Wall clock time and date at job start Tue Mar 31 2020 00:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50692 * 120.00196 * 2 1 4 4 C 1.50706 * 119.99713 * 180.02562 * 2 1 3 5 5 C 1.53005 * 109.46944 * 94.99787 * 4 2 1 6 6 C 1.50703 * 109.46636 * 179.97438 * 5 4 2 7 7 O 1.21274 * 120.00233 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99316 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99453 * 180.02562 * 8 6 5 10 10 H 1.09000 * 110.55813 * 33.05992 * 9 8 6 11 11 C 1.54854 * 110.62339 * 155.95714 * 9 8 6 12 12 C 1.55844 * 103.44617 * 118.64859 * 11 9 8 13 13 H 1.09005 * 115.56168 * 158.81010 * 12 11 9 14 14 C 1.55841 * 105.06269 * 288.17341 * 12 11 9 15 15 C 1.54854 * 103.44389 * 71.82493 * 14 12 11 16 16 C 1.55841 * 110.76436 * 270.06007 * 9 8 6 17 17 H 1.09001 * 115.56153 * 82.63117 * 16 9 8 18 18 N 1.50237 * 101.05105 * 208.50903 * 16 9 8 19 19 C 1.36938 * 130.83944 * 233.98462 * 18 16 9 20 20 H 1.07996 * 119.99532 * 0.02562 * 19 18 16 21 21 C 1.38814 * 119.99786 * 180.02562 * 19 18 16 22 22 N 1.31615 * 120.00099 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99654 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46976 * 90.00272 * 23 21 19 25 25 H 1.48494 * 109.47180 * 210.00030 * 23 21 19 26 26 H 1.48497 * 109.47416 * 330.00196 * 23 21 19 27 27 H 1.07995 * 119.99813 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.00135 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46786 * 270.00139 * 3 2 1 30 30 H 1.08995 * 109.47533 * 29.99716 * 3 2 1 31 31 H 1.09000 * 109.47325 * 150.00171 * 3 2 1 32 32 H 1.08995 * 109.47069 * 335.00085 * 4 2 1 33 33 H 1.09000 * 109.47096 * 214.99822 * 4 2 1 34 34 H 1.08995 * 109.46994 * 60.00252 * 5 4 2 35 35 H 1.09000 * 109.47253 * 299.99939 * 5 4 2 36 36 H 0.96999 * 120.00452 * 0.02562 * 8 6 5 37 37 H 1.08998 * 110.62411 * 237.13824 * 11 9 8 38 38 H 1.08995 * 110.62766 * 0.15689 * 11 9 8 39 39 H 1.09007 * 110.62512 * 190.30943 * 14 12 11 40 40 H 1.08997 * 110.62829 * 313.17320 * 14 12 11 41 41 H 1.09002 * 110.62596 * 241.50557 * 15 14 12 42 42 H 1.09001 * 110.62477 * 118.48789 * 15 14 12 43 43 H 0.97004 * 119.99959 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0635 -1.3052 -0.0006 5 6 2.4273 -1.6834 -1.4378 6 6 3.1813 -2.9882 -1.4383 7 8 3.4052 -3.5596 -0.3923 8 7 3.6059 -3.5206 -2.6014 9 6 4.3384 -4.7894 -2.6019 10 1 3.9852 -5.4356 -1.7983 11 6 4.2011 -5.4979 -3.9720 12 6 5.6702 -5.5823 -4.4852 13 1 5.8610 -6.3426 -5.2426 14 6 6.0495 -4.1204 -4.8696 15 6 6.1868 -3.4119 -3.4995 16 6 5.8718 -4.5422 -2.4738 17 1 6.2400 -4.3864 -1.4598 18 7 6.4181 -5.7433 -3.1921 19 6 7.3198 -6.6928 -2.7914 20 1 7.7578 -6.6396 -1.8057 21 6 7.6708 -7.7237 -3.6523 22 7 7.1373 -7.7882 -4.8537 23 14 8.9004 -9.0193 -3.1054 24 1 8.1794 -10.1422 -2.4539 25 1 9.6429 -9.5271 -4.2869 26 1 9.8563 -8.4187 -2.1407 27 1 -0.5399 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 2.2452 1.6196 -1.0278 30 1 1.4746 2.0647 0.5138 31 1 3.0160 1.1747 0.5138 32 1 1.4386 -2.0857 0.4333 33 1 2.9743 -1.1992 0.5889 34 1 3.0523 -0.9029 -1.8718 35 1 1.5166 -1.7893 -2.0273 36 1 3.4265 -3.0638 -3.4381 37 1 3.7799 -6.4955 -3.8479 38 1 3.5904 -4.9040 -4.6519 39 1 6.9962 -4.0987 -5.4096 40 1 5.2591 -3.6623 -5.4641 41 1 5.4632 -2.6014 -3.4121 42 1 7.2014 -3.0388 -3.3601 43 1 7.3823 -8.5088 -5.4552 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109350699.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:18 Heat of formation + Delta-G solvation = 14.293272 kcal Electronic energy + Delta-G solvation = -22094.584503 eV Core-core repulsion = 18947.993148 eV Total energy + Delta-G solvation = -3146.591355 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.01936 -38.49692 -36.47503 -33.87264 -32.34560 -31.31314 -29.27496 -29.00293 -27.64682 -27.39944 -24.77090 -23.86175 -21.32457 -20.34342 -19.48339 -18.60361 -18.49929 -17.13671 -16.64116 -15.68398 -15.39871 -14.99597 -14.75745 -14.39345 -14.08222 -13.90673 -13.77960 -13.26667 -12.71240 -12.38236 -12.17336 -12.10257 -11.89848 -11.73852 -11.47920 -11.17209 -11.04124 -10.98167 -10.90577 -10.88175 -10.82702 -10.21796 -10.09290 -9.85053 -9.63345 -9.35166 -9.27592 -9.13898 -8.92711 -8.47111 -6.90725 -5.72346 -3.10257 2.00821 2.92163 3.40205 3.45108 3.46622 3.54360 4.45746 4.63124 4.72411 4.94791 5.09501 5.17995 5.22167 5.33495 5.39108 5.41035 5.51802 5.62818 5.71159 5.72958 5.81812 5.84766 5.86605 5.98000 6.06699 6.08066 6.13024 6.32124 6.34131 6.44249 6.54750 6.60856 6.68675 6.71428 6.82921 6.97414 7.01123 7.28546 7.53262 7.76183 7.88744 8.17555 8.55879 9.11009 9.73554 10.54048 11.37325 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035986 B = 0.003604 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.895583 B = 7767.275296 C = 7973.954720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 C -0.121 4.121 4 C -0.071 4.071 5 C -0.134 4.134 6 C 0.506 3.494 7 O -0.545 6.545 8 N -0.713 5.713 9 C 0.126 3.874 10 H 0.082 0.918 11 C -0.141 4.141 12 C 0.153 3.847 13 H 0.154 0.846 14 C -0.136 4.136 15 C -0.130 4.130 16 C 0.128 3.872 17 H 0.084 0.916 18 N -0.590 5.590 19 C -0.210 4.210 20 H 0.079 0.921 21 C -0.013 4.013 22 N -0.924 5.924 23 Si 0.917 3.083 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.395 0.605 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.045 0.955 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.153 15.333 2.648 19.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.123 4.123 3 C -0.178 4.178 4 C -0.109 4.109 5 C -0.174 4.174 6 C 0.292 3.708 7 O -0.423 6.423 8 N -0.364 5.364 9 C 0.020 3.980 10 H 0.100 0.900 11 C -0.181 4.181 12 C 0.047 3.953 13 H 0.171 0.829 14 C -0.176 4.176 15 C -0.169 4.169 16 C 0.019 3.981 17 H 0.102 0.898 18 N -0.311 5.311 19 C -0.338 4.338 20 H 0.097 0.903 21 C -0.208 4.208 22 N -0.572 5.572 23 Si 0.748 3.252 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.208 1.208 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.108 0.892 36 H 0.229 0.771 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.771 14.611 3.365 18.461 hybrid contribution 0.455 -0.354 -0.177 0.603 sum -10.316 14.257 3.188 17.884 Atomic orbital electron populations 1.23696 0.95254 1.01769 1.02975 1.21830 0.95443 0.95828 0.99172 1.20890 1.00305 0.94475 1.02138 1.20434 1.00841 0.94005 0.95581 1.21628 1.01094 0.95651 0.99038 1.20626 0.79379 0.86756 0.84057 1.90696 1.57417 1.62710 1.31456 1.46273 1.56880 1.24846 1.08419 1.22631 0.93097 0.83293 0.98977 0.89960 1.23303 1.00930 0.99229 0.94675 1.23770 0.86158 0.94356 0.91047 0.82876 1.23035 0.99929 0.99043 0.95578 1.22898 0.99667 0.97328 0.97051 1.23188 0.91215 0.88565 0.95125 0.89785 1.46486 1.47322 1.25481 1.11805 1.19069 1.14723 1.01186 0.98779 0.90320 1.24696 1.00796 0.99051 0.96236 1.69435 1.46724 1.33789 1.07288 0.86025 0.80503 0.81472 0.77244 1.21647 1.21688 1.20755 0.88648 0.88467 0.91406 0.92003 0.91673 0.90592 0.90424 0.89085 0.89214 0.77108 0.91713 0.92775 0.92684 0.93652 0.93089 0.93092 0.93577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.68 13.89 29.01 0.40 -1.27 16 2 C -0.12 -1.11 5.31 -101.07 -0.54 -1.64 16 3 C -0.12 -0.91 10.03 36.00 0.36 -0.55 16 4 C -0.07 -0.76 4.67 -27.88 -0.13 -0.89 16 5 C -0.13 -1.39 5.68 -27.88 -0.16 -1.55 16 6 C 0.51 7.50 7.83 -10.98 -0.09 7.41 16 7 O -0.55 -10.45 15.64 5.56 0.09 -10.36 16 8 N -0.71 -10.41 3.72 -51.40 -0.19 -10.60 16 9 C 0.13 2.37 3.13 -65.43 -0.21 2.17 16 10 H 0.08 1.77 7.58 -51.93 -0.39 1.37 16 11 C -0.14 -2.70 6.20 -24.24 -0.15 -2.85 16 12 C 0.15 3.45 4.72 -62.80 -0.30 3.16 16 13 H 0.15 3.95 5.52 -51.93 -0.29 3.66 16 14 C -0.14 -2.61 6.44 -24.24 -0.16 -2.77 16 15 C -0.13 -2.38 6.32 -24.24 -0.15 -2.53 16 16 C 0.13 2.70 5.35 -62.80 -0.34 2.37 16 17 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 18 N -0.59 -14.80 2.99 -145.82 -0.44 -15.23 16 19 C -0.21 -5.82 10.59 -15.06 -0.16 -5.98 16 20 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 22 N -0.92 -26.25 10.46 55.49 0.58 -25.67 16 23 Si 0.92 22.12 29.55 -169.99 -5.02 17.10 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H 0.10 0.68 8.04 -52.49 -0.42 0.26 16 28 H 0.10 0.80 7.99 -52.49 -0.42 0.38 16 29 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 30 H 0.06 0.41 8.06 -51.93 -0.42 -0.01 16 31 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 32 H 0.08 0.90 7.94 -51.93 -0.41 0.49 16 33 H 0.08 0.92 8.06 -51.93 -0.42 0.50 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.39 4.66 7.93 -40.82 -0.32 4.34 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.05 0.86 7.39 -51.93 -0.38 0.48 16 39 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.04 0.73 7.82 -51.93 -0.41 0.32 16 41 H 0.05 0.79 6.40 -51.93 -0.33 0.45 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 343.27 15.07 5.17 5.17 Total: -1.00 -30.77 343.27 -8.65 -39.42 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -7.14 Total: 5.55 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -1.70 Total: -5.38 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: -0.05 Total: -51.50 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.77 -8.65 -39.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109350699.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.715 kcal (2) G-P(sol) polarization free energy of solvation -30.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds