Wall clock time and date at job start Tue Mar 31 2020 00:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99639 * 2 1 4 4 C 1.52998 * 109.47136 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.46830 * 120.00254 * 3 2 1 6 6 C 1.50702 * 109.46864 * 240.00017 * 3 2 1 7 7 O 1.21282 * 120.00180 * 0.02562 * 6 3 2 8 8 N 1.34773 * 119.99740 * 180.02562 * 6 3 2 9 9 C 1.46504 * 119.99715 * 179.97438 * 8 6 3 10 10 H 1.08997 * 110.56218 * 34.29847 * 9 8 6 11 11 C 1.54849 * 110.62700 * 271.39620 * 9 8 6 12 12 C 1.55843 * 103.44861 * 241.51222 * 11 9 8 13 13 H 1.09001 * 115.56123 * 158.81552 * 12 11 9 14 14 C 1.55850 * 105.06331 * 288.17569 * 12 11 9 15 15 C 1.55167 * 103.49909 * 71.74104 * 14 12 11 16 16 C 1.55847 * 103.41613 * 0.06196 * 15 14 12 17 17 H 1.08999 * 116.12568 * 159.23147 * 16 15 14 18 18 N 1.50236 * 101.05225 * 32.93656 * 12 11 9 19 19 C 1.36938 * 130.83705 * 126.00740 * 18 12 11 20 20 H 1.08008 * 119.99638 * 185.40230 * 19 18 12 21 21 C 1.38811 * 120.00153 * 5.41261 * 19 18 12 22 22 N 1.31613 * 119.99776 * 9.27748 * 21 19 18 23 23 Si 1.86802 * 119.99834 * 189.28826 * 21 19 18 24 24 H 1.48500 * 109.47157 * 94.04320 * 23 21 19 25 25 H 1.48500 * 109.46582 * 214.04154 * 23 21 19 26 26 H 1.48504 * 109.46964 * 334.04005 * 23 21 19 27 27 H 1.08006 * 120.00004 * 180.02562 * 1 2 3 28 28 H 1.07995 * 120.00301 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.99889 * 180.02562 * 2 1 3 30 30 H 1.08995 * 109.47176 * 60.00095 * 4 3 2 31 31 H 1.09009 * 109.46912 * 179.97438 * 4 3 2 32 32 H 1.08994 * 109.47128 * 299.99473 * 4 3 2 33 33 H 1.08996 * 109.47448 * 59.99812 * 5 3 2 34 34 H 1.08999 * 109.46997 * 179.97438 * 5 3 2 35 35 H 1.08995 * 109.47171 * 299.99714 * 5 3 2 36 36 H 0.97002 * 120.00530 * 359.97438 * 8 6 3 37 37 H 1.09002 * 110.62942 * 0.02562 * 11 9 8 38 38 H 1.09006 * 110.62852 * 123.01874 * 11 9 8 39 39 H 1.09003 * 110.62668 * 190.31091 * 14 12 11 40 40 H 1.09001 * 110.62629 * 313.33608 * 14 12 11 41 41 H 1.08991 * 110.56871 * 241.61312 * 15 14 12 42 42 H 1.09004 * 110.84229 * 118.63711 * 15 14 12 43 43 H 0.97001 * 119.99817 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 1.0691 2.4680 0.0006 5 6 2.9431 1.3862 1.2492 6 6 2.9298 1.3850 -1.2305 7 8 2.9346 0.4722 -2.0291 8 7 3.6993 2.4707 -1.4435 9 6 4.5420 2.5481 -2.6395 10 1 4.0551 2.0589 -3.4831 11 6 5.9304 1.9175 -2.3702 12 6 6.9158 3.1057 -2.5843 13 1 7.8918 2.9984 -2.1110 14 6 6.9227 3.3540 -4.1229 15 6 5.5310 3.9840 -4.3944 16 6 4.8739 4.0318 -2.9821 17 1 4.0530 4.7381 -2.8582 18 7 6.0810 4.2613 -2.1100 19 6 6.3377 5.2264 -1.1730 20 1 5.5687 5.9352 -0.9033 21 6 7.5862 5.2938 -0.5701 22 7 8.5766 4.5551 -1.0235 23 14 7.8604 6.4327 0.8850 24 1 7.6611 5.6783 2.1485 25 1 9.2451 6.9674 0.8408 26 1 6.8930 7.5576 0.8222 27 1 -0.5400 -0.9354 0.0004 28 1 -0.5400 0.9352 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 0.4429 2.4100 0.8908 31 1 1.6142 3.4120 0.0011 32 1 0.4422 2.4105 -0.8891 33 1 3.6514 0.5577 1.2492 34 1 3.4884 2.3299 1.2490 35 1 2.3165 1.3284 2.1392 36 1 3.6952 3.2010 -0.8051 37 1 5.9919 1.5468 -1.3470 38 1 6.1333 1.1173 -3.0820 39 1 7.7187 4.0467 -4.3965 40 1 7.0284 2.4132 -4.6631 41 1 4.9499 3.3534 -5.0672 42 1 5.6334 4.9888 -4.8044 43 1 9.4490 4.6019 -0.6019 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110897200.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:35 Heat of formation + Delta-G solvation = 20.563530 kcal Electronic energy + Delta-G solvation = -22960.172640 eV Core-core repulsion = 19813.853183 eV Total energy + Delta-G solvation = -3146.319456 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.12293 -38.73875 -36.08127 -33.81129 -32.53466 -30.82622 -29.10501 -28.79139 -27.61731 -27.40894 -24.30324 -23.86584 -21.69603 -20.12822 -19.83469 -18.81368 -18.17913 -17.00022 -16.70521 -16.04602 -15.17078 -14.86770 -14.59658 -14.19404 -13.99877 -13.71620 -13.49816 -12.87112 -12.47059 -12.32003 -12.07213 -12.03308 -11.86323 -11.81079 -11.28356 -11.16338 -11.10151 -10.95783 -10.90013 -10.73299 -10.49438 -10.35521 -10.09874 -9.94307 -9.65874 -9.47597 -9.25138 -8.99716 -8.89893 -8.44125 -6.95486 -5.78742 -3.14566 2.27238 3.01584 3.34295 3.39377 3.42187 3.72240 4.38924 4.60491 4.81904 4.98063 5.11330 5.17625 5.33139 5.37172 5.51560 5.63863 5.64365 5.69336 5.75448 5.78687 5.87204 5.90358 6.05837 6.10529 6.14067 6.15590 6.18236 6.30799 6.42473 6.48618 6.60431 6.61709 6.75668 6.76640 6.82465 6.95299 7.14589 7.32512 7.45750 7.76644 8.03410 8.11687 8.66510 9.03396 9.67785 10.50546 11.32356 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017830 B = 0.005938 C = 0.004924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.005669 B = 4714.440147 C = 5685.612270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.058 4.058 4 C -0.142 4.142 5 C -0.137 4.137 6 C 0.522 3.478 7 O -0.550 6.550 8 N -0.704 5.704 9 C 0.130 3.870 10 H 0.078 0.922 11 C -0.145 4.145 12 C 0.158 3.842 13 H 0.145 0.855 14 C -0.134 4.134 15 C -0.128 4.128 16 C 0.124 3.876 17 H 0.088 0.912 18 N -0.590 5.590 19 C -0.216 4.216 20 H 0.078 0.922 21 C -0.008 4.008 22 N -0.916 5.916 23 Si 0.911 3.089 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.401 0.599 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.047 0.953 41 H 0.050 0.950 42 H 0.057 0.943 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.819 -4.672 1.197 12.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.132 4.132 3 C -0.062 4.062 4 C -0.200 4.200 5 C -0.195 4.195 6 C 0.307 3.693 7 O -0.428 6.428 8 N -0.353 5.353 9 C 0.024 3.976 10 H 0.096 0.904 11 C -0.185 4.185 12 C 0.051 3.949 13 H 0.162 0.838 14 C -0.174 4.174 15 C -0.168 4.168 16 C 0.016 3.984 17 H 0.106 0.894 18 N -0.311 5.311 19 C -0.344 4.344 20 H 0.095 0.905 21 C -0.205 4.205 22 N -0.563 5.563 23 Si 0.742 3.258 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 H 0.115 0.885 28 H 0.120 0.880 29 H 0.130 0.870 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.236 0.764 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.596 -5.124 0.835 12.705 hybrid contribution 0.213 0.875 0.972 1.325 sum -11.383 -4.249 1.807 12.284 Atomic orbital electron populations 1.23899 0.95869 1.01952 1.02284 1.22530 0.95542 0.96832 0.98302 1.19921 0.95815 0.95549 0.94875 1.21934 0.98714 0.96738 1.02569 1.21807 0.99098 1.03213 0.95333 1.20297 0.79928 0.82334 0.86724 1.90648 1.67158 1.37915 1.47101 1.46019 1.43303 1.20269 1.25689 1.22613 0.90335 0.98430 0.86233 0.90443 1.23470 0.95892 0.98685 1.00461 1.23542 0.96873 0.84138 0.90311 0.83808 1.23070 0.96077 0.98589 0.99656 1.22908 0.97345 0.99838 0.96679 1.23245 0.91605 0.92477 0.91110 0.89445 1.46646 1.13229 1.29220 1.42035 1.18994 0.96675 1.06942 1.11807 0.90450 1.24700 0.95317 1.00164 1.00288 1.69613 1.01415 1.43429 1.41846 0.86106 0.77228 0.79888 0.82550 1.21732 1.21809 1.20725 0.88525 0.88015 0.87044 0.91323 0.91639 0.91900 0.91937 0.91284 0.91583 0.76359 0.92383 0.92778 0.92395 0.93460 0.93087 0.92447 0.93594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.20 13.70 29.01 0.40 -1.80 16 2 C -0.11 -1.45 8.00 -36.03 -0.29 -1.74 16 3 C -0.06 -0.76 0.84 -156.81 -0.13 -0.89 16 4 C -0.14 -1.54 7.02 37.16 0.26 -1.27 16 5 C -0.14 -1.66 8.35 37.16 0.31 -1.35 16 6 C 0.52 8.76 6.47 -10.99 -0.07 8.69 16 7 O -0.55 -11.11 15.72 5.56 0.09 -11.02 16 8 N -0.70 -11.92 4.87 -51.40 -0.25 -12.17 16 9 C 0.13 2.42 2.75 -65.43 -0.18 2.24 16 10 H 0.08 1.47 7.29 -51.93 -0.38 1.09 16 11 C -0.14 -2.94 6.23 -24.24 -0.15 -3.09 16 12 C 0.16 3.57 4.67 -62.80 -0.29 3.28 16 13 H 0.14 3.73 5.73 -51.93 -0.30 3.44 16 14 C -0.13 -2.69 6.45 -24.06 -0.16 -2.85 16 15 C -0.13 -2.34 6.46 -24.06 -0.16 -2.50 16 16 C 0.12 2.39 5.07 -62.55 -0.32 2.08 16 17 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 18 N -0.59 -13.77 2.99 -145.48 -0.44 -14.20 16 19 C -0.22 -5.56 10.56 -15.06 -0.16 -5.72 16 20 H 0.08 1.92 7.85 -52.48 -0.41 1.51 16 21 C -0.01 -0.22 5.47 -17.43 -0.10 -0.32 16 22 N -0.92 -25.50 10.64 55.49 0.59 -24.91 16 23 Si 0.91 21.10 29.56 -169.99 -5.03 16.07 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H 0.10 0.91 8.06 -52.48 -0.42 0.49 16 28 H 0.10 0.98 5.69 -52.49 -0.30 0.69 16 29 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 30 H 0.07 0.62 7.50 -51.93 -0.39 0.23 16 31 H 0.06 0.69 7.57 -51.92 -0.39 0.30 16 32 H 0.06 0.69 7.50 -51.93 -0.39 0.30 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.86 7.56 -51.93 -0.39 0.47 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.40 6.53 7.48 -40.82 -0.31 6.23 16 37 H 0.06 1.25 7.98 -51.93 -0.41 0.84 16 38 H 0.05 1.04 7.82 -51.93 -0.41 0.63 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.05 0.85 7.82 -51.93 -0.41 0.44 16 41 H 0.05 0.83 7.82 -51.93 -0.41 0.42 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 337.87 15.07 5.09 5.09 Total: -1.00 -29.30 337.87 -7.95 -37.25 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -6.98 Total: 9.13 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -1.03 Total: -5.24 kcal Atomic # 7 Polarization: -51.19 SS G_CDS: -0.10 Total: -51.28 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.30 -7.95 -37.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110897200.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.815 kcal (2) G-P(sol) polarization free energy of solvation -29.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds