Wall clock time and date at job start Tue Mar 31 2020 00:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 120.00092 * 2 1 4 4 C 1.52997 * 109.47348 * 125.00013 * 3 2 1 5 5 C 1.53004 * 109.47288 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.46788 * 179.97438 * 5 4 3 7 7 O 1.21276 * 120.00687 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99625 * 179.97438 * 6 5 4 9 9 C 1.46505 * 120.00104 * 180.02562 * 8 6 5 10 10 H 1.08999 * 110.55724 * 33.09527 * 9 8 6 11 11 C 1.54847 * 110.62519 * 155.99684 * 9 8 6 12 12 C 1.55850 * 103.44594 * 118.48944 * 11 9 8 13 13 H 1.08996 * 115.56337 * 158.80719 * 12 11 9 14 14 C 1.55845 * 105.06439 * 288.17818 * 12 11 9 15 15 C 1.54849 * 103.44818 * 71.81948 * 14 12 11 16 16 C 1.55840 * 110.62394 * 270.02496 * 9 8 6 17 17 H 1.09000 * 115.56405 * 82.69958 * 16 9 8 18 18 N 1.50239 * 101.04814 * 208.57047 * 16 9 8 19 19 C 1.36938 * 130.83935 * 233.96275 * 18 16 9 20 20 H 1.07995 * 120.00088 * 359.97438 * 19 18 16 21 21 C 1.38815 * 120.00038 * 179.97438 * 19 18 16 22 22 N 1.31616 * 119.99884 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99953 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46973 * 90.00307 * 23 21 19 25 25 H 1.48502 * 109.46912 * 209.99979 * 23 21 19 26 26 H 1.48497 * 109.46879 * 330.00073 * 23 21 19 27 27 H 1.07999 * 120.00138 * 180.02562 * 1 2 3 28 28 H 1.07998 * 120.00012 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.00012 * 180.02562 * 2 1 3 30 30 H 1.09007 * 109.46961 * 4.99686 * 3 2 1 31 31 H 1.08996 * 109.47369 * 245.00052 * 3 2 1 32 32 H 1.09003 * 109.47246 * 300.00082 * 4 3 2 33 33 H 1.09001 * 109.47205 * 59.99516 * 4 3 2 34 34 H 1.08999 * 109.46648 * 299.99820 * 5 4 3 35 35 H 1.09000 * 109.46749 * 59.99901 * 5 4 3 36 36 H 0.97006 * 119.99823 * 0.02562 * 8 6 5 37 37 H 1.08992 * 110.62955 * 236.97612 * 11 9 8 38 38 H 1.09003 * 110.63089 * 359.84531 * 11 9 8 39 39 H 1.09002 * 110.62426 * 190.31492 * 14 12 11 40 40 H 1.09005 * 110.62654 * 313.32840 * 14 12 11 41 41 H 1.09008 * 110.62667 * 241.50819 * 15 14 12 42 42 H 1.09000 * 110.76369 * 118.55892 * 15 14 12 43 43 H 0.97000 * 120.00135 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.7997 2.6584 1.1819 6 6 4.7561 2.6861 2.3462 7 8 4.8204 1.7391 3.1010 8 7 5.5409 3.7631 2.5480 9 6 6.4712 3.7900 3.6794 10 1 6.8482 2.7889 3.8889 11 6 7.6406 4.7661 3.4011 12 6 7.5016 5.8298 4.5316 13 1 8.4030 6.4011 4.7533 14 6 6.2383 6.6604 4.1532 15 6 5.0689 5.6842 4.4314 16 6 5.7848 4.3967 4.9401 17 1 5.1743 3.7059 5.5216 18 7 6.9667 4.9878 5.6550 19 6 7.4175 4.8129 6.9362 20 1 6.8887 4.1548 7.6096 21 6 8.5542 5.4817 7.3693 22 7 9.1984 6.2842 6.5488 23 14 9.1695 5.2427 9.1168 24 1 10.1258 4.1071 9.1539 25 1 9.8519 6.4795 9.5748 26 1 8.0201 4.9514 10.0108 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6213 1.4026 -0.9313 32 1 2.4773 1.2356 2.1130 33 1 3.7400 0.5065 1.0921 34 1 4.3574 2.7562 0.2506 35 1 3.0944 3.4846 1.2717 36 1 5.4898 4.5205 1.9440 37 1 8.5976 4.2499 3.4753 38 1 7.5299 5.2282 2.4201 39 1 6.1579 7.5458 4.7838 40 1 6.2634 6.9391 3.0997 41 1 4.5140 5.4788 3.5159 42 1 4.4063 6.0839 5.1991 43 1 9.9929 6.7512 6.8513 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109656451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:23 Heat of formation + Delta-G solvation = 13.903068 kcal Electronic energy + Delta-G solvation = -21909.025604 eV Core-core repulsion = 18762.417328 eV Total energy + Delta-G solvation = -3146.608276 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.00301 -38.44966 -36.10459 -33.86271 -32.54661 -32.21793 -29.35910 -29.03859 -28.07091 -26.69511 -24.18518 -22.41536 -21.23324 -20.29791 -19.96757 -19.45999 -18.51814 -17.14896 -16.68708 -15.97681 -15.43113 -15.18086 -14.84068 -14.45561 -14.04350 -13.94899 -13.55249 -13.39613 -12.65313 -12.30303 -12.19573 -11.84621 -11.73194 -11.64495 -11.47685 -11.09130 -11.02804 -10.90179 -10.88160 -10.82587 -10.82079 -10.21338 -10.09079 -9.84673 -9.61795 -9.50537 -9.33376 -9.21422 -8.92564 -8.46457 -6.90486 -5.72205 -3.10075 2.05750 2.93711 3.40303 3.45151 3.46695 3.53650 4.46033 4.58717 4.76700 4.88024 5.04573 5.11814 5.22038 5.33703 5.39269 5.42892 5.53249 5.59635 5.62315 5.73270 5.82734 5.86189 5.98195 6.02417 6.08268 6.13145 6.22241 6.32633 6.34605 6.40829 6.54775 6.54854 6.61169 6.71921 6.83354 6.97825 7.01388 7.28861 7.53479 7.76590 7.89818 8.17779 8.57526 9.11223 9.73707 10.54271 11.37502 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034498 B = 0.003409 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.440733 B = 8212.551826 C = 8550.587535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.149 4.149 3 C -0.096 4.096 4 C -0.099 4.099 5 C -0.141 4.141 6 C 0.505 3.495 7 O -0.545 6.545 8 N -0.714 5.714 9 C 0.126 3.874 10 H 0.082 0.918 11 C -0.141 4.141 12 C 0.154 3.846 13 H 0.154 0.846 14 C -0.136 4.136 15 C -0.130 4.130 16 C 0.128 3.872 17 H 0.084 0.916 18 N -0.590 5.590 19 C -0.209 4.209 20 H 0.079 0.921 21 C -0.013 4.013 22 N -0.924 5.924 23 Si 0.917 3.083 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.108 0.892 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.395 0.605 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.045 0.955 41 H 0.050 0.950 42 H 0.050 0.950 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.632 -4.381 -14.899 19.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.167 4.167 3 C -0.133 4.133 4 C -0.137 4.137 5 C -0.181 4.181 6 C 0.291 3.709 7 O -0.423 6.423 8 N -0.365 5.365 9 C 0.020 3.980 10 H 0.100 0.900 11 C -0.181 4.181 12 C 0.047 3.953 13 H 0.171 0.829 14 C -0.176 4.176 15 C -0.169 4.169 16 C 0.019 3.981 17 H 0.102 0.898 18 N -0.311 5.311 19 C -0.337 4.337 20 H 0.097 0.903 21 C -0.208 4.208 22 N -0.573 5.573 23 Si 0.748 3.252 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.208 1.208 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.126 0.874 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.229 0.771 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.356 -5.005 -14.056 18.750 hybrid contribution 0.221 0.234 0.534 0.624 sum -11.135 -4.771 -13.522 18.155 Atomic orbital electron populations 1.23838 0.95994 1.01734 1.02122 1.22985 0.96025 0.98686 0.99020 1.20814 0.98245 0.95374 0.98883 1.21268 0.97626 0.96433 0.98393 1.21700 0.98383 1.00371 0.97694 1.20640 0.81306 0.82583 0.86331 1.90695 1.68197 1.35677 1.47700 1.46288 1.40807 1.18847 1.30561 1.22628 0.89586 1.00061 0.85713 0.89961 1.23303 0.96897 0.98774 0.99168 1.23762 0.97133 0.90629 0.83756 0.82892 1.23038 0.97831 0.98489 0.98225 1.22897 0.97333 0.97630 0.99077 1.23193 0.90244 0.93560 0.91128 0.89793 1.46486 1.26518 1.49331 1.08760 1.19071 1.06883 1.21899 0.85881 0.90322 1.24698 0.97973 0.99699 0.98439 1.69435 1.20691 1.32983 1.34155 0.86022 0.78568 0.77021 0.83616 1.21652 1.21687 1.20758 0.88679 0.88661 0.87397 0.91493 0.90988 0.91050 0.91104 0.89236 0.89164 0.77131 0.91739 0.92782 0.92667 0.93651 0.93101 0.93111 0.93578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.56 14.32 29.01 0.42 -1.15 16 2 C -0.15 -1.25 9.52 -36.03 -0.34 -1.60 16 3 C -0.10 -0.77 5.66 -27.89 -0.16 -0.93 16 4 C -0.10 -1.02 4.49 -26.73 -0.12 -1.14 16 5 C -0.14 -1.40 5.70 -27.88 -0.16 -1.56 16 6 C 0.51 7.47 7.83 -10.98 -0.09 7.38 16 7 O -0.55 -10.50 15.64 5.56 0.09 -10.41 16 8 N -0.71 -10.39 3.71 -51.40 -0.19 -10.58 16 9 C 0.13 2.38 3.14 -65.44 -0.21 2.17 16 10 H 0.08 1.77 7.58 -51.93 -0.39 1.37 16 11 C -0.14 -2.70 6.20 -24.24 -0.15 -2.85 16 12 C 0.15 3.46 4.72 -62.79 -0.30 3.17 16 13 H 0.15 3.95 5.52 -51.93 -0.29 3.66 16 14 C -0.14 -2.61 6.44 -24.24 -0.16 -2.77 16 15 C -0.13 -2.39 6.32 -24.24 -0.15 -2.54 16 16 C 0.13 2.71 5.35 -62.80 -0.34 2.37 16 17 H 0.08 1.86 8.14 -51.93 -0.42 1.44 16 18 N -0.59 -14.82 2.99 -145.81 -0.44 -15.25 16 19 C -0.21 -5.82 10.59 -15.06 -0.16 -5.98 16 20 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 22 N -0.92 -26.30 10.46 55.49 0.58 -25.71 16 23 Si 0.92 22.15 29.55 -169.99 -5.02 17.13 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 27 H 0.09 0.65 8.06 -52.49 -0.42 0.23 16 28 H 0.10 0.68 7.84 -52.49 -0.41 0.27 16 29 H 0.11 0.86 8.06 -52.49 -0.42 0.44 16 30 H 0.07 0.50 7.79 -51.92 -0.40 0.09 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 33 H 0.07 0.81 8.10 -51.93 -0.42 0.38 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.39 4.62 7.92 -40.82 -0.32 4.29 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.05 0.86 7.39 -51.93 -0.38 0.47 16 39 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.04 0.73 7.82 -51.93 -0.41 0.32 16 41 H 0.05 0.79 6.39 -51.92 -0.33 0.45 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 343.14 15.07 5.17 5.17 Total: -1.00 -31.02 343.14 -8.95 -39.97 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -7.13 Total: 5.57 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -2.00 Total: -5.87 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: -0.05 Total: -51.54 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.02 -8.95 -39.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109656451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.869 kcal (2) G-P(sol) polarization free energy of solvation -31.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds