Wall clock time and date at job start Tue Mar 31 2020 00:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47257 * 2 1 4 4 C 1.32996 * 120.00394 * 125.43165 * 3 2 1 5 5 C 1.50696 * 120.00095 * 185.66205 * 4 3 2 6 6 C 1.47101 * 119.99734 * 5.66222 * 4 3 2 7 7 O 1.21617 * 119.99797 * 255.47334 * 6 4 3 8 8 N 1.34776 * 120.00501 * 75.47751 * 6 4 3 9 9 C 1.46493 * 120.00390 * 179.97438 * 8 6 4 10 10 H 1.09001 * 110.55940 * 32.10588 * 9 8 6 11 11 C 1.56681 * 110.88825 * 269.36379 * 9 8 6 12 12 C 1.55844 * 102.60089 * 241.63763 * 11 9 8 13 13 H 1.08992 * 115.56447 * 159.09145 * 12 11 9 14 14 C 1.55849 * 105.06155 * 287.69598 * 12 11 9 15 15 C 1.54857 * 103.44483 * 72.57385 * 14 12 11 16 16 C 1.55839 * 103.44515 * 0.02562 * 15 14 12 17 17 H 1.09002 * 115.55950 * 158.80758 * 16 15 14 18 18 N 1.50235 * 101.75147 * 32.68896 * 12 11 9 19 19 C 1.36937 * 130.83404 * 125.84712 * 18 12 11 20 20 H 1.07997 * 120.00049 * 180.02562 * 19 18 12 21 21 C 1.38810 * 120.00363 * 0.02562 * 19 18 12 22 22 N 1.31622 * 119.99670 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00334 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46770 * 59.99738 * 23 21 19 25 25 H 1.48499 * 109.46818 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.46668 * 299.99458 * 23 21 19 27 27 H 1.09001 * 109.47150 * 300.00301 * 1 2 3 28 28 H 1.08994 * 109.46860 * 60.00152 * 1 2 3 29 29 H 1.08997 * 109.46966 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.47378 * 239.99187 * 2 1 3 31 31 H 1.09009 * 109.47158 * 119.99410 * 2 1 3 32 32 H 1.07998 * 119.99507 * 305.42690 * 3 2 1 33 33 H 1.09000 * 109.47202 * 269.99651 * 5 4 3 34 34 H 1.08999 * 109.46812 * 29.99800 * 5 4 3 35 35 H 1.08998 * 109.47190 * 149.99569 * 5 4 3 36 36 H 0.97001 * 119.99643 * 359.97438 * 8 6 4 37 37 H 1.09004 * 110.79181 * 123.53467 * 11 9 8 38 38 H 1.09006 * 111.26311 * 359.94984 * 11 9 8 39 39 H 1.08999 * 110.62865 * 191.06817 * 14 12 11 40 40 H 1.09005 * 110.62652 * 314.08777 * 14 12 11 41 41 H 1.09003 * 110.62112 * 118.49190 * 15 14 12 42 42 H 1.08993 * 110.63047 * 241.50632 * 15 14 12 43 43 H 0.97000 * 119.99798 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8836 1.8253 0.9384 5 6 3.2869 3.2752 1.0156 6 6 3.4314 0.8572 1.9011 7 8 3.0153 0.8339 3.0436 8 7 4.3944 -0.0039 1.5170 9 6 4.9403 -0.9676 2.4758 10 1 4.1763 -1.2694 3.1923 11 6 6.1821 -0.3709 3.2220 12 6 7.3270 -1.3440 2.8086 13 1 8.3382 -0.9497 2.9081 14 6 7.0397 -2.6622 3.5889 15 6 5.8087 -3.2523 2.8578 16 6 5.5204 -2.2107 1.7351 17 1 4.9402 -2.5795 0.8892 18 7 6.9097 -1.7350 1.4194 19 6 7.5874 -1.6761 0.2309 20 1 7.1110 -2.0089 -0.6794 21 6 8.8866 -1.1887 0.1962 22 7 9.4670 -0.7826 1.3055 23 14 9.8109 -1.1077 -1.4252 24 1 9.0739 -0.2326 -2.3718 25 1 11.1687 -0.5530 -1.1937 26 1 9.9244 -2.4727 -1.9988 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8898 31 1 1.8934 -0.5138 0.8901 32 1 1.7012 2.1106 -0.7622 33 1 4.1713 3.4396 0.4001 34 1 2.4703 3.8992 0.6524 35 1 3.5107 3.5355 2.0501 36 1 4.7260 0.0144 0.6056 37 1 6.0315 -0.3915 4.3014 38 1 6.3980 0.6422 2.8826 39 1 7.8891 -3.3418 3.5207 40 1 6.8011 -2.4475 4.6306 41 1 6.0478 -4.2246 2.4270 42 1 4.9598 -3.3304 3.5369 43 1 10.3748 -0.4416 1.2812 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110345639.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:28 Heat of formation + Delta-G solvation = -8.630441 kcal Electronic energy + Delta-G solvation = -22711.536707 eV Core-core repulsion = 19563.951305 eV Total energy + Delta-G solvation = -3147.585402 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.34704 -40.03651 -36.70226 -35.21260 -34.36582 -33.10801 -30.97734 -30.41219 -29.35097 -27.84286 -26.14445 -24.58998 -23.08580 -22.17048 -21.50893 -20.52217 -19.77184 -18.83887 -17.48075 -17.12715 -16.73232 -16.49595 -15.83616 -15.68243 -15.13007 -14.97164 -14.64849 -14.23109 -13.95450 -13.76176 -13.66730 -13.63783 -13.31134 -12.92570 -12.88958 -12.82455 -12.78306 -12.65370 -12.13510 -11.99465 -11.98159 -11.90840 -11.88826 -11.69765 -11.24499 -10.96825 -10.91720 -10.64843 -9.94985 -9.86911 -8.86457 -7.74510 -5.14758 0.81216 1.50008 1.51655 1.57610 1.65735 2.41962 2.51509 3.38496 3.45254 3.71065 3.91167 4.00438 4.06988 4.15800 4.26251 4.41746 4.42596 4.46820 4.50161 4.57608 4.60894 4.68721 4.75262 4.79312 4.82576 4.89859 4.98940 5.07192 5.08958 5.15144 5.17872 5.19117 5.29970 5.37473 5.47276 5.51400 5.58813 5.66673 5.71444 5.89768 6.27529 6.62374 7.06580 7.25539 7.73558 8.59438 9.32534 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015983 B = 0.005773 C = 0.005107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.477252 B = 4848.996688 C = 5481.171735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.111 4.111 3 C -0.094 4.094 4 C -0.192 4.192 5 C -0.100 4.100 6 C 0.554 3.446 7 O -0.592 6.592 8 N -0.696 5.696 9 C 0.138 3.862 10 H 0.082 0.918 11 C -0.134 4.134 12 C 0.140 3.860 13 H 0.115 0.885 14 C -0.132 4.132 15 C -0.120 4.120 16 C 0.129 3.871 17 H 0.103 0.897 18 N -0.608 5.608 19 C -0.216 4.216 20 H 0.086 0.914 21 C -0.066 4.066 22 N -0.948 5.948 23 Si 0.974 3.026 24 H -0.278 1.278 25 H -0.301 1.301 26 H -0.282 1.282 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.156 0.844 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.049 0.951 36 H 0.405 0.595 37 H 0.065 0.935 38 H 0.033 0.967 39 H 0.039 0.961 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.080 0.920 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.615 2.038 -3.089 15.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.148 4.148 3 C -0.113 4.113 4 C -0.195 4.195 5 C -0.157 4.157 6 C 0.342 3.658 7 O -0.474 6.474 8 N -0.343 5.343 9 C 0.031 3.969 10 H 0.100 0.900 11 C -0.175 4.175 12 C 0.033 3.967 13 H 0.132 0.868 14 C -0.172 4.172 15 C -0.159 4.159 16 C 0.021 3.979 17 H 0.121 0.879 18 N -0.329 5.329 19 C -0.345 4.345 20 H 0.103 0.897 21 C -0.259 4.259 22 N -0.598 5.598 23 Si 0.804 3.196 24 H -0.205 1.205 25 H -0.228 1.228 26 H -0.208 1.208 27 H 0.065 0.935 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.061 0.939 32 H 0.173 0.827 33 H 0.093 0.907 34 H 0.115 0.885 35 H 0.068 0.932 36 H 0.240 0.760 37 H 0.084 0.916 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -14.637 2.058 -2.481 14.988 hybrid contribution 1.268 0.132 -0.778 1.494 sum -13.369 2.191 -3.260 13.934 Atomic orbital electron populations 1.21640 0.93151 1.02485 1.02393 1.20831 0.97814 0.93859 1.02304 1.23643 0.94266 0.98180 0.95199 1.21617 1.03121 0.96824 0.97930 1.20662 1.02976 0.89860 1.02185 1.18995 0.78615 0.80498 0.87648 1.90730 1.62257 1.72506 1.21902 1.46042 1.37904 1.35152 1.15250 1.22796 0.93740 0.89483 0.90868 0.89962 1.23620 0.96823 0.98536 0.98476 1.23542 0.98020 0.92174 0.82923 0.86774 1.22973 0.97312 0.98443 0.98453 1.22843 0.97706 0.97985 0.97402 1.23344 0.86716 0.92227 0.95583 0.87914 1.46662 1.10591 1.72190 1.03461 1.19319 0.95203 1.34179 0.85751 0.89655 1.25427 0.98068 1.02565 0.99815 1.69720 1.13562 1.49901 1.26603 0.85202 0.77295 0.77607 0.79504 1.20461 1.22769 1.20811 0.93544 0.90567 0.91772 0.89193 0.93873 0.82695 0.90652 0.88527 0.93161 0.75966 0.91622 0.94805 0.94222 0.91224 0.92067 0.90177 0.94535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.89 71.98 0.71 -1.62 16 2 C -0.11 -2.30 6.18 29.85 0.18 -2.12 16 3 C -0.09 -1.96 9.20 24.52 0.23 -1.74 16 4 C -0.19 -5.15 5.74 -18.71 -0.11 -5.26 16 5 C -0.10 -2.28 10.03 71.23 0.71 -1.57 16 6 C 0.55 19.30 5.27 86.57 0.46 19.75 16 7 O -0.59 -24.90 16.75 -4.08 -0.07 -24.97 16 8 N -0.70 -24.24 5.08 -435.36 -2.21 -26.45 16 9 C 0.14 5.11 2.82 47.28 0.13 5.25 16 10 H 0.08 3.04 7.22 -2.39 -0.02 3.02 16 11 C -0.13 -5.61 6.36 32.86 0.21 -5.40 16 12 C 0.14 6.48 4.67 46.23 0.22 6.70 16 13 H 0.11 6.24 5.52 -2.39 -0.01 6.23 16 14 C -0.13 -5.17 6.44 32.21 0.21 -4.96 16 15 C -0.12 -4.10 6.44 32.21 0.21 -3.89 16 16 C 0.13 4.81 5.06 46.25 0.23 5.04 16 17 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 18 N -0.61 -28.52 2.99 -615.24 -1.84 -30.36 16 19 C -0.22 -11.16 10.59 84.03 0.89 -10.27 16 20 H 0.09 4.16 7.83 -2.91 -0.02 4.14 16 21 C -0.07 -3.57 5.50 84.86 0.47 -3.11 16 22 N -0.95 -54.60 10.47 21.65 0.23 -54.37 16 23 Si 0.97 44.09 29.55 68.60 2.03 46.11 16 24 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 25 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 26 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.04 1.14 6.32 -2.38 -0.02 1.13 16 32 H 0.16 2.22 8.06 -2.91 -0.02 2.19 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 34 H 0.10 1.61 8.07 -2.39 -0.02 1.59 16 35 H 0.05 1.31 8.11 -2.39 -0.02 1.29 16 36 H 0.41 13.87 8.64 -92.71 -0.80 13.07 16 37 H 0.07 2.54 7.79 -2.38 -0.02 2.52 16 38 H 0.03 1.55 8.04 -2.38 -0.02 1.53 16 39 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.07 2.39 7.79 -2.38 -0.02 2.37 16 41 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.08 2.32 7.82 -2.39 -0.02 2.30 16 43 H 0.25 13.96 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -64.96 344.99 3.07 -61.89 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: 0.19 Total: 31.34 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: 4.75 Total: -3.19 kcal Atomic # 7 Polarization: -107.35 SS G_CDS: -3.83 Total: -111.18 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.07 Total: -24.97 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -64.96 3.07 -61.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110345639.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.259 kcal (2) G-P(sol) polarization free energy of solvation -64.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds