07547 -21.19942 -19.67227 -18.95234 -18.46272 -16.94130 -16.34014 -15.59304 -15.36666 -14.87014 -14.54279 -14.22786 -14.01290 -13.80113 -13.35450 -13.01295 -12.92856 -12.53541 -12.25906 -12.19839 -12.08208 -11.72404 -11.47171 -11.17517 -11.09921 -11.02647 -10.89760 -10.87728 -10.81487 -10.22946 -10.08321 -9.82768 -9.62845 -9.36389 -9.22405 -8.98729 -8.92211 -8.47745 -6.90126 -5.71642 -3.09657 1.69545 2.91047 3.40748 3.45733 3.47199 3.59063 4.46424 4.60781 4.85863 4.99133 5.17835 5.23294 5.29340 5.32814 5.40117 5.49903 5.53592 5.64111 5.70033 5.82092 5.83122 5.86665 5.94011 5.98375 6.04270 6.09097 6.13210 6.29462 6.32894 6.34343 6.51050 6.55638 6.61903 6.70886 6.82289 6.98232 7.01218 7.28360 7.53527 7.76023 7.87804 8.18069 8.53122 9.11633 9.74124 10.54715 11.37901 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027513 B = 0.004435 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.457471 B = 6311.710067 C = 6434.990814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C -0.121 4.121 4 C -0.160 4.160 5 C -0.105 4.105 6 C 0.551 3.449 7 O -0.542 6.542 8 N -0.705 5.705 9 C 0.126 3.874 10 H 0.082 0.918 11 C -0.141 4.141 12 C 0.154 3.846 13 H 0.154 0.846 14 C -0.137 4.137 15 C -0.130 4.130 16 C 0.128 3.872 17 H 0.085 0.915 18 N -0.589 5.589 19 C -0.209 4.209 20 H 0.079 0.921 21 C -0.012 4.012 22 N -0.924 5.924 23 Si 0.917 3.083 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.122 0.878 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.396 0.604 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.047 0.953 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.552 9.207 -12.163 17.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.144 4.144 3 C -0.140 4.140 4 C -0.163 4.163 5 C -0.162 4.162 6 C 0.337 3.663 7 O -0.420 6.420 8 N -0.356 5.356 9 C 0.020 3.980 10 H 0.100 0.900 11 C -0.180 4.180 12 C 0.047 3.953 13 H 0.170 0.830 14 C -0.177 4.177 15 C -0.169 4.169 16 C 0.019 3.981 17 H 0.103 0.897 18 N -0.310 5.310 19 C -0.337 4.337 20 H 0.097 0.903 21 C -0.207 4.207 22 N -0.572 5.572 23 Si 0.747 3.253 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.208 1.208 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.140 0.860 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.230 0.770 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.709 8.950 -11.104 17.253 hybrid contribution 0.425 -0.212 0.349 0.589 sum -9.284 8.738 -10.755 16.680 Atomic orbital electron populations 1.21661 0.94646 1.01897 1.01916 1.20763 0.96593 0.93991 1.03017 1.23309 0.96743 0.97689 0.96273 1.21662 1.01553 0.96691 0.96402 1.20664 1.01676 0.90613 1.03226 1.18412 0.79614 0.80646 0.87614 1.90810 1.58800 1.70525 1.21832 1.46315 1.36660 1.36762 1.15814 1.22657 0.96522 0.89068 0.89709 0.90034 1.23299 1.00697 0.96546 0.97504 1.23715 0.91614 0.97677 0.82303 0.82971 1.23353 0.99830 0.97616 0.96891 1.23200 0.98436 0.97171 0.98113 1.23186 0.90719 0.90099 0.94076 0.89718 1.46459 1.58629 1.23621 1.02276 1.19071 1.26355 1.05090 0.83224 0.90314 1.24690 1.00955 0.97722 0.97373 1.69443 1.43464 1.18967 1.25355 0.86028 0.77826 0.78609 0.82799 1.21653 1.21691 1.20763 0.92484 0.92655 0.92363 0.90672 0.91044 0.86036 0.91068 0.91137 0.91307 0.76996 0.91681 0.92768 0.92657 0.93462 0.93106 0.93081 0.93597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.90 37.16 0.37 -0.96 16 2 C -0.11 -1.11 6.20 -27.88 -0.17 -1.28 16 3 C -0.12 -1.22 9.20 -36.13 -0.33 -1.55 16 4 C -0.16 -1.94 5.74 -102.85 -0.59 -2.53 16 5 C -0.10 -1.05 10.03 36.00 0.36 -0.68 16 6 C 0.55 8.80 5.27 -12.67 -0.07 8.73 16 7 O -0.54 -11.08 16.81 5.27 0.09 -10.99 16 8 N -0.71 -10.71 3.59 -52.58 -0.19 -10.90 16 9 C 0.13 2.39 3.10 -65.44 -0.20 2.19 16 10 H 0.08 1.75 7.65 -51.93 -0.40 1.35 16 11 C -0.14 -2.68 6.19 -24.24 -0.15 -2.83 16 12 C 0.15 3.46 4.67 -62.80 -0.29 3.17 16 13 H 0.15 3.92 5.52 -51.93 -0.29 3.63 16 14 C -0.14 -2.65 6.58 -23.22 -0.15 -2.80 16 15 C -0.13 -2.41 6.37 -23.23 -0.15 -2.56 16 16 C 0.13 2.73 5.35 -62.80 -0.34 2.39 16 17 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 18 N -0.59 -14.79 2.99 -145.81 -0.44 -15.22 16 19 C -0.21 -5.82 10.59 -15.06 -0.16 -5.98 16 20 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 22 N -0.92 -26.23 10.47 55.49 0.58 -25.65 16 23 Si 0.92 22.13 29.55 -169.99 -5.02 17.10 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.94 6.27 -51.93 -0.33 0.61 16 32 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.80 8.11 -51.93 -0.42 0.38 16 35 H 0.07 0.55 8.07 -51.93 -0.42 0.13 16 36 H 0.40 5.06 7.96 -40.82 -0.32 4.73 16 37 H 0.06 1.32 8.14 -51.92 -0.42 0.90 16 38 H 0.05 0.86 7.35 -51.93 -0.38 0.48 16 39 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.05 0.77 7.81 -51.93 -0.41 0.36 16 41 H 0.05 0.81 6.44 -51.93 -0.33 0.48 16 42 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 43 H 0.25 7.00 8.31 -40.82 -0.34 6.67 16 LS Contribution 342.07 15.07 5.15 5.15 Total: -1.00 -30.90 342.07 -8.87 -39.77 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -7.07 Total: 5.85 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -1.97 Total: -5.12 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: -0.04 Total: -51.77 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.90 -8.87 -39.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109016665.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.613 kcal (2) G-P(sol) polarization free energy of solvation -30.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds