Wall clock time and date at job start Tue Mar 31 2020 00:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.47048 * 2 1 4 4 C 1.32994 * 120.00227 * 122.50324 * 3 2 1 5 5 C 1.50694 * 119.99870 * 186.12228 * 4 3 2 6 6 C 1.47105 * 119.99718 * 6.12613 * 4 3 2 7 7 O 1.21608 * 119.99554 * 255.86988 * 6 4 3 8 8 N 1.34771 * 120.00153 * 75.87569 * 6 4 3 9 9 C 1.46499 * 120.00349 * 180.02562 * 8 6 4 10 10 H 1.09000 * 110.56036 * 35.33037 * 9 8 6 11 11 C 1.54843 * 110.63066 * 158.23980 * 9 8 6 12 12 C 1.55848 * 103.44974 * 118.48738 * 11 9 8 13 13 H 1.09000 * 115.56201 * 158.81071 * 12 11 9 14 14 C 1.55844 * 105.06194 * 287.42218 * 12 11 9 15 15 C 1.56687 * 102.59648 * 72.29830 * 14 12 11 16 16 C 1.55837 * 103.60268 * 359.66550 * 15 14 12 17 17 H 1.09004 * 116.12929 * 159.37704 * 16 15 14 18 18 N 1.50239 * 101.05408 * 33.16653 * 16 15 14 19 19 C 1.36933 * 130.84063 * 126.00527 * 18 16 15 20 20 H 1.08005 * 120.00227 * 0.02562 * 19 18 16 21 21 C 1.38811 * 120.00266 * 180.02562 * 19 18 16 22 22 N 1.31625 * 119.99869 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00208 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47196 * 89.99788 * 23 21 19 25 25 H 1.48497 * 109.47017 * 210.00021 * 23 21 19 26 26 H 1.48500 * 109.47017 * 329.99989 * 23 21 19 27 27 H 1.08995 * 109.47463 * 299.99944 * 1 2 3 28 28 H 1.08999 * 109.46989 * 60.00194 * 1 2 3 29 29 H 1.08998 * 109.46902 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46930 * 239.99559 * 2 1 3 31 31 H 1.08999 * 109.46989 * 119.99806 * 2 1 3 32 32 H 1.08003 * 119.99706 * 302.50686 * 3 2 1 33 33 H 1.08999 * 109.47239 * 269.99738 * 5 4 3 34 34 H 1.09001 * 109.46673 * 150.00189 * 5 4 3 35 35 H 1.08996 * 109.47351 * 30.00355 * 5 4 3 36 36 H 0.97003 * 120.00211 * 359.97438 * 8 6 4 37 37 H 1.09007 * 110.62372 * 236.97686 * 11 9 8 38 38 H 1.08998 * 110.62899 * 359.83245 * 11 9 8 39 39 H 1.08996 * 110.62799 * 190.31140 * 14 12 11 40 40 H 1.09000 * 110.62751 * 313.33375 * 14 12 11 41 41 H 1.08999 * 110.35550 * 241.21437 * 15 14 12 42 42 H 1.09008 * 110.88402 * 118.36935 * 15 14 12 43 43 H 0.96998 * 119.99962 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8375 1.8415 0.9713 5 6 3.2288 3.2947 1.0492 6 6 3.3461 0.8882 1.9696 7 8 2.8734 0.8711 3.0899 8 7 4.3360 0.0340 1.6427 9 6 4.8421 -0.9157 2.6366 10 1 4.0341 -1.2629 3.2805 11 6 5.5392 -2.1117 1.9429 12 6 7.0062 -2.0271 2.4622 13 1 7.5818 -2.9506 2.3981 14 6 7.6243 -0.7974 1.7311 15 6 6.9212 0.4103 2.4397 16 6 5.9829 -0.2712 3.4806 17 1 5.6571 0.3519 4.3135 18 7 6.7908 -1.4839 3.8463 19 6 7.2043 -1.9501 5.0656 20 1 6.9462 -1.4116 5.9655 21 6 7.9551 -3.1150 5.1451 22 7 8.2701 -3.7711 4.0484 23 14 8.5184 -3.7514 6.8085 24 1 7.4912 -4.6707 7.3605 25 1 9.8021 -4.4810 6.6504 26 1 8.7098 -2.6082 7.7369 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.7384 2.0975 -0.7888 33 1 4.1395 3.4571 0.4727 34 1 3.4037 3.5685 2.0896 35 1 2.4263 3.9094 0.6417 36 1 4.7128 0.0476 0.7489 37 1 5.0786 -3.0524 2.2449 38 1 5.5058 -1.9998 0.8592 39 1 8.7023 -0.7596 1.8875 40 1 7.3905 -0.8260 0.6668 41 1 6.3411 0.9871 1.7193 42 1 7.6518 1.0463 2.9397 43 1 8.7950 -4.5848 4.1039 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109016665.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:11 Heat of formation + Delta-G solvation = -3.455872 kcal Electronic energy + Delta-G solvation = -22637.466876 eV Core-core repulsion = 19490.105860 eV Total energy + Delta-G solvation = -3147.361016 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.55092 -39.97441 -36.69131 -35.42067 -34.14165 -33.07919 -30.97542 -30.69379 -29.28051 -27.80781 -26.23243 -24.39510 -23.05087 -22.66416 -21.44463 -20.30439 -20.01922 -18.81899 -17.53500 -16.86737 -16.82871 -16.47810 -16.12194 -15.71138 -15.37209 -14.95091 -14.33510 -14.07446 -14.04900 -13.79971 -13.68063 -13.47858 -13.28433 -13.19448 -12.90018 -12.87692 -12.79139 -12.61311 -12.39034 -12.01294 -11.97711 -11.92605 -11.86749 -11.56113 -11.22695 -11.06349 -10.80934 -10.80148 -10.00945 -9.83483 -8.87291 -7.80823 -5.20412 0.83598 1.45240 1.46637 1.54802 1.67524 2.30161 2.50885 3.32421 3.50211 3.73016 3.87626 3.98599 4.10664 4.14187 4.17427 4.35961 4.42205 4.45633 4.55160 4.59062 4.60133 4.68497 4.79635 4.81500 4.85217 4.95769 5.00821 5.04142 5.10448 5.12630 5.21238 5.23687 5.30240 5.31700 5.43670 5.49707 5.53478 5.70105 5.74369 5.87201 6.26189 6.62038 7.04396 7.29992 7.67507 8.53783 9.25913 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027513 B = 0.004435 C = 0.004350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.457471 B = 6311.710067 C = 6434.990814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C -0.092 4.092 4 C -0.185 4.185 5 C -0.100 4.100 6 C 0.552 3.448 7 O -0.596 6.596 8 N -0.690 5.690 9 C 0.145 3.855 10 H 0.048 0.952 11 C -0.125 4.125 12 C 0.138 3.862 13 H 0.121 0.879 14 C -0.125 4.125 15 C -0.115 4.115 16 C 0.117 3.883 17 H 0.062 0.938 18 N -0.618 5.618 19 C -0.228 4.228 20 H 0.069 0.931 21 C -0.061 4.061 22 N -0.943 5.943 23 Si 0.976 3.024 24 H -0.289 1.289 25 H -0.289 1.289 26 H -0.277 1.277 27 H 0.040 0.960 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.037 0.963 32 H 0.160 0.840 33 H 0.088 0.912 34 H 0.047 0.953 35 H 0.092 0.908 36 H 0.413 0.587 37 H 0.045 0.955 38 H 0.097 0.903 39 H 0.036 0.964 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.042 0.958 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.357 10.688 -15.204 21.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C -0.111 4.111 4 C -0.188 4.188 5 C -0.157 4.157 6 C 0.341 3.659 7 O -0.477 6.477 8 N -0.341 5.341 9 C 0.038 3.962 10 H 0.066 0.934 11 C -0.164 4.164 12 C 0.032 3.968 13 H 0.138 0.862 14 C -0.164 4.164 15 C -0.154 4.154 16 C 0.009 3.991 17 H 0.081 0.919 18 N -0.340 5.340 19 C -0.356 4.356 20 H 0.087 0.913 21 C -0.254 4.254 22 N -0.592 5.592 23 Si 0.805 3.195 24 H -0.216 1.216 25 H -0.215 1.215 26 H -0.202 1.202 27 H 0.060 0.940 28 H 0.098 0.902 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.056 0.944 32 H 0.177 0.823 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.111 0.889 36 H 0.251 0.749 37 H 0.063 0.937 38 H 0.115 0.885 39 H 0.055 0.945 40 H 0.109 0.891 41 H 0.104 0.896 42 H 0.061 0.939 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -10.518 10.461 -14.202 20.537 hybrid contribution 0.582 -0.687 1.275 1.561 sum -9.936 9.774 -12.927 19.010 Atomic orbital electron populations 1.21652 0.93734 1.02250 1.02329 1.20846 0.97425 0.94352 1.02376 1.23626 0.94010 0.97725 0.95696 1.21564 1.03939 0.96836 0.96469 1.20684 1.03442 0.89256 1.02323 1.19147 0.78662 0.80472 0.87639 1.90786 1.60375 1.71935 1.24597 1.46061 1.36564 1.35831 1.15693 1.22085 0.94622 0.89558 0.89929 0.93406 1.23124 0.97984 0.95527 0.99806 1.23651 0.93478 0.97786 0.81851 0.86202 1.23256 0.98457 0.95744 0.98933 1.23088 0.97738 0.96880 0.97690 1.23313 0.91854 0.89344 0.94563 0.91931 1.46712 1.59583 1.25164 1.02493 1.19299 1.26472 1.05426 0.84453 0.91273 1.25399 1.01488 0.98032 1.00461 1.69667 1.43919 1.18984 1.26662 0.85111 0.77114 0.77917 0.79379 1.21638 1.21545 1.20196 0.94046 0.90188 0.92211 0.88486 0.94439 0.82254 0.89327 0.93392 0.88926 0.74881 0.93654 0.88506 0.94477 0.89149 0.89605 0.93900 0.94077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.90 71.98 0.71 -1.54 16 2 C -0.11 -2.02 6.20 29.85 0.19 -1.83 16 3 C -0.09 -1.48 9.20 24.52 0.23 -1.25 16 4 C -0.19 -3.98 5.74 -18.70 -0.11 -4.09 16 5 C -0.10 -1.69 10.03 71.23 0.71 -0.98 16 6 C 0.55 17.18 5.27 86.57 0.46 17.64 16 7 O -0.60 -25.06 16.81 -4.06 -0.07 -25.13 16 8 N -0.69 -19.82 3.59 -438.52 -1.57 -21.39 16 9 C 0.15 5.54 3.10 46.61 0.14 5.68 16 10 H 0.05 2.16 7.65 -2.39 -0.02 2.14 16 11 C -0.12 -4.66 6.19 32.21 0.20 -4.46 16 12 C 0.14 6.26 4.67 46.23 0.22 6.47 16 13 H 0.12 6.33 5.52 -2.39 -0.01 6.31 16 14 C -0.12 -4.58 6.58 32.87 0.22 -4.36 16 15 C -0.11 -4.10 6.37 32.86 0.21 -3.89 16 16 C 0.12 5.10 5.35 46.23 0.25 5.34 16 17 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 18 N -0.62 -31.98 2.99 -615.23 -1.84 -33.82 16 19 C -0.23 -13.15 10.59 84.03 0.89 -12.26 16 20 H 0.07 3.98 7.83 -2.91 -0.02 3.95 16 21 C -0.06 -3.48 5.50 84.86 0.47 -3.01 16 22 N -0.94 -55.10 10.47 21.65 0.23 -54.87 16 23 Si 0.98 46.69 29.55 68.60 2.03 48.71 16 24 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 26 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 27 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.04 0.94 6.27 -2.39 -0.01 0.92 16 32 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 33 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.05 1.02 8.11 -2.39 -0.02 1.00 16 35 H 0.09 1.11 8.07 -2.39 -0.02 1.09 16 36 H 0.41 8.99 7.96 -92.71 -0.74 8.25 16 37 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 38 H 0.10 2.75 7.35 -2.39 -0.02 2.74 16 39 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.09 2.54 7.81 -2.39 -0.02 2.52 16 41 H 0.09 2.45 6.44 -2.39 -0.02 2.44 16 42 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 43 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -71.98 342.07 3.80 -68.18 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.25 Total: 20.85 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 4.78 Total: -2.53 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -3.19 Total: -110.08 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.07 Total: -25.13 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.71 kcal Total: -71.98 3.80 -68.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109016665.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.724 kcal (2) G-P(sol) polarization free energy of solvation -71.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds