Wall clock time and date at job start Tue Mar 31 2020 00:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47257 * 2 1 4 4 C 1.32996 * 120.00394 * 125.43165 * 3 2 1 5 5 C 1.50696 * 120.00095 * 185.66205 * 4 3 2 6 6 C 1.47101 * 119.99734 * 5.66222 * 4 3 2 7 7 O 1.21617 * 119.99797 * 255.47334 * 6 4 3 8 8 N 1.34776 * 120.00501 * 75.47751 * 6 4 3 9 9 C 1.46493 * 120.00390 * 179.97438 * 8 6 4 10 10 H 1.09001 * 110.55940 * 32.10588 * 9 8 6 11 11 C 1.56681 * 110.88825 * 269.36379 * 9 8 6 12 12 C 1.55844 * 102.60089 * 241.63763 * 11 9 8 13 13 H 1.08992 * 115.56447 * 159.09145 * 12 11 9 14 14 C 1.55849 * 105.06155 * 287.69598 * 12 11 9 15 15 C 1.54857 * 103.44483 * 72.57385 * 14 12 11 16 16 C 1.55839 * 103.44515 * 0.02562 * 15 14 12 17 17 H 1.09002 * 115.55950 * 158.80758 * 16 15 14 18 18 N 1.50235 * 101.75147 * 32.68896 * 12 11 9 19 19 C 1.36937 * 130.83404 * 125.84712 * 18 12 11 20 20 H 1.07997 * 120.00049 * 180.02562 * 19 18 12 21 21 C 1.38810 * 120.00363 * 0.02562 * 19 18 12 22 22 N 1.31622 * 119.99670 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00334 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46770 * 59.99738 * 23 21 19 25 25 H 1.48499 * 109.46818 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.46668 * 299.99458 * 23 21 19 27 27 H 1.09001 * 109.47150 * 300.00301 * 1 2 3 28 28 H 1.08994 * 109.46860 * 60.00152 * 1 2 3 29 29 H 1.08997 * 109.46966 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47378 * 239.99187 * 2 1 3 31 31 H 1.09009 * 109.47158 * 119.99410 * 2 1 3 32 32 H 1.07998 * 119.99507 * 305.42690 * 3 2 1 33 33 H 1.09000 * 109.47202 * 269.99651 * 5 4 3 34 34 H 1.08999 * 109.46812 * 29.99800 * 5 4 3 35 35 H 1.08998 * 109.47190 * 149.99569 * 5 4 3 36 36 H 0.97001 * 119.99643 * 359.97438 * 8 6 4 37 37 H 1.09004 * 110.79181 * 123.53467 * 11 9 8 38 38 H 1.09006 * 111.26311 * 359.94984 * 11 9 8 39 39 H 1.08999 * 110.62865 * 191.06817 * 14 12 11 40 40 H 1.09005 * 110.62652 * 314.08777 * 14 12 11 41 41 H 1.09003 * 110.62112 * 118.49190 * 15 14 12 42 42 H 1.08993 * 110.63047 * 241.50632 * 15 14 12 43 43 H 0.97000 * 119.99798 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8836 1.8253 0.9384 5 6 3.2869 3.2752 1.0156 6 6 3.4314 0.8572 1.9011 7 8 3.0153 0.8339 3.0436 8 7 4.3944 -0.0039 1.5170 9 6 4.9403 -0.9676 2.4758 10 1 4.1763 -1.2694 3.1923 11 6 6.1821 -0.3709 3.2220 12 6 7.3270 -1.3440 2.8086 13 1 8.3382 -0.9497 2.9081 14 6 7.0397 -2.6622 3.5889 15 6 5.8087 -3.2523 2.8578 16 6 5.5204 -2.2107 1.7351 17 1 4.9402 -2.5795 0.8892 18 7 6.9097 -1.7350 1.4194 19 6 7.5874 -1.6761 0.2309 20 1 7.1110 -2.0089 -0.6794 21 6 8.8866 -1.1887 0.1962 22 7 9.4670 -0.7826 1.3055 23 14 9.8109 -1.1077 -1.4252 24 1 9.0739 -0.2326 -2.3718 25 1 11.1687 -0.5530 -1.1937 26 1 9.9244 -2.4727 -1.9988 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8898 31 1 1.8934 -0.5138 0.8901 32 1 1.7012 2.1106 -0.7622 33 1 4.1713 3.4396 0.4001 34 1 2.4703 3.8992 0.6524 35 1 3.5107 3.5355 2.0501 36 1 4.7260 0.0144 0.6056 37 1 6.0315 -0.3915 4.3014 38 1 6.3980 0.6422 2.8826 39 1 7.8891 -3.3418 3.5207 40 1 6.8011 -2.4475 4.6306 41 1 6.0478 -4.2246 2.4270 42 1 4.9598 -3.3304 3.5369 43 1 10.3748 -0.4416 1.2812 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110345639.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:29 Heat of formation + Delta-G solvation = 8.149796 kcal Electronic energy + Delta-G solvation = -22710.809062 eV Core-core repulsion = 19563.951305 eV Total energy + Delta-G solvation = -3146.857756 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.85976 -38.51446 -35.61510 -33.64133 -32.52131 -32.17083 -29.12510 -28.80635 -27.77849 -26.91141 -24.27145 -23.31042 -22.06425 -20.71520 -19.78445 -18.95173 -18.34075 -17.00311 -16.16980 -15.70621 -15.37412 -14.82545 -14.43358 -14.07267 -13.85590 -13.57251 -13.31827 -12.98563 -12.91185 -12.75578 -12.25888 -12.06391 -11.98716 -11.80280 -11.22362 -11.12889 -11.08031 -11.00783 -10.95432 -10.89629 -10.52896 -10.35039 -10.13152 -9.91200 -9.70198 -9.24221 -9.13984 -8.96940 -8.86171 -8.40568 -6.95607 -5.75227 -3.14569 1.82975 3.01485 3.35368 3.39998 3.41486 3.75728 4.39733 4.71547 4.97441 5.11239 5.13920 5.25615 5.34890 5.41269 5.42555 5.62160 5.64051 5.69647 5.73057 5.80640 5.88000 5.91827 6.03150 6.05347 6.11330 6.12745 6.14649 6.31285 6.41975 6.43470 6.51161 6.61220 6.64179 6.75801 6.82552 6.96011 7.14013 7.32987 7.45861 7.78446 8.03748 8.16685 8.65044 9.06216 9.69520 10.50864 11.33525 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015983 B = 0.005773 C = 0.005107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.477252 B = 4848.996688 C = 5481.171735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 C -0.123 4.123 4 C -0.158 4.158 5 C -0.105 4.105 6 C 0.552 3.448 7 O -0.553 6.553 8 N -0.698 5.698 9 C 0.127 3.873 10 H 0.078 0.922 11 C -0.142 4.142 12 C 0.153 3.847 13 H 0.152 0.848 14 C -0.139 4.139 15 C -0.128 4.128 16 C 0.126 3.874 17 H 0.087 0.913 18 N -0.589 5.589 19 C -0.215 4.215 20 H 0.077 0.923 21 C -0.009 4.009 22 N -0.919 5.919 23 Si 0.915 3.085 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.286 1.286 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.122 0.878 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.404 0.596 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.048 0.952 41 H 0.056 0.944 42 H 0.051 0.949 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.391 2.325 -1.541 12.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.143 4.143 3 C -0.141 4.141 4 C -0.161 4.161 5 C -0.162 4.162 6 C 0.339 3.661 7 O -0.432 6.432 8 N -0.346 5.346 9 C 0.021 3.979 10 H 0.096 0.904 11 C -0.183 4.183 12 C 0.046 3.954 13 H 0.169 0.831 14 C -0.178 4.178 15 C -0.168 4.168 16 C 0.017 3.983 17 H 0.105 0.895 18 N -0.310 5.310 19 C -0.343 4.343 20 H 0.095 0.905 21 C -0.205 4.205 22 N -0.567 5.567 23 Si 0.746 3.254 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.213 1.213 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.139 0.861 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.239 0.761 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.380 2.358 -0.921 12.636 hybrid contribution 0.648 0.073 -1.264 1.422 sum -11.732 2.432 -2.185 12.179 Atomic orbital electron populations 1.21663 0.94780 1.01762 1.01857 1.20749 0.96420 0.94083 1.03018 1.23281 0.96908 0.97700 0.96259 1.21638 1.00788 0.96667 0.97010 1.20663 1.01744 0.90657 1.03117 1.18415 0.79457 0.80688 0.87577 1.90765 1.61049 1.71478 1.19943 1.46063 1.37865 1.35168 1.15515 1.22996 0.94651 0.89551 0.90744 0.90364 1.23745 0.96492 1.00406 0.97616 1.23714 0.99111 0.90323 0.82206 0.83123 1.23075 0.96945 1.00434 0.97395 1.22887 0.97707 0.98579 0.97655 1.23154 0.88603 0.91887 0.94638 0.89466 1.46490 1.08917 1.71765 1.03847 1.18949 0.95093 1.35738 0.84532 0.90481 1.24695 0.96926 1.01688 0.97194 1.69459 1.13903 1.48358 1.24979 0.86150 0.79069 0.77648 0.82583 1.21309 1.21603 1.21290 0.92579 0.92660 0.92454 0.90562 0.91141 0.86062 0.90905 0.91350 0.91281 0.76150 0.92767 0.92224 0.92645 0.93344 0.92474 0.93026 0.93498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.89 37.16 0.37 -1.04 16 2 C -0.11 -1.23 6.18 -27.88 -0.17 -1.40 16 3 C -0.12 -1.45 9.20 -36.13 -0.33 -1.79 16 4 C -0.16 -2.24 5.74 -102.85 -0.59 -2.83 16 5 C -0.10 -1.27 10.03 36.00 0.36 -0.91 16 6 C 0.55 9.72 5.27 -12.67 -0.07 9.65 16 7 O -0.55 -11.59 16.75 5.26 0.09 -11.50 16 8 N -0.70 -12.32 5.08 -51.58 -0.26 -12.59 16 9 C 0.13 2.40 2.82 -64.40 -0.18 2.22 16 10 H 0.08 1.50 7.22 -51.93 -0.38 1.12 16 11 C -0.14 -2.94 6.36 -23.23 -0.15 -3.09 16 12 C 0.15 3.48 4.67 -62.80 -0.29 3.19 16 13 H 0.15 3.94 5.52 -51.93 -0.29 3.65 16 14 C -0.14 -2.76 6.44 -24.23 -0.16 -2.92 16 15 C -0.13 -2.34 6.44 -24.24 -0.16 -2.49 16 16 C 0.13 2.45 5.06 -62.79 -0.32 2.13 16 17 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 18 N -0.59 -13.86 2.99 -145.82 -0.44 -14.30 16 19 C -0.22 -5.58 10.59 -15.06 -0.16 -5.74 16 20 H 0.08 1.92 7.83 -52.49 -0.41 1.51 16 21 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 22 N -0.92 -25.62 10.47 55.49 0.58 -25.04 16 23 Si 0.91 21.26 29.55 -169.99 -5.02 16.23 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.99 6.32 -51.92 -0.33 0.66 16 32 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16 35 H 0.07 0.91 8.11 -51.93 -0.42 0.48 16 36 H 0.40 7.04 8.64 -40.82 -0.35 6.69 16 37 H 0.05 1.05 7.79 -51.93 -0.40 0.65 16 38 H 0.06 1.33 8.04 -51.93 -0.42 0.92 16 39 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.05 0.86 7.79 -51.93 -0.40 0.46 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.05 0.83 7.82 -51.93 -0.41 0.43 16 43 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 344.99 15.07 5.20 5.20 Total: -1.00 -29.45 344.99 -8.96 -38.41 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -7.17 Total: 8.93 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -1.94 Total: -5.35 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: -0.12 Total: -51.92 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.09 Total: -11.50 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.45 -8.96 -38.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110345639.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.560 kcal (2) G-P(sol) polarization free energy of solvation -29.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds