Wall clock time and date at job start Tue Mar 31 2020 00:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 120.00092 * 2 1 4 4 C 1.52997 * 109.47348 * 125.00013 * 3 2 1 5 5 C 1.53004 * 109.47288 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.46788 * 179.97438 * 5 4 3 7 7 O 1.21276 * 120.00687 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99625 * 179.97438 * 6 5 4 9 9 C 1.46505 * 120.00104 * 180.02562 * 8 6 5 10 10 H 1.08999 * 110.55724 * 33.09527 * 9 8 6 11 11 C 1.54847 * 110.62519 * 155.99684 * 9 8 6 12 12 C 1.55850 * 103.44594 * 118.48944 * 11 9 8 13 13 H 1.08996 * 115.56337 * 158.80719 * 12 11 9 14 14 C 1.55845 * 105.06439 * 288.17818 * 12 11 9 15 15 C 1.54849 * 103.44818 * 71.81948 * 14 12 11 16 16 C 1.55840 * 110.62394 * 270.02496 * 9 8 6 17 17 H 1.09000 * 115.56405 * 82.69958 * 16 9 8 18 18 N 1.50239 * 101.04814 * 208.57047 * 16 9 8 19 19 C 1.36938 * 130.83935 * 233.96275 * 18 16 9 20 20 H 1.07995 * 120.00088 * 359.97438 * 19 18 16 21 21 C 1.38815 * 120.00038 * 179.97438 * 19 18 16 22 22 N 1.31616 * 119.99884 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99953 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46973 * 90.00307 * 23 21 19 25 25 H 1.48502 * 109.46912 * 209.99979 * 23 21 19 26 26 H 1.48497 * 109.46879 * 330.00073 * 23 21 19 27 27 H 1.07999 * 120.00138 * 180.02562 * 1 2 3 28 28 H 1.07998 * 120.00012 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.00012 * 180.02562 * 2 1 3 30 30 H 1.09007 * 109.46961 * 4.99686 * 3 2 1 31 31 H 1.08996 * 109.47369 * 245.00052 * 3 2 1 32 32 H 1.09003 * 109.47246 * 300.00082 * 4 3 2 33 33 H 1.09001 * 109.47205 * 59.99516 * 4 3 2 34 34 H 1.08999 * 109.46648 * 299.99820 * 5 4 3 35 35 H 1.09000 * 109.46749 * 59.99901 * 5 4 3 36 36 H 0.97006 * 119.99823 * 0.02562 * 8 6 5 37 37 H 1.08992 * 110.62955 * 236.97612 * 11 9 8 38 38 H 1.09003 * 110.63089 * 359.84531 * 11 9 8 39 39 H 1.09002 * 110.62426 * 190.31492 * 14 12 11 40 40 H 1.09005 * 110.62654 * 313.32840 * 14 12 11 41 41 H 1.09008 * 110.62667 * 241.50819 * 15 14 12 42 42 H 1.09000 * 110.76369 * 118.55892 * 15 14 12 43 43 H 0.97000 * 120.00135 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 6 3.7997 2.6584 1.1819 6 6 4.7561 2.6861 2.3462 7 8 4.8204 1.7391 3.1010 8 7 5.5409 3.7631 2.5480 9 6 6.4712 3.7900 3.6794 10 1 6.8482 2.7889 3.8889 11 6 7.6406 4.7661 3.4011 12 6 7.5016 5.8298 4.5316 13 1 8.4030 6.4011 4.7533 14 6 6.2383 6.6604 4.1532 15 6 5.0689 5.6842 4.4314 16 6 5.7848 4.3967 4.9401 17 1 5.1743 3.7059 5.5216 18 7 6.9667 4.9878 5.6550 19 6 7.4175 4.8129 6.9362 20 1 6.8887 4.1548 7.6096 21 6 8.5542 5.4817 7.3693 22 7 9.1984 6.2842 6.5488 23 14 9.1695 5.2427 9.1168 24 1 10.1258 4.1071 9.1539 25 1 9.8519 6.4795 9.5748 26 1 8.0201 4.9514 10.0108 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3586 2.1316 0.0895 31 1 2.6213 1.4026 -0.9313 32 1 2.4773 1.2356 2.1130 33 1 3.7400 0.5065 1.0921 34 1 4.3574 2.7562 0.2506 35 1 3.0944 3.4846 1.2717 36 1 5.4898 4.5205 1.9440 37 1 8.5976 4.2499 3.4753 38 1 7.5299 5.2282 2.4201 39 1 6.1579 7.5458 4.7838 40 1 6.2634 6.9391 3.0997 41 1 4.5140 5.4788 3.5159 42 1 4.4063 6.0839 5.1991 43 1 9.9929 6.7512 6.8513 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109656451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:23 Heat of formation + Delta-G solvation = -4.264759 kcal Electronic energy + Delta-G solvation = -21909.813420 eV Core-core repulsion = 18762.417328 eV Total energy + Delta-G solvation = -3147.396092 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.44918 -39.85849 -36.82796 -35.40957 -34.20431 -33.21311 -31.01444 -30.75362 -29.47233 -27.76714 -26.07027 -23.43599 -22.64829 -21.60913 -21.05914 -20.60169 -20.11814 -18.92546 -17.94920 -16.88759 -16.83039 -16.72369 -16.31001 -15.87693 -15.57394 -15.04264 -14.67510 -14.27203 -14.13094 -13.86340 -13.47846 -13.34719 -13.12773 -12.86747 -12.78923 -12.62137 -12.53688 -12.42682 -12.33684 -12.00447 -11.90135 -11.72599 -11.58822 -11.54644 -11.18167 -11.04396 -10.76979 -10.71549 -10.15139 -9.93446 -8.85992 -7.80831 -5.20050 1.44779 1.45185 1.46379 1.54508 1.78193 2.30466 2.51220 3.32524 3.51921 3.84777 3.91716 3.99376 4.09916 4.15352 4.17247 4.37709 4.42666 4.43230 4.47825 4.61807 4.69648 4.72944 4.77923 4.82641 4.83576 4.98680 4.99137 5.07968 5.11629 5.15670 5.27452 5.28543 5.33818 5.45958 5.47177 5.57233 5.78638 5.81920 5.89712 5.94429 6.27483 6.73906 7.04926 7.44025 7.68173 8.54419 9.26008 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.034498 B = 0.003409 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.440733 B = 8212.551826 C = 8550.587535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.167 4.167 3 C -0.088 4.088 4 C -0.097 4.097 5 C -0.129 4.129 6 C 0.501 3.499 7 O -0.597 6.597 8 N -0.700 5.700 9 C 0.145 3.855 10 H 0.047 0.953 11 C -0.126 4.126 12 C 0.137 3.863 13 H 0.120 0.880 14 C -0.124 4.124 15 C -0.115 4.115 16 C 0.116 3.884 17 H 0.062 0.938 18 N -0.620 5.620 19 C -0.226 4.226 20 H 0.069 0.931 21 C -0.064 4.064 22 N -0.944 5.944 23 Si 0.976 3.024 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.276 1.276 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.416 0.584 37 H 0.041 0.959 38 H 0.098 0.902 39 H 0.034 0.966 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.040 0.960 43 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.238 -3.518 -17.547 22.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.185 4.185 3 C -0.125 4.125 4 C -0.136 4.136 5 C -0.168 4.168 6 C 0.290 3.710 7 O -0.478 6.478 8 N -0.353 5.353 9 C 0.037 3.963 10 H 0.066 0.934 11 C -0.166 4.166 12 C 0.031 3.969 13 H 0.137 0.863 14 C -0.164 4.164 15 C -0.154 4.154 16 C 0.008 3.992 17 H 0.080 0.920 18 N -0.342 5.342 19 C -0.355 4.355 20 H 0.087 0.913 21 C -0.256 4.256 22 N -0.593 5.593 23 Si 0.805 3.195 24 H -0.217 1.217 25 H -0.216 1.216 26 H -0.202 1.202 27 H 0.119 0.881 28 H 0.122 0.878 29 H 0.122 0.878 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.141 0.859 35 H 0.139 0.861 36 H 0.254 0.746 37 H 0.060 0.940 38 H 0.117 0.883 39 H 0.053 0.947 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.059 0.941 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -12.998 -4.123 -16.762 21.608 hybrid contribution 0.676 -0.112 1.351 1.515 sum -12.321 -4.235 -15.411 20.180 Atomic orbital electron populations 1.24012 0.95944 1.02501 1.01180 1.23114 0.96453 0.99043 0.99904 1.20758 0.97931 0.95470 0.98299 1.21216 0.97584 0.96321 0.98441 1.21737 0.97765 1.00937 0.96356 1.21611 0.81151 0.81384 0.86873 1.90691 1.69643 1.37590 1.49848 1.46038 1.39856 1.19916 1.29470 1.22030 0.90003 0.97859 0.86414 0.93441 1.23131 0.95840 0.97548 1.00075 1.23694 0.97427 0.91608 0.84134 0.86310 1.22933 0.95881 0.97089 1.00452 1.22802 0.96872 0.95286 1.00426 1.23342 0.89588 0.94696 0.91538 0.91966 1.46757 1.28124 1.50637 1.08687 1.19299 1.07120 1.21595 0.87502 0.91283 1.25415 0.98355 1.00010 1.01848 1.69665 1.20756 1.33630 1.35283 0.85106 0.77917 0.76639 0.79840 1.21668 1.21584 1.20164 0.88128 0.87805 0.87768 0.90226 0.89386 0.93434 0.92938 0.85892 0.86147 0.74628 0.93962 0.88341 0.94680 0.89148 0.89051 0.94061 0.94097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.74 14.32 67.78 0.97 -1.77 16 2 C -0.17 -2.52 9.52 25.64 0.24 -2.28 16 3 C -0.09 -1.14 5.66 29.85 0.17 -0.97 16 4 C -0.10 -1.81 4.49 30.59 0.14 -1.68 16 5 C -0.13 -2.02 5.70 29.85 0.17 -1.85 16 6 C 0.50 13.67 7.83 87.66 0.69 14.36 16 7 O -0.60 -23.05 15.64 -3.02 -0.05 -23.10 16 8 N -0.70 -18.15 3.71 -434.92 -1.61 -19.77 16 9 C 0.14 5.34 3.14 46.60 0.15 5.49 16 10 H 0.05 2.10 7.58 -2.39 -0.02 2.08 16 11 C -0.13 -4.64 6.20 32.21 0.20 -4.44 16 12 C 0.14 6.16 4.72 46.23 0.22 6.38 16 13 H 0.12 6.26 5.52 -2.39 -0.01 6.25 16 14 C -0.12 -4.47 6.44 32.21 0.21 -4.27 16 15 C -0.11 -3.94 6.32 32.21 0.20 -3.74 16 16 C 0.12 4.94 5.35 46.23 0.25 5.19 16 17 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 18 N -0.62 -31.89 2.99 -615.23 -1.84 -33.73 16 19 C -0.23 -13.04 10.59 84.03 0.89 -12.15 16 20 H 0.07 3.96 7.83 -2.91 -0.02 3.93 16 21 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 22 N -0.94 -55.27 10.46 21.65 0.23 -55.05 16 23 Si 0.98 46.72 29.55 68.60 2.03 48.75 16 24 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 25 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 26 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 27 H 0.10 1.22 8.06 -2.91 -0.02 1.20 16 28 H 0.10 1.23 7.84 -2.91 -0.02 1.20 16 29 H 0.10 1.59 8.06 -2.91 -0.02 1.57 16 30 H 0.08 0.86 7.79 -2.38 -0.02 0.84 16 31 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 33 H 0.05 1.15 8.10 -2.39 -0.02 1.14 16 34 H 0.12 1.22 8.14 -2.39 -0.02 1.21 16 35 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.42 7.42 7.92 -92.70 -0.73 6.68 16 37 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.10 2.71 7.39 -2.39 -0.02 2.69 16 39 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.09 2.44 7.82 -2.38 -0.02 2.42 16 41 H 0.09 2.39 6.39 -2.38 -0.02 2.38 16 42 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.25 14.18 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -72.30 343.14 3.96 -68.34 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.25 Total: 19.45 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: 4.96 Total: -4.90 kcal Atomic # 7 Polarization: -105.32 SS G_CDS: -3.22 Total: -108.54 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.05 Total: -23.10 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -72.30 3.96 -68.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109656451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.078 kcal (2) G-P(sol) polarization free energy of solvation -72.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds