Wall clock time and date at job start Tue Mar 31 2020 00:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47479 * 2 1 4 4 C 1.52996 * 109.47178 * 239.99841 * 2 1 3 5 5 C 1.50702 * 109.47107 * 120.00210 * 2 1 3 6 6 C 1.32997 * 120.00362 * 71.78509 * 5 2 1 7 7 C 1.47099 * 119.99609 * 351.98719 * 6 5 2 8 8 O 1.21618 * 120.00319 * 353.46941 * 7 6 5 9 9 N 1.34779 * 120.00041 * 173.47936 * 7 6 5 10 10 C 1.46496 * 120.00034 * 179.97438 * 9 7 6 11 11 C 1.52998 * 117.44143 * 224.23782 * 10 9 7 12 12 H 1.09006 * 119.54205 * 4.11699 * 11 10 9 13 13 C 1.54798 * 117.94093 * 160.75580 * 11 10 9 14 14 N 1.48142 * 104.41591 * 87.46160 * 13 11 10 15 15 C 1.36946 * 127.83529 * 140.36869 * 14 13 11 16 16 H 1.08002 * 119.99809 * 329.19004 * 15 14 13 17 17 C 1.38811 * 119.99873 * 149.18803 * 15 14 13 18 18 N 1.31619 * 120.00151 * 341.08457 * 17 15 14 19 19 Si 1.86796 * 119.99747 * 161.08750 * 17 15 14 20 20 H 1.48498 * 109.47359 * 60.00114 * 19 17 15 21 21 H 1.48501 * 109.47084 * 299.99869 * 19 17 15 22 22 H 1.48502 * 109.47026 * 180.02562 * 19 17 15 23 23 C 1.48142 * 104.32756 * 320.10763 * 14 13 11 24 24 C 1.53003 * 117.44516 * 154.99990 * 10 9 7 25 25 H 1.09004 * 119.53491 * 354.27621 * 24 10 9 26 26 H 1.09000 * 109.47021 * 335.40391 * 1 2 3 27 27 H 1.09002 * 109.47442 * 95.40338 * 1 2 3 28 28 H 1.09002 * 109.47387 * 215.40939 * 1 2 3 29 29 H 1.08997 * 109.47579 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47032 * 300.00261 * 3 2 1 31 31 H 1.09003 * 109.47103 * 60.00007 * 3 2 1 32 32 H 1.09006 * 109.47727 * 264.15929 * 4 2 1 33 33 H 1.08998 * 109.47103 * 24.15995 * 4 2 1 34 34 H 1.09004 * 109.47594 * 144.15905 * 4 2 1 35 35 H 1.08005 * 119.99903 * 251.78206 * 5 2 1 36 36 H 1.08000 * 120.00311 * 171.97848 * 6 5 2 37 37 H 0.97001 * 119.99983 * 359.97438 * 9 7 6 38 38 H 1.09004 * 115.52039 * 9.57874 * 10 9 7 39 39 H 1.09003 * 110.54006 * 328.72335 * 13 11 10 40 40 H 1.09003 * 110.45967 * 206.16340 * 13 11 10 41 41 H 0.97003 * 119.99948 * 358.72375 * 18 17 15 42 42 H 1.09005 * 110.40447 * 158.62965 * 23 14 13 43 43 H 1.08996 * 110.41083 * 281.06566 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2305 6 6 1.9145 -2.0314 1.3303 7 6 1.1403 -2.7787 0.3273 8 8 0.5103 -2.1806 -0.5239 9 7 1.1289 -4.1262 0.3517 10 6 0.3574 -4.8704 -0.6469 11 6 -0.4831 -6.0496 -0.1531 12 1 -0.5398 -6.2592 0.9151 13 6 -1.6295 -6.5544 -1.0626 14 7 -0.9825 -7.5417 -1.9577 15 6 -1.4847 -8.7409 -2.3882 16 1 -2.1619 -9.2998 -1.7593 17 6 -1.1234 -9.2379 -3.6329 18 7 -0.6205 -8.4311 -4.5431 19 14 -1.3511 -11.0519 -4.0161 20 1 -2.7873 -11.4079 -3.8908 21 1 -0.5547 -11.8634 -3.0608 22 1 -0.8915 -11.3267 -5.4013 23 6 0.3282 -6.9347 -2.2867 24 6 0.8059 -6.2985 -0.9636 25 1 1.7236 -6.6845 -0.5197 26 1 -0.3633 0.9344 0.4277 27 1 -0.3634 -0.0968 -1.0231 28 1 -0.3634 -0.8376 0.5954 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 2.2597 -1.7605 -1.0046 33 1 1.2770 -0.6846 -2.0268 34 1 2.9465 -0.2326 -1.6063 35 1 2.4880 -0.1469 2.0312 36 1 2.3874 -2.5555 2.1477 37 1 1.6315 -4.6033 1.0304 38 1 -0.0448 -4.2765 -1.4677 39 1 -2.0476 -5.7319 -1.6430 40 1 -2.4061 -7.0335 -0.4663 41 1 -0.5195 -7.4857 -4.3506 42 1 1.0302 -7.7012 -2.6151 43 1 0.2111 -6.1708 -3.0552 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114064641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:33 Heat of formation + Delta-G solvation = 58.266061 kcal Electronic energy + Delta-G solvation = -21928.455223 eV Core-core repulsion = 18783.770671 eV Total energy + Delta-G solvation = -3144.684552 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.57925 -38.91583 -36.77032 -34.52636 -32.92626 -31.66227 -30.00971 -27.38179 -27.27772 -27.17305 -25.56979 -23.83816 -21.58055 -20.72082 -20.30754 -19.43223 -18.43308 -17.44070 -16.99278 -16.30563 -15.38832 -14.92605 -14.59208 -14.03574 -13.96723 -13.81615 -13.65570 -13.51022 -13.09939 -12.78847 -12.41803 -12.28574 -12.13515 -11.80069 -11.54392 -11.31523 -10.94708 -10.86902 -10.75082 -10.69222 -10.58847 -10.55643 -10.09826 -10.04680 -9.59417 -9.54007 -9.39689 -9.19702 -8.54917 -8.30553 -6.90345 -6.15435 -3.31110 1.25719 3.18852 3.23366 3.47131 3.50158 3.68531 4.23105 4.49235 4.53555 4.61233 4.91473 5.00647 5.07226 5.24297 5.24445 5.26957 5.31902 5.45690 5.56104 5.65879 5.71495 5.80721 5.82106 5.86413 5.88162 5.93686 6.04376 6.08609 6.15877 6.26639 6.39170 6.40019 6.50246 6.57334 6.63226 6.75961 6.78317 6.93490 6.97308 7.60898 7.82635 8.32406 8.45866 8.94756 9.76106 10.42507 11.20934 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.041949 B = 0.003266 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.320712 B = 8572.051163 C = 8767.501923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.042 4.042 3 C -0.141 4.141 4 C -0.120 4.120 5 C -0.049 4.049 6 C -0.224 4.224 7 C 0.534 3.466 8 O -0.516 6.516 9 N -0.696 5.696 10 C 0.102 3.898 11 C -0.180 4.180 12 H 0.103 0.897 13 C 0.154 3.846 14 N -0.595 5.595 15 C -0.333 4.333 16 H 0.060 0.940 17 C -0.024 4.024 18 N -0.917 5.917 19 Si 1.078 2.922 20 H -0.291 1.291 21 H -0.292 1.292 22 H -0.284 1.284 23 C 0.166 3.834 24 C -0.179 4.179 25 H 0.105 0.895 26 H 0.031 0.969 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.030 0.970 35 H 0.123 0.877 36 H 0.126 0.874 37 H 0.397 0.603 38 H 0.131 0.869 39 H 0.027 0.973 40 H 0.053 0.947 41 H 0.270 0.730 42 H 0.062 0.938 43 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.119 15.501 12.956 21.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.042 4.042 3 C -0.199 4.199 4 C -0.177 4.177 5 C -0.069 4.069 6 C -0.244 4.244 7 C 0.324 3.676 8 O -0.394 6.394 9 N -0.344 5.344 10 C -0.004 4.004 11 C -0.201 4.201 12 H 0.121 0.879 13 C 0.027 3.973 14 N -0.320 5.320 15 C -0.461 4.461 16 H 0.078 0.922 17 C -0.226 4.226 18 N -0.557 5.557 19 Si 0.907 3.093 20 H -0.218 1.218 21 H -0.219 1.219 22 H -0.209 1.209 23 C 0.039 3.961 24 C -0.200 4.200 25 H 0.123 0.877 26 H 0.050 0.950 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.231 0.769 38 H 0.149 0.851 39 H 0.044 0.956 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 6.799 14.602 11.097 19.560 hybrid contribution 0.191 0.818 1.899 2.076 sum 6.990 15.420 12.996 21.343 Atomic orbital electron populations 1.21874 0.92379 0.99459 1.02895 1.19714 0.97001 0.94199 0.93282 1.22019 1.00582 0.95486 1.01790 1.22225 0.99182 1.00185 0.96113 1.23877 0.91967 0.94349 0.96709 1.22565 1.04694 0.95627 1.01555 1.18442 0.82328 0.81725 0.85136 1.90940 1.43801 1.67140 1.37544 1.45331 1.50344 1.06076 1.32673 1.21773 0.97397 0.87625 0.93650 1.24457 0.95219 1.01446 0.98985 0.87861 1.21234 0.92288 0.92134 0.91606 1.45191 1.11958 1.18520 1.56300 1.19696 1.30815 0.94808 1.00801 0.92244 1.26133 0.99166 1.06611 0.90713 1.70771 1.45649 1.06104 1.33171 0.83326 0.76016 0.73945 0.76007 1.21786 1.21923 1.20921 1.21162 0.88741 0.95346 0.90813 1.24376 0.97941 0.96164 1.01545 0.87740 0.94993 0.91988 0.91904 0.92848 0.92310 0.92836 0.91827 0.91859 0.95129 0.85900 0.85657 0.76892 0.85094 0.95567 0.92880 0.91824 0.91919 0.95289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 7.62 37.15 0.28 -1.02 16 2 C -0.04 -0.44 0.75 -155.67 -0.12 -0.56 16 3 C -0.14 -1.19 8.00 37.16 0.30 -0.89 16 4 C -0.12 -1.49 7.56 37.16 0.28 -1.21 16 5 C -0.05 -0.45 8.49 -36.12 -0.31 -0.76 16 6 C -0.22 -2.19 9.48 -37.81 -0.36 -2.55 16 7 C 0.53 6.98 5.79 -12.66 -0.07 6.91 16 8 O -0.52 -8.00 8.16 5.26 0.04 -7.96 16 9 N -0.70 -9.00 5.56 -54.99 -0.31 -9.31 16 10 C 0.10 1.67 5.97 -67.93 -0.41 1.27 16 11 C -0.18 -3.21 7.08 -89.00 -0.63 -3.84 16 12 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 13 C 0.15 3.34 7.06 -2.19 -0.02 3.33 16 14 N -0.60 -15.44 3.13 -168.61 -0.53 -15.96 16 15 C -0.33 -9.54 10.20 -15.06 -0.15 -9.69 16 16 H 0.06 1.69 7.90 -52.49 -0.41 1.28 16 17 C -0.02 -0.68 5.25 -17.43 -0.09 -0.77 16 18 N -0.92 -28.06 13.20 55.49 0.73 -27.33 16 19 Si 1.08 25.41 29.96 -169.99 -5.09 20.31 16 20 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.17 3.88 5.01 -2.41 -0.01 3.87 16 24 C -0.18 -3.28 7.06 -89.22 -0.63 -3.91 16 25 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 26 H 0.03 0.33 7.75 -51.93 -0.40 -0.07 16 27 H 0.06 0.83 6.94 -51.93 -0.36 0.47 16 28 H 0.06 0.84 5.86 -51.93 -0.30 0.54 16 29 H 0.05 0.41 8.12 -51.93 -0.42 -0.01 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.39 8.12 -51.93 -0.42 -0.03 16 32 H 0.06 0.87 4.55 -51.93 -0.24 0.64 16 33 H 0.06 0.88 6.87 -51.93 -0.36 0.52 16 34 H 0.03 0.34 7.74 -51.93 -0.40 -0.06 16 35 H 0.12 0.81 8.01 -52.48 -0.42 0.39 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.40 4.09 8.81 -40.82 -0.36 3.73 16 38 H 0.13 2.44 7.40 -51.93 -0.38 2.06 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.27 8.29 6.06 -40.82 -0.25 8.05 16 42 H 0.06 1.59 7.92 -51.93 -0.41 1.18 16 43 H 0.03 0.71 7.47 -51.93 -0.39 0.33 16 LS Contribution 334.90 15.07 5.05 5.05 Total: -1.00 -31.87 334.90 -8.90 -40.77 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.86 Total: 4.26 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -1.93 Total: -9.83 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -0.10 Total: -52.60 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.04 Total: -7.96 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -5.09 Total: 20.31 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.87 -8.90 -40.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114064641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.032 kcal (2) G-P(sol) polarization free energy of solvation -31.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds