Wall clock time and date at job start Tue Mar 31 2020 00:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50692 * 120.00196 * 2 1 4 4 C 1.50706 * 119.99713 * 180.02562 * 2 1 3 5 5 C 1.53005 * 109.46944 * 94.99787 * 4 2 1 6 6 C 1.50703 * 109.46636 * 179.97438 * 5 4 2 7 7 O 1.21274 * 120.00233 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99316 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99453 * 180.02562 * 8 6 5 10 10 H 1.09000 * 110.55813 * 33.05992 * 9 8 6 11 11 C 1.54854 * 110.62339 * 155.95714 * 9 8 6 12 12 C 1.55844 * 103.44617 * 118.64859 * 11 9 8 13 13 H 1.09005 * 115.56168 * 158.81010 * 12 11 9 14 14 C 1.55841 * 105.06269 * 288.17341 * 12 11 9 15 15 C 1.54854 * 103.44389 * 71.82493 * 14 12 11 16 16 C 1.55841 * 110.76436 * 270.06007 * 9 8 6 17 17 H 1.09001 * 115.56153 * 82.63117 * 16 9 8 18 18 N 1.50237 * 101.05105 * 208.50903 * 16 9 8 19 19 C 1.36938 * 130.83944 * 233.98462 * 18 16 9 20 20 H 1.07996 * 119.99532 * 0.02562 * 19 18 16 21 21 C 1.38814 * 119.99786 * 180.02562 * 19 18 16 22 22 N 1.31615 * 120.00099 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99654 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46976 * 90.00272 * 23 21 19 25 25 H 1.48494 * 109.47180 * 210.00030 * 23 21 19 26 26 H 1.48497 * 109.47416 * 330.00196 * 23 21 19 27 27 H 1.07995 * 119.99813 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.00135 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46786 * 270.00139 * 3 2 1 30 30 H 1.08995 * 109.47533 * 29.99716 * 3 2 1 31 31 H 1.09000 * 109.47325 * 150.00171 * 3 2 1 32 32 H 1.08995 * 109.47069 * 335.00085 * 4 2 1 33 33 H 1.09000 * 109.47096 * 214.99822 * 4 2 1 34 34 H 1.08995 * 109.46994 * 60.00252 * 5 4 2 35 35 H 1.09000 * 109.47253 * 299.99939 * 5 4 2 36 36 H 0.96999 * 120.00452 * 0.02562 * 8 6 5 37 37 H 1.08998 * 110.62411 * 237.13824 * 11 9 8 38 38 H 1.08995 * 110.62766 * 0.15689 * 11 9 8 39 39 H 1.09007 * 110.62512 * 190.30943 * 14 12 11 40 40 H 1.08997 * 110.62829 * 313.17320 * 14 12 11 41 41 H 1.09002 * 110.62596 * 241.50557 * 15 14 12 42 42 H 1.09001 * 110.62477 * 118.48789 * 15 14 12 43 43 H 0.97004 * 119.99959 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0635 -1.3052 -0.0006 5 6 2.4273 -1.6834 -1.4378 6 6 3.1813 -2.9882 -1.4383 7 8 3.4052 -3.5596 -0.3923 8 7 3.6059 -3.5206 -2.6014 9 6 4.3384 -4.7894 -2.6019 10 1 3.9852 -5.4356 -1.7983 11 6 4.2011 -5.4979 -3.9720 12 6 5.6702 -5.5823 -4.4852 13 1 5.8610 -6.3426 -5.2426 14 6 6.0495 -4.1204 -4.8696 15 6 6.1868 -3.4119 -3.4995 16 6 5.8718 -4.5422 -2.4738 17 1 6.2400 -4.3864 -1.4598 18 7 6.4181 -5.7433 -3.1921 19 6 7.3198 -6.6928 -2.7914 20 1 7.7578 -6.6396 -1.8057 21 6 7.6708 -7.7237 -3.6523 22 7 7.1373 -7.7882 -4.8537 23 14 8.9004 -9.0193 -3.1054 24 1 8.1794 -10.1422 -2.4539 25 1 9.6429 -9.5271 -4.2869 26 1 9.8563 -8.4187 -2.1407 27 1 -0.5399 0.9353 0.0004 28 1 -0.5400 -0.9353 -0.0004 29 1 2.2452 1.6196 -1.0278 30 1 1.4746 2.0647 0.5138 31 1 3.0160 1.1747 0.5138 32 1 1.4386 -2.0857 0.4333 33 1 2.9743 -1.1992 0.5889 34 1 3.0523 -0.9029 -1.8718 35 1 1.5166 -1.7893 -2.0273 36 1 3.4265 -3.0638 -3.4381 37 1 3.7799 -6.4955 -3.8479 38 1 3.5904 -4.9040 -4.6519 39 1 6.9962 -4.0987 -5.4096 40 1 5.2591 -3.6623 -5.4641 41 1 5.4632 -2.6014 -3.4121 42 1 7.2014 -3.0388 -3.3601 43 1 7.3823 -8.5088 -5.4552 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109350699.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:17 Heat of formation + Delta-G solvation = -3.613001 kcal Electronic energy + Delta-G solvation = -22095.360978 eV Core-core repulsion = 18947.993148 eV Total energy + Delta-G solvation = -3147.367830 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.46608 -39.90515 -37.25448 -35.42254 -34.20516 -32.23048 -31.00893 -30.65445 -29.16075 -28.04275 -26.33090 -25.22418 -22.81270 -21.77894 -21.09105 -20.13817 -19.28093 -18.92715 -17.87995 -16.85361 -16.75908 -16.72674 -16.16532 -15.75125 -15.38822 -15.01602 -14.87109 -14.11874 -14.09063 -13.86929 -13.53603 -13.37536 -13.23714 -12.92603 -12.86898 -12.78911 -12.58725 -12.48471 -12.37209 -12.00448 -11.92448 -11.89772 -11.77378 -11.56661 -11.18806 -11.04602 -10.77469 -10.76587 -9.95377 -9.86324 -8.86137 -7.80663 -5.19946 1.35281 1.45166 1.46544 1.54674 1.74700 2.29846 2.51165 3.32724 3.51316 3.76789 3.96233 4.01776 4.10020 4.12312 4.15126 4.33852 4.40462 4.45342 4.49375 4.61534 4.70656 4.73490 4.76745 4.82162 4.91790 4.98613 5.03012 5.07583 5.13596 5.15279 5.19800 5.23879 5.27554 5.33852 5.46882 5.56317 5.77154 5.80008 5.89464 6.03739 6.27310 6.70888 7.04902 7.40572 7.68269 8.54427 9.26153 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035986 B = 0.003604 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.895583 B = 7767.275296 C = 7973.954720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 C -0.121 4.121 4 C -0.070 4.070 5 C -0.121 4.121 6 C 0.504 3.496 7 O -0.594 6.594 8 N -0.700 5.700 9 C 0.145 3.855 10 H 0.048 0.952 11 C -0.126 4.126 12 C 0.136 3.864 13 H 0.120 0.880 14 C -0.124 4.124 15 C -0.115 4.115 16 C 0.117 3.883 17 H 0.063 0.937 18 N -0.620 5.620 19 C -0.226 4.226 20 H 0.070 0.930 21 C -0.063 4.063 22 N -0.944 5.944 23 Si 0.976 3.024 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.276 1.276 27 H 0.111 0.889 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.415 0.585 37 H 0.042 0.958 38 H 0.098 0.902 39 H 0.034 0.966 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.041 0.959 43 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.647 18.006 1.776 22.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.131 4.131 3 C -0.177 4.177 4 C -0.108 4.108 5 C -0.160 4.160 6 C 0.292 3.708 7 O -0.475 6.475 8 N -0.352 5.352 9 C 0.037 3.963 10 H 0.066 0.934 11 C -0.166 4.166 12 C 0.031 3.969 13 H 0.137 0.863 14 C -0.164 4.164 15 C -0.154 4.154 16 C 0.009 3.991 17 H 0.082 0.918 18 N -0.342 5.342 19 C -0.355 4.355 20 H 0.088 0.912 21 C -0.256 4.256 22 N -0.593 5.593 23 Si 0.805 3.195 24 H -0.217 1.217 25 H -0.216 1.216 26 H -0.201 1.201 27 H 0.129 0.871 28 H 0.113 0.887 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.253 0.747 37 H 0.061 0.939 38 H 0.116 0.884 39 H 0.053 0.947 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.060 0.940 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -12.295 17.342 2.471 21.402 hybrid contribution 0.871 -1.175 0.166 1.472 sum -11.425 16.167 2.637 19.972 Atomic orbital electron populations 1.23844 0.95120 1.02453 1.01853 1.21792 0.95621 0.95442 1.00216 1.20909 1.00013 0.93816 1.03002 1.20372 1.00043 0.94701 0.95702 1.21636 1.01887 0.93208 0.99276 1.21489 0.78584 0.87709 0.83006 1.90691 1.59163 1.64326 1.33316 1.46020 1.56164 1.23349 1.09663 1.22041 0.91833 0.84739 0.97676 0.93374 1.23132 0.99181 0.99020 0.95272 1.23706 0.87921 0.95655 0.89665 0.86270 1.22929 1.00396 0.96849 0.96184 1.22804 1.00363 0.97023 0.95215 1.23334 0.92471 0.88542 0.94723 0.91848 1.46755 1.47612 1.26217 1.13605 1.19300 1.15358 1.02273 0.98588 0.91238 1.25411 1.02737 1.00880 0.96556 1.69666 1.47691 1.34079 1.07873 0.85112 0.78577 0.79062 0.76782 1.21675 1.21614 1.20136 0.87110 0.88702 0.90189 0.91104 0.92145 0.92406 0.92103 0.86267 0.86547 0.74664 0.93907 0.88410 0.94678 0.89226 0.89097 0.93988 0.94108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.75 13.89 67.77 0.94 -1.81 16 2 C -0.13 -2.02 5.31 -16.49 -0.09 -2.11 16 3 C -0.12 -1.46 10.03 71.23 0.71 -0.75 16 4 C -0.07 -1.40 4.67 29.85 0.14 -1.26 16 5 C -0.12 -2.08 5.68 29.85 0.17 -1.91 16 6 C 0.50 13.90 7.83 87.66 0.69 14.59 16 7 O -0.59 -22.85 15.64 -3.01 -0.05 -22.90 16 8 N -0.70 -18.33 3.72 -434.91 -1.62 -19.95 16 9 C 0.14 5.34 3.13 46.61 0.15 5.49 16 10 H 0.05 2.12 7.58 -2.39 -0.02 2.10 16 11 C -0.13 -4.65 6.20 32.21 0.20 -4.45 16 12 C 0.14 6.13 4.72 46.23 0.22 6.35 16 13 H 0.12 6.28 5.52 -2.38 -0.01 6.27 16 14 C -0.12 -4.48 6.44 32.21 0.21 -4.27 16 15 C -0.11 -3.95 6.32 32.21 0.20 -3.74 16 16 C 0.12 4.96 5.35 46.23 0.25 5.21 16 17 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 18 N -0.62 -31.82 2.99 -615.25 -1.84 -33.66 16 19 C -0.23 -13.00 10.59 84.03 0.89 -12.11 16 20 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 21 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 22 N -0.94 -55.18 10.46 21.65 0.23 -54.95 16 23 Si 0.98 46.63 29.55 68.60 2.03 48.66 16 24 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 25 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 26 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 27 H 0.11 1.22 8.04 -2.91 -0.02 1.19 16 28 H 0.09 1.36 7.99 -2.91 -0.02 1.34 16 29 H 0.08 0.77 8.14 -2.38 -0.02 0.76 16 30 H 0.07 0.73 8.06 -2.39 -0.02 0.71 16 31 H 0.06 0.78 8.08 -2.39 -0.02 0.77 16 32 H 0.06 1.34 7.94 -2.39 -0.02 1.32 16 33 H 0.06 1.40 8.06 -2.39 -0.02 1.38 16 34 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.42 7.62 7.93 -92.71 -0.73 6.89 16 37 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.10 2.71 7.39 -2.39 -0.02 2.70 16 39 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 40 H 0.09 2.44 7.82 -2.39 -0.02 2.42 16 41 H 0.09 2.39 6.40 -2.39 -0.02 2.37 16 42 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 Total: -1.00 -71.02 343.27 4.15 -66.87 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.25 Total: 19.84 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 5.14 Total: -3.91 kcal Atomic # 7 Polarization: -105.34 SS G_CDS: -3.23 Total: -108.56 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -0.05 Total: -22.90 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -71.02 4.15 -66.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109350699.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.259 kcal (2) G-P(sol) polarization free energy of solvation -71.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds