Wall clock time and date at job start Tue Mar 31 2020 00:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99639 * 2 1 4 4 C 1.52998 * 109.47136 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.46830 * 120.00254 * 3 2 1 6 6 C 1.50702 * 109.46864 * 240.00017 * 3 2 1 7 7 O 1.21282 * 120.00180 * 0.02562 * 6 3 2 8 8 N 1.34773 * 119.99740 * 180.02562 * 6 3 2 9 9 C 1.46504 * 119.99715 * 179.97438 * 8 6 3 10 10 H 1.08997 * 110.56218 * 34.29847 * 9 8 6 11 11 C 1.54849 * 110.62700 * 271.39620 * 9 8 6 12 12 C 1.55843 * 103.44861 * 241.51222 * 11 9 8 13 13 H 1.09001 * 115.56123 * 158.81552 * 12 11 9 14 14 C 1.55850 * 105.06331 * 288.17569 * 12 11 9 15 15 C 1.55167 * 103.49909 * 71.74104 * 14 12 11 16 16 C 1.55847 * 103.41613 * 0.06196 * 15 14 12 17 17 H 1.08999 * 116.12568 * 159.23147 * 16 15 14 18 18 N 1.50236 * 101.05225 * 32.93656 * 12 11 9 19 19 C 1.36938 * 130.83705 * 126.00740 * 18 12 11 20 20 H 1.08008 * 119.99638 * 185.40230 * 19 18 12 21 21 C 1.38811 * 120.00153 * 5.41261 * 19 18 12 22 22 N 1.31613 * 119.99776 * 9.27748 * 21 19 18 23 23 Si 1.86802 * 119.99834 * 189.28826 * 21 19 18 24 24 H 1.48500 * 109.47157 * 94.04320 * 23 21 19 25 25 H 1.48500 * 109.46582 * 214.04154 * 23 21 19 26 26 H 1.48504 * 109.46964 * 334.04005 * 23 21 19 27 27 H 1.08006 * 120.00004 * 180.02562 * 1 2 3 28 28 H 1.07995 * 120.00301 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.99889 * 180.02562 * 2 1 3 30 30 H 1.08995 * 109.47176 * 60.00095 * 4 3 2 31 31 H 1.09009 * 109.46912 * 179.97438 * 4 3 2 32 32 H 1.08994 * 109.47128 * 299.99473 * 4 3 2 33 33 H 1.08996 * 109.47448 * 59.99812 * 5 3 2 34 34 H 1.08999 * 109.46997 * 179.97438 * 5 3 2 35 35 H 1.08995 * 109.47171 * 299.99714 * 5 3 2 36 36 H 0.97002 * 120.00530 * 359.97438 * 8 6 3 37 37 H 1.09002 * 110.62942 * 0.02562 * 11 9 8 38 38 H 1.09006 * 110.62852 * 123.01874 * 11 9 8 39 39 H 1.09003 * 110.62668 * 190.31091 * 14 12 11 40 40 H 1.09001 * 110.62629 * 313.33608 * 14 12 11 41 41 H 1.08991 * 110.56871 * 241.61312 * 15 14 12 42 42 H 1.09004 * 110.84229 * 118.63711 * 15 14 12 43 43 H 0.97001 * 119.99817 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 1.0691 2.4680 0.0006 5 6 2.9431 1.3862 1.2492 6 6 2.9298 1.3850 -1.2305 7 8 2.9346 0.4722 -2.0291 8 7 3.6993 2.4707 -1.4435 9 6 4.5420 2.5481 -2.6395 10 1 4.0551 2.0589 -3.4831 11 6 5.9304 1.9175 -2.3702 12 6 6.9158 3.1057 -2.5843 13 1 7.8918 2.9984 -2.1110 14 6 6.9227 3.3540 -4.1229 15 6 5.5310 3.9840 -4.3944 16 6 4.8739 4.0318 -2.9821 17 1 4.0530 4.7381 -2.8582 18 7 6.0810 4.2613 -2.1100 19 6 6.3377 5.2264 -1.1730 20 1 5.5687 5.9352 -0.9033 21 6 7.5862 5.2938 -0.5701 22 7 8.5766 4.5551 -1.0235 23 14 7.8604 6.4327 0.8850 24 1 7.6611 5.6783 2.1485 25 1 9.2451 6.9674 0.8408 26 1 6.8930 7.5576 0.8222 27 1 -0.5400 -0.9354 0.0004 28 1 -0.5400 0.9352 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 0.4429 2.4100 0.8908 31 1 1.6142 3.4120 0.0011 32 1 0.4422 2.4105 -0.8891 33 1 3.6514 0.5577 1.2492 34 1 3.4884 2.3299 1.2490 35 1 2.3165 1.3284 2.1392 36 1 3.6952 3.2010 -0.8051 37 1 5.9919 1.5468 -1.3470 38 1 6.1333 1.1173 -3.0820 39 1 7.7187 4.0467 -4.3965 40 1 7.0284 2.4132 -4.6631 41 1 4.9499 3.3534 -5.0672 42 1 5.6334 4.9888 -4.8044 43 1 9.4490 4.6019 -0.6019 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110897200.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:34 Heat of formation + Delta-G solvation = 3.841023 kcal Electronic energy + Delta-G solvation = -22960.897782 eV Core-core repulsion = 19813.853183 eV Total energy + Delta-G solvation = -3147.044599 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.50951 -40.23402 -37.21628 -35.31113 -34.38951 -31.83033 -30.95193 -30.37431 -29.16395 -28.29900 -26.12716 -25.03935 -23.06219 -21.58683 -21.42185 -20.40363 -19.36457 -18.81333 -17.86233 -17.40861 -16.77777 -16.32259 -16.01000 -15.62109 -15.46176 -15.00221 -14.88476 -14.37598 -13.78109 -13.65827 -13.39494 -13.28757 -13.08092 -12.92749 -12.82932 -12.76112 -12.68650 -12.67360 -12.13715 -12.07471 -11.93725 -11.90160 -11.71559 -11.64250 -11.23429 -10.95153 -10.80506 -10.64711 -10.22045 -9.92270 -8.85343 -7.77322 -5.13498 1.34701 1.50291 1.50834 1.59048 1.70286 2.43171 2.51863 3.37819 3.43853 3.63246 3.79650 3.99372 4.02497 4.08651 4.15473 4.26953 4.44957 4.47488 4.48183 4.62733 4.69014 4.69464 4.77099 4.81784 4.83886 4.86565 4.91933 5.06168 5.08902 5.15541 5.18637 5.22769 5.29922 5.37827 5.53359 5.61723 5.71930 5.73811 5.85614 5.89499 6.23294 6.68703 7.05012 7.32741 7.73110 8.60180 9.32701 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017830 B = 0.005938 C = 0.004924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.005669 B = 4714.440147 C = 5685.612270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.144 4.144 3 C -0.052 4.052 4 C -0.139 4.139 5 C -0.134 4.134 6 C 0.518 3.482 7 O -0.586 6.586 8 N -0.701 5.701 9 C 0.141 3.859 10 H 0.082 0.918 11 C -0.135 4.135 12 C 0.145 3.855 13 H 0.107 0.893 14 C -0.129 4.129 15 C -0.120 4.120 16 C 0.127 3.873 17 H 0.105 0.895 18 N -0.608 5.608 19 C -0.214 4.214 20 H 0.087 0.913 21 C -0.066 4.066 22 N -0.947 5.947 23 Si 0.971 3.029 24 H -0.292 1.292 25 H -0.304 1.304 26 H -0.267 1.267 27 H 0.111 0.889 28 H 0.118 0.882 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.406 0.594 37 H 0.035 0.965 38 H 0.063 0.937 39 H 0.036 0.964 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.586 -4.175 1.355 15.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.163 4.163 3 C -0.055 4.055 4 C -0.196 4.196 5 C -0.192 4.192 6 C 0.306 3.694 7 O -0.467 6.467 8 N -0.350 5.350 9 C 0.034 3.966 10 H 0.100 0.900 11 C -0.175 4.175 12 C 0.039 3.961 13 H 0.124 0.876 14 C -0.168 4.168 15 C -0.160 4.160 16 C 0.020 3.980 17 H 0.123 0.877 18 N -0.330 5.330 19 C -0.343 4.343 20 H 0.105 0.895 21 C -0.259 4.259 22 N -0.596 5.596 23 Si 0.801 3.199 24 H -0.220 1.220 25 H -0.231 1.231 26 H -0.192 1.192 27 H 0.129 0.871 28 H 0.136 0.864 29 H 0.115 0.885 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.241 0.759 37 H 0.054 0.946 38 H 0.082 0.918 39 H 0.055 0.945 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -14.405 -4.617 0.990 15.159 hybrid contribution 1.022 0.655 0.891 1.506 sum -13.383 -3.962 1.881 14.083 Atomic orbital electron populations 1.24156 0.95124 1.03437 0.99009 1.22484 0.96340 0.96134 1.01332 1.19910 0.95747 0.96935 0.92873 1.21954 0.98353 0.95580 1.03763 1.21805 0.99100 1.02165 0.96100 1.21038 0.79635 0.81296 0.87435 1.90622 1.68341 1.39028 1.48709 1.45985 1.43036 1.20702 1.25299 1.22396 0.89458 0.97634 0.87098 0.89985 1.23331 0.96665 0.98115 0.99404 1.23374 0.95810 0.85112 0.91842 0.87562 1.22972 0.96738 0.99305 0.97800 1.22871 0.96154 1.00422 0.96509 1.23437 0.90719 0.92993 0.90825 0.87733 1.46820 1.14779 1.28924 1.42489 1.19363 0.96545 1.06801 1.11577 0.89541 1.25418 0.95507 1.02118 1.02835 1.69845 1.01406 1.45326 1.43060 0.85159 0.76505 0.78583 0.79677 1.21952 1.23093 1.19188 0.87127 0.86378 0.88521 0.88908 0.91389 0.91861 0.93473 0.91921 0.89110 0.75863 0.94571 0.91795 0.94507 0.91334 0.90139 0.92292 0.94609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.38 13.70 67.78 0.93 -2.45 16 2 C -0.14 -3.45 8.00 25.65 0.21 -3.25 16 3 C -0.05 -1.26 0.84 -53.67 -0.05 -1.30 16 4 C -0.14 -2.58 7.02 71.98 0.51 -2.08 16 5 C -0.13 -3.08 8.35 71.98 0.60 -2.48 16 6 C 0.52 16.92 6.47 87.66 0.57 17.48 16 7 O -0.59 -23.38 15.72 -3.04 -0.05 -23.42 16 8 N -0.70 -22.97 4.87 -434.91 -2.12 -25.09 16 9 C 0.14 5.05 2.75 46.61 0.13 5.18 16 10 H 0.08 2.93 7.29 -2.39 -0.02 2.91 16 11 C -0.13 -5.48 6.23 32.21 0.20 -5.28 16 12 C 0.15 6.66 4.67 46.23 0.22 6.88 16 13 H 0.11 5.78 5.73 -2.39 -0.01 5.77 16 14 C -0.13 -5.08 6.45 32.32 0.21 -4.87 16 15 C -0.12 -4.12 6.46 32.32 0.21 -3.91 16 16 C 0.13 4.67 5.07 46.14 0.23 4.91 16 17 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 18 N -0.61 -28.21 2.99 -614.17 -1.84 -30.05 16 19 C -0.21 -10.95 10.56 84.03 0.89 -10.06 16 20 H 0.09 4.16 7.85 -2.91 -0.02 4.14 16 21 C -0.07 -3.54 5.47 84.86 0.46 -3.07 16 22 N -0.95 -54.50 10.64 21.65 0.23 -54.27 16 23 Si 0.97 43.80 29.56 68.60 2.03 45.83 16 24 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 25 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 27 H 0.11 1.75 8.06 -2.91 -0.02 1.72 16 28 H 0.12 1.81 5.69 -2.91 -0.02 1.80 16 29 H 0.10 2.55 8.06 -2.91 -0.02 2.53 16 30 H 0.09 1.29 7.50 -2.39 -0.02 1.27 16 31 H 0.07 1.23 7.57 -2.38 -0.02 1.22 16 32 H 0.06 1.18 7.50 -2.39 -0.02 1.16 16 33 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.06 1.50 7.56 -2.39 -0.02 1.48 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.41 12.67 7.48 -92.71 -0.69 11.98 16 37 H 0.04 1.59 7.98 -2.39 -0.02 1.57 16 38 H 0.06 2.43 7.82 -2.38 -0.02 2.41 16 39 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.07 2.37 7.82 -2.39 -0.02 2.35 16 41 H 0.08 2.32 7.82 -2.39 -0.02 2.30 16 42 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 43 H 0.24 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -64.05 337.87 3.86 -60.19 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: 0.30 Total: 31.11 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: 5.31 Total: -4.30 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -3.72 Total: -109.40 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.05 Total: -23.42 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -64.05 3.86 -60.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110897200.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.029 kcal (2) G-P(sol) polarization free energy of solvation -64.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds