Wall clock time and date at job start Tue Mar 31 2020 00:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47225 * 2 1 4 4 C 1.33003 * 119.99453 * 120.21026 * 3 2 1 5 5 C 1.50697 * 120.00057 * 5.73847 * 4 3 2 6 6 C 1.47101 * 119.99549 * 185.73355 * 4 3 2 7 7 O 1.21608 * 120.00483 * 0.02562 * 6 4 3 8 8 N 1.34782 * 119.99457 * 180.02562 * 6 4 3 9 9 C 1.46507 * 119.99381 * 179.97438 * 8 6 4 10 10 H 1.09002 * 110.68201 * 36.53817 * 9 8 6 11 11 C 1.54845 * 110.62728 * 273.54372 * 9 8 6 12 12 C 1.55839 * 103.58916 * 241.59284 * 11 9 8 13 13 H 1.09004 * 115.56168 * 158.73431 * 12 11 9 14 14 C 1.55842 * 105.06514 * 287.34412 * 12 11 9 15 15 C 1.54856 * 103.44375 * 71.82452 * 14 12 11 16 16 C 1.55838 * 103.44581 * 0.02562 * 15 14 12 17 17 H 1.08997 * 115.56302 * 158.81020 * 16 15 14 18 18 N 1.50233 * 101.05215 * 32.86357 * 12 11 9 19 19 C 1.36930 * 130.84292 * 126.01039 * 18 12 11 20 20 H 1.08003 * 119.99730 * 351.07401 * 19 18 12 21 21 C 1.38809 * 120.00376 * 171.07227 * 19 18 12 22 22 N 1.31622 * 120.00279 * 160.43651 * 21 19 18 23 23 Si 1.86804 * 119.99803 * 340.44111 * 21 19 18 24 24 H 1.48500 * 109.47147 * 87.36665 * 23 21 19 25 25 H 1.48506 * 109.47003 * 207.36528 * 23 21 19 26 26 H 1.48500 * 109.47034 * 327.36157 * 23 21 19 27 27 H 1.09006 * 109.46812 * 299.99765 * 1 2 3 28 28 H 1.08999 * 109.47202 * 59.99088 * 1 2 3 29 29 H 1.08997 * 109.47616 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46812 * 240.00235 * 2 1 3 31 31 H 1.08999 * 109.47202 * 120.00912 * 2 1 3 32 32 H 1.07989 * 120.00544 * 300.21093 * 3 2 1 33 33 H 1.09005 * 109.47064 * 179.48276 * 5 4 3 34 34 H 1.09002 * 109.46910 * 299.47593 * 5 4 3 35 35 H 1.08994 * 109.47771 * 59.47409 * 5 4 3 36 36 H 0.96992 * 120.00533 * 0.02562 * 8 6 4 37 37 H 1.09009 * 110.62607 * 123.02273 * 11 9 8 38 38 H 1.09000 * 110.62523 * 0.16793 * 11 9 8 39 39 H 1.09006 * 110.62736 * 190.31502 * 14 12 11 40 40 H 1.09003 * 110.62953 * 313.33548 * 14 12 11 41 41 H 1.09007 * 110.62338 * 118.48895 * 15 14 12 42 42 H 1.09000 * 110.62743 * 241.50711 * 15 14 12 43 43 H 0.96997 * 119.99895 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8004 1.8544 0.9955 5 6 3.2750 0.8933 2.0547 6 6 3.1868 3.2722 1.0623 7 8 2.8036 4.0479 0.2077 8 7 3.9656 3.7116 2.0708 9 6 4.3508 5.1235 2.1370 10 1 3.5346 5.7616 1.7982 11 6 5.6278 5.3804 1.2997 12 6 6.6611 5.8827 2.3526 13 1 7.7087 5.7834 2.0681 14 6 6.1978 7.3249 2.7188 15 6 4.9162 7.0897 3.5557 16 6 4.7802 5.5375 3.5817 17 1 4.1740 5.1320 4.3918 18 7 6.2355 5.1069 3.5667 19 6 6.9472 4.2851 4.3991 20 1 7.9563 3.9987 4.1418 21 6 6.3719 3.8201 5.5737 22 7 6.8668 2.7581 6.1734 23 14 4.8953 4.7016 6.3031 24 1 3.6494 4.1587 5.7046 25 1 4.8703 4.4922 7.7732 26 1 4.9924 6.1544 6.0117 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5140 0.8899 32 1 1.7687 2.0868 -0.8081 33 1 3.8954 1.4251 2.7762 34 1 2.4142 0.4610 2.5649 35 1 3.8584 0.0988 1.5896 36 1 4.2716 3.0929 2.7522 37 1 5.4450 6.1459 0.5455 38 1 5.9728 4.4579 0.8328 39 1 6.9570 7.8328 3.3136 40 1 5.9691 7.8951 1.8183 41 1 5.0400 7.4810 4.5656 42 1 4.0520 7.5432 3.0704 43 1 6.4645 2.4330 6.9940 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110345638.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:26 Heat of formation + Delta-G solvation = 22.781451 kcal Electronic energy + Delta-G solvation = -22678.426628 eV Core-core repulsion = 19532.203348 eV Total energy + Delta-G solvation = -3146.223280 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.03610 -38.73643 -35.99779 -33.88562 -32.63001 -31.72625 -29.70020 -29.22325 -28.22389 -26.88338 -24.36511 -23.91374 -21.96599 -20.46274 -20.25869 -18.92774 -18.26181 -17.09422 -17.02062 -16.22404 -15.38782 -14.91828 -14.38270 -14.18075 -14.15671 -13.69401 -13.45554 -13.29523 -12.89125 -12.72904 -12.52231 -12.29898 -12.25737 -11.73307 -11.54956 -11.45713 -11.34339 -11.13949 -11.01436 -10.91478 -10.87544 -10.38582 -10.30866 -9.91767 -9.64486 -9.36899 -9.31377 -8.99266 -8.93518 -8.48600 -7.30580 -5.97260 -3.23736 1.51714 3.20841 3.39087 3.42422 3.57834 3.62134 4.45534 4.57895 4.78298 4.89915 5.06648 5.10734 5.16784 5.25278 5.32154 5.34793 5.49717 5.59266 5.62422 5.68527 5.71769 5.73074 5.79112 5.86056 5.93274 5.95840 6.00570 6.05315 6.07294 6.18673 6.21904 6.41407 6.48506 6.51990 6.63259 6.67476 6.75411 6.85635 7.06502 7.28648 8.02299 8.25760 8.62905 8.64988 9.58128 10.19423 11.19380 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017678 B = 0.005942 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.505402 B = 4710.885244 C = 5588.366517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.084 4.084 4 C -0.176 4.176 5 C -0.119 4.119 6 C 0.549 3.451 7 O -0.559 6.559 8 N -0.702 5.702 9 C 0.134 3.866 10 H 0.082 0.918 11 C -0.135 4.135 12 C 0.140 3.860 13 H 0.095 0.905 14 C -0.133 4.133 15 C -0.132 4.132 16 C 0.108 3.892 17 H 0.096 0.904 18 N -0.608 5.608 19 C -0.219 4.219 20 H 0.100 0.900 21 C 0.014 3.986 22 N -0.915 5.915 23 Si 0.873 3.127 24 H -0.289 1.289 25 H -0.304 1.304 26 H -0.265 1.265 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.124 0.876 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.408 0.592 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.763 -1.103 -9.909 13.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.104 4.104 4 C -0.179 4.179 5 C -0.176 4.176 6 C 0.337 3.663 7 O -0.440 6.440 8 N -0.352 5.352 9 C 0.028 3.972 10 H 0.100 0.900 11 C -0.175 4.175 12 C 0.033 3.967 13 H 0.113 0.887 14 C -0.172 4.172 15 C -0.172 4.172 16 C 0.001 3.999 17 H 0.113 0.887 18 N -0.332 5.332 19 C -0.346 4.346 20 H 0.117 0.883 21 C -0.183 4.183 22 N -0.560 5.560 23 Si 0.706 3.294 24 H -0.218 1.218 25 H -0.232 1.232 26 H -0.190 1.190 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.142 0.858 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.245 0.755 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.870 -0.790 -10.183 13.527 hybrid contribution -0.655 0.225 0.992 1.209 sum -9.525 -0.565 -9.191 13.248 Atomic orbital electron populations 1.21679 0.94644 1.01723 1.02290 1.20802 0.96355 0.93877 1.03240 1.23468 0.93440 0.96955 0.96510 1.21557 1.02745 0.93971 0.99654 1.20844 1.01348 0.98275 0.97159 1.18365 0.78246 0.88138 0.81522 1.90719 1.56393 1.57206 1.39649 1.45987 1.50224 1.11246 1.27789 1.22427 0.96079 0.81239 0.97477 0.90035 1.23349 0.95967 1.00931 0.97298 1.22939 0.96498 0.89624 0.87661 0.88709 1.22996 0.97289 0.98212 0.98746 1.22969 0.97558 0.96181 1.00446 1.23842 0.88160 0.93683 0.94190 0.88693 1.47290 1.03565 1.52636 1.29676 1.18692 0.98702 1.18076 0.99105 0.88273 1.24698 0.98118 0.97849 0.97632 1.69788 1.43369 1.22298 1.20574 0.87133 0.82665 0.81755 0.77859 1.21823 1.23245 1.19046 0.92486 0.92494 0.92335 0.90531 0.90481 0.85834 0.91224 0.91088 0.90838 0.75481 0.91835 0.91706 0.92105 0.92238 0.91356 0.92103 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.89 37.16 0.37 -0.88 16 2 C -0.11 -1.01 6.22 -27.88 -0.17 -1.19 16 3 C -0.08 -1.07 9.08 -36.13 -0.33 -1.40 16 4 C -0.18 -2.61 5.99 -102.85 -0.62 -3.22 16 5 C -0.12 -1.57 8.53 36.00 0.31 -1.26 16 6 C 0.55 9.95 7.75 -12.66 -0.10 9.85 16 7 O -0.56 -11.42 15.95 5.27 0.08 -11.34 16 8 N -0.70 -13.15 5.08 -52.33 -0.27 -13.42 16 9 C 0.13 2.54 2.73 -65.18 -0.18 2.36 16 10 H 0.08 1.52 7.39 -51.93 -0.38 1.14 16 11 C -0.14 -2.41 6.21 -24.24 -0.15 -2.56 16 12 C 0.14 2.62 5.43 -62.81 -0.34 2.28 16 13 H 0.09 1.70 8.14 -51.93 -0.42 1.27 16 14 C -0.13 -2.21 6.45 -24.24 -0.16 -2.37 16 15 C -0.13 -2.37 6.29 -24.24 -0.15 -2.52 16 16 C 0.11 2.22 3.24 -61.65 -0.20 2.02 16 17 H 0.10 2.13 3.23 -51.93 -0.17 1.96 16 18 N -0.61 -13.75 2.91 -144.36 -0.42 -14.17 16 19 C -0.22 -5.86 10.97 -15.06 -0.17 -6.02 16 20 H 0.10 2.83 8.06 -52.48 -0.42 2.41 16 21 C 0.01 0.40 5.50 -17.43 -0.10 0.30 16 22 N -0.92 -27.08 13.97 55.49 0.78 -26.30 16 23 Si 0.87 21.46 24.61 -169.99 -4.18 17.28 16 24 H -0.29 -6.90 6.58 56.52 0.37 -6.53 16 25 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 26 H -0.26 -6.26 5.21 56.52 0.29 -5.96 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.71 5.86 -51.93 -0.30 0.41 16 32 H 0.12 1.67 7.51 -52.49 -0.39 1.27 16 33 H 0.07 1.04 5.84 -51.93 -0.30 0.74 16 34 H 0.07 0.82 7.55 -51.93 -0.39 0.42 16 35 H 0.07 0.86 8.00 -51.93 -0.42 0.44 16 36 H 0.41 7.87 6.39 -40.82 -0.26 7.61 16 37 H 0.06 1.02 7.80 -51.92 -0.40 0.62 16 38 H 0.06 1.22 7.98 -51.93 -0.41 0.80 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.84 7.81 -51.93 -0.41 0.44 16 41 H 0.07 1.29 6.77 -51.92 -0.35 0.94 16 42 H 0.06 0.95 7.86 -51.93 -0.41 0.54 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 330.89 15.07 4.99 4.99 Total: -1.00 -30.51 330.89 -7.84 -38.35 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -6.84 Total: 9.23 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -1.98 Total: -4.62 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: 0.09 Total: -53.89 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.08 Total: -11.34 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.18 Total: 17.28 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.51 -7.84 -38.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110345638.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.130 kcal (2) G-P(sol) polarization free energy of solvation -30.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds