Wall clock time and date at job start Tue Mar 31 2020 00:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47225 * 2 1 4 4 C 1.33003 * 119.99453 * 120.21026 * 3 2 1 5 5 C 1.50697 * 120.00057 * 5.73847 * 4 3 2 6 6 C 1.47101 * 119.99549 * 185.73355 * 4 3 2 7 7 O 1.21608 * 120.00483 * 0.02562 * 6 4 3 8 8 N 1.34782 * 119.99457 * 180.02562 * 6 4 3 9 9 C 1.46507 * 119.99381 * 179.97438 * 8 6 4 10 10 H 1.09002 * 110.68201 * 36.53817 * 9 8 6 11 11 C 1.54845 * 110.62728 * 273.54372 * 9 8 6 12 12 C 1.55839 * 103.58916 * 241.59284 * 11 9 8 13 13 H 1.09004 * 115.56168 * 158.73431 * 12 11 9 14 14 C 1.55842 * 105.06514 * 287.34412 * 12 11 9 15 15 C 1.54856 * 103.44375 * 71.82452 * 14 12 11 16 16 C 1.55838 * 103.44581 * 0.02562 * 15 14 12 17 17 H 1.08997 * 115.56302 * 158.81020 * 16 15 14 18 18 N 1.50233 * 101.05215 * 32.86357 * 12 11 9 19 19 C 1.36930 * 130.84292 * 126.01039 * 18 12 11 20 20 H 1.08003 * 119.99730 * 351.07401 * 19 18 12 21 21 C 1.38809 * 120.00376 * 171.07227 * 19 18 12 22 22 N 1.31622 * 120.00279 * 160.43651 * 21 19 18 23 23 Si 1.86804 * 119.99803 * 340.44111 * 21 19 18 24 24 H 1.48500 * 109.47147 * 87.36665 * 23 21 19 25 25 H 1.48506 * 109.47003 * 207.36528 * 23 21 19 26 26 H 1.48500 * 109.47034 * 327.36157 * 23 21 19 27 27 H 1.09006 * 109.46812 * 299.99765 * 1 2 3 28 28 H 1.08999 * 109.47202 * 59.99088 * 1 2 3 29 29 H 1.08997 * 109.47616 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46812 * 240.00235 * 2 1 3 31 31 H 1.08999 * 109.47202 * 120.00912 * 2 1 3 32 32 H 1.07989 * 120.00544 * 300.21093 * 3 2 1 33 33 H 1.09005 * 109.47064 * 179.48276 * 5 4 3 34 34 H 1.09002 * 109.46910 * 299.47593 * 5 4 3 35 35 H 1.08994 * 109.47771 * 59.47409 * 5 4 3 36 36 H 0.96992 * 120.00533 * 0.02562 * 8 6 4 37 37 H 1.09009 * 110.62607 * 123.02273 * 11 9 8 38 38 H 1.09000 * 110.62523 * 0.16793 * 11 9 8 39 39 H 1.09006 * 110.62736 * 190.31502 * 14 12 11 40 40 H 1.09003 * 110.62953 * 313.33548 * 14 12 11 41 41 H 1.09007 * 110.62338 * 118.48895 * 15 14 12 42 42 H 1.09000 * 110.62743 * 241.50711 * 15 14 12 43 43 H 0.96997 * 119.99895 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.8004 1.8544 0.9955 5 6 3.2750 0.8933 2.0547 6 6 3.1868 3.2722 1.0623 7 8 2.8036 4.0479 0.2077 8 7 3.9656 3.7116 2.0708 9 6 4.3508 5.1235 2.1370 10 1 3.5346 5.7616 1.7982 11 6 5.6278 5.3804 1.2997 12 6 6.6611 5.8827 2.3526 13 1 7.7087 5.7834 2.0681 14 6 6.1978 7.3249 2.7188 15 6 4.9162 7.0897 3.5557 16 6 4.7802 5.5375 3.5817 17 1 4.1740 5.1320 4.3918 18 7 6.2355 5.1069 3.5667 19 6 6.9472 4.2851 4.3991 20 1 7.9563 3.9987 4.1418 21 6 6.3719 3.8201 5.5737 22 7 6.8668 2.7581 6.1734 23 14 4.8953 4.7016 6.3031 24 1 3.6494 4.1587 5.7046 25 1 4.8703 4.4922 7.7732 26 1 4.9924 6.1544 6.0117 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5140 0.8899 32 1 1.7687 2.0868 -0.8081 33 1 3.8954 1.4251 2.7762 34 1 2.4142 0.4610 2.5649 35 1 3.8584 0.0988 1.5896 36 1 4.2716 3.0929 2.7522 37 1 5.4450 6.1459 0.5455 38 1 5.9728 4.4579 0.8328 39 1 6.9570 7.8328 3.3136 40 1 5.9691 7.8951 1.8183 41 1 5.0400 7.4810 4.5656 42 1 4.0520 7.5432 3.0704 43 1 6.4645 2.4330 6.9940 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110345638.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:25 Heat of formation + Delta-G solvation = 3.634020 kcal Electronic energy + Delta-G solvation = -22679.256923 eV Core-core repulsion = 19532.203348 eV Total energy + Delta-G solvation = -3147.053575 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.51467 -40.17233 -37.04551 -35.37863 -34.61348 -32.67885 -31.52168 -30.72342 -29.65196 -27.91528 -25.98715 -25.23447 -23.17858 -22.06226 -21.66102 -20.44689 -19.55613 -18.93512 -18.28703 -17.72110 -17.02728 -16.24238 -15.78913 -15.52936 -15.38216 -15.07785 -14.98793 -14.76682 -14.30490 -13.96593 -13.88879 -13.49656 -13.26878 -13.09307 -13.00025 -12.92958 -12.81088 -12.71522 -12.42374 -12.19498 -11.96944 -11.89616 -11.70701 -11.50044 -11.27138 -11.15401 -10.91752 -10.77629 -10.17940 -9.86177 -9.22541 -8.10743 -5.32081 0.36889 1.23576 1.38134 1.45396 2.24620 2.25849 2.41692 2.90436 3.16388 3.67210 3.74597 3.81947 3.92367 4.01294 4.16644 4.23697 4.24673 4.28154 4.44644 4.46758 4.47613 4.60322 4.66099 4.67584 4.73176 4.74402 4.77048 5.02566 5.03926 5.04175 5.10480 5.13898 5.21376 5.31699 5.33133 5.38848 5.52415 5.53942 5.56429 5.68595 6.13781 6.55552 6.61505 7.19627 7.49381 8.23691 9.09585 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017678 B = 0.005942 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.505402 B = 4710.885244 C = 5588.366517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.105 4.105 3 C -0.057 4.057 4 C -0.206 4.206 5 C -0.112 4.112 6 C 0.546 3.454 7 O -0.587 6.587 8 N -0.709 5.709 9 C 0.136 3.864 10 H 0.090 0.910 11 C -0.124 4.124 12 C 0.134 3.866 13 H 0.098 0.902 14 C -0.122 4.122 15 C -0.130 4.130 16 C 0.099 3.901 17 H 0.077 0.923 18 N -0.628 5.628 19 C -0.199 4.199 20 H 0.068 0.932 21 C -0.040 4.040 22 N -0.962 5.962 23 Si 0.929 3.071 24 H -0.282 1.282 25 H -0.319 1.319 26 H -0.249 1.249 27 H 0.047 0.953 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.044 0.956 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.403 0.597 37 H 0.090 0.910 38 H 0.049 0.951 39 H 0.061 0.939 40 H 0.095 0.905 41 H 0.058 0.942 42 H 0.091 0.909 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.454 -0.289 -11.675 15.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.141 4.141 3 C -0.077 4.077 4 C -0.208 4.208 5 C -0.168 4.168 6 C 0.337 3.663 7 O -0.470 6.470 8 N -0.358 5.358 9 C 0.029 3.971 10 H 0.108 0.892 11 C -0.164 4.164 12 C 0.028 3.972 13 H 0.116 0.884 14 C -0.160 4.160 15 C -0.169 4.169 16 C -0.007 4.007 17 H 0.094 0.906 18 N -0.353 5.353 19 C -0.327 4.327 20 H 0.086 0.914 21 C -0.234 4.234 22 N -0.611 5.611 23 Si 0.762 3.238 24 H -0.211 1.211 25 H -0.249 1.249 26 H -0.173 1.173 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.102 0.898 32 H 0.134 0.866 33 H 0.063 0.937 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.239 0.761 37 H 0.108 0.892 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.113 0.887 41 H 0.076 0.924 42 H 0.110 0.890 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.577 0.072 -11.995 15.993 hybrid contribution -0.117 -0.062 1.376 1.383 sum -10.695 0.010 -10.619 15.071 Atomic orbital electron populations 1.21682 0.93580 1.02931 1.02027 1.20905 0.97094 0.91650 1.04499 1.23747 0.90825 0.98440 0.94703 1.21496 1.05143 0.92572 1.01627 1.20800 1.01713 0.97988 0.96345 1.18866 0.77403 0.89399 0.80680 1.90687 1.57530 1.58277 1.40505 1.46090 1.50536 1.11204 1.27995 1.22430 0.96690 0.81595 0.96348 0.89235 1.23270 0.94942 1.00996 0.97237 1.23198 0.97162 0.90718 0.86140 0.88381 1.22940 0.96477 0.96644 0.99987 1.22987 0.99504 0.93752 1.00639 1.23984 0.86486 0.95638 0.94578 0.90588 1.47335 1.04860 1.53016 1.30070 1.18559 0.97584 1.17482 0.99116 0.91389 1.25208 1.01104 0.98602 0.98446 1.69917 1.45708 1.24240 1.21247 0.86213 0.80180 0.81556 0.75859 1.21073 1.24920 1.17306 0.93348 0.92218 0.90437 0.88598 0.89815 0.86625 0.93690 0.89453 0.89475 0.76058 0.89195 0.93239 0.92066 0.88665 0.92366 0.89012 0.93264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 9.89 71.98 0.71 -1.36 16 2 C -0.10 -1.71 6.22 29.85 0.19 -1.52 16 3 C -0.06 -1.36 9.08 24.52 0.22 -1.14 16 4 C -0.21 -5.90 5.99 -18.70 -0.11 -6.01 16 5 C -0.11 -2.85 8.53 71.23 0.61 -2.25 16 6 C 0.55 19.54 7.75 86.57 0.67 20.21 16 7 O -0.59 -23.50 15.95 -4.06 -0.06 -23.56 16 8 N -0.71 -26.38 5.08 -437.72 -2.22 -28.60 16 9 C 0.14 4.92 2.73 46.77 0.13 5.04 16 10 H 0.09 3.12 7.39 -2.39 -0.02 3.10 16 11 C -0.12 -4.18 6.21 32.21 0.20 -3.98 16 12 C 0.13 4.76 5.43 46.23 0.25 5.01 16 13 H 0.10 3.39 8.14 -2.38 -0.02 3.37 16 14 C -0.12 -3.61 6.45 32.21 0.21 -3.41 16 15 C -0.13 -4.24 6.29 32.21 0.20 -4.04 16 16 C 0.10 3.92 3.24 46.08 0.15 4.07 16 17 H 0.08 3.32 3.23 -2.39 -0.01 3.31 16 18 N -0.63 -28.14 2.91 -610.64 -1.77 -29.91 16 19 C -0.20 -10.89 10.97 84.03 0.92 -9.97 16 20 H 0.07 4.05 8.06 -2.91 -0.02 4.03 16 21 C -0.04 -2.29 5.50 84.86 0.47 -1.82 16 22 N -0.96 -59.11 13.97 21.65 0.30 -58.81 16 23 Si 0.93 45.26 24.61 68.60 1.69 46.94 16 24 H -0.28 -13.21 6.58 99.48 0.65 -12.56 16 25 H -0.32 -16.21 7.11 99.48 0.71 -15.51 16 26 H -0.25 -11.26 5.21 99.48 0.52 -10.74 16 27 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.08 0.84 8.14 -2.39 -0.02 0.83 16 30 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.08 1.30 5.86 -2.39 -0.01 1.29 16 32 H 0.12 2.95 7.51 -2.92 -0.02 2.93 16 33 H 0.04 1.37 5.84 -2.38 -0.01 1.35 16 34 H 0.09 1.89 7.55 -2.39 -0.02 1.87 16 35 H 0.09 1.93 8.00 -2.39 -0.02 1.91 16 36 H 0.40 15.84 6.39 -92.71 -0.59 15.25 16 37 H 0.09 2.57 7.80 -2.38 -0.02 2.55 16 38 H 0.05 1.81 7.98 -2.39 -0.02 1.79 16 39 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.09 2.21 7.81 -2.39 -0.02 2.19 16 41 H 0.06 2.03 6.77 -2.38 -0.02 2.01 16 42 H 0.09 2.45 7.86 -2.39 -0.02 2.44 16 43 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -67.47 330.89 2.91 -64.56 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: 0.17 Total: 30.55 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: 4.81 Total: -1.17 kcal Atomic # 7 Polarization: -113.63 SS G_CDS: -3.70 Total: -117.33 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -0.06 Total: -23.56 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.69 Total: 46.94 kcal Total: -67.47 2.91 -64.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110345638.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.192 kcal (2) G-P(sol) polarization free energy of solvation -67.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds