Wall clock time and date at job start Tue Mar 31 2020 00:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47479 * 2 1 4 4 C 1.52996 * 109.47178 * 239.99841 * 2 1 3 5 5 C 1.50702 * 109.47107 * 120.00210 * 2 1 3 6 6 C 1.32997 * 120.00362 * 71.78509 * 5 2 1 7 7 C 1.47099 * 119.99609 * 351.98719 * 6 5 2 8 8 O 1.21618 * 120.00319 * 353.46941 * 7 6 5 9 9 N 1.34779 * 120.00041 * 173.47936 * 7 6 5 10 10 C 1.46496 * 120.00034 * 179.97438 * 9 7 6 11 11 C 1.52998 * 117.44143 * 224.23782 * 10 9 7 12 12 H 1.09006 * 119.54205 * 4.11699 * 11 10 9 13 13 C 1.54798 * 117.94093 * 160.75580 * 11 10 9 14 14 N 1.48142 * 104.41591 * 87.46160 * 13 11 10 15 15 C 1.36946 * 127.83529 * 140.36869 * 14 13 11 16 16 H 1.08002 * 119.99809 * 329.19004 * 15 14 13 17 17 C 1.38811 * 119.99873 * 149.18803 * 15 14 13 18 18 N 1.31619 * 120.00151 * 341.08457 * 17 15 14 19 19 Si 1.86796 * 119.99747 * 161.08750 * 17 15 14 20 20 H 1.48498 * 109.47359 * 60.00114 * 19 17 15 21 21 H 1.48501 * 109.47084 * 299.99869 * 19 17 15 22 22 H 1.48502 * 109.47026 * 180.02562 * 19 17 15 23 23 C 1.48142 * 104.32756 * 320.10763 * 14 13 11 24 24 C 1.53003 * 117.44516 * 154.99990 * 10 9 7 25 25 H 1.09004 * 119.53491 * 354.27621 * 24 10 9 26 26 H 1.09000 * 109.47021 * 335.40391 * 1 2 3 27 27 H 1.09002 * 109.47442 * 95.40338 * 1 2 3 28 28 H 1.09002 * 109.47387 * 215.40939 * 1 2 3 29 29 H 1.08997 * 109.47579 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47032 * 300.00261 * 3 2 1 31 31 H 1.09003 * 109.47103 * 60.00007 * 3 2 1 32 32 H 1.09006 * 109.47727 * 264.15929 * 4 2 1 33 33 H 1.08998 * 109.47103 * 24.15995 * 4 2 1 34 34 H 1.09004 * 109.47594 * 144.15905 * 4 2 1 35 35 H 1.08005 * 119.99903 * 251.78206 * 5 2 1 36 36 H 1.08000 * 120.00311 * 171.97848 * 6 5 2 37 37 H 0.97001 * 119.99983 * 359.97438 * 9 7 6 38 38 H 1.09004 * 115.52039 * 9.57874 * 10 9 7 39 39 H 1.09003 * 110.54006 * 328.72335 * 13 11 10 40 40 H 1.09003 * 110.45967 * 206.16340 * 13 11 10 41 41 H 0.97003 * 119.99948 * 358.72375 * 18 17 15 42 42 H 1.09005 * 110.40447 * 158.62965 * 23 14 13 43 43 H 1.08996 * 110.41083 * 281.06566 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2305 6 6 1.9145 -2.0314 1.3303 7 6 1.1403 -2.7787 0.3273 8 8 0.5103 -2.1806 -0.5239 9 7 1.1289 -4.1262 0.3517 10 6 0.3574 -4.8704 -0.6469 11 6 -0.4831 -6.0496 -0.1531 12 1 -0.5398 -6.2592 0.9151 13 6 -1.6295 -6.5544 -1.0626 14 7 -0.9825 -7.5417 -1.9577 15 6 -1.4847 -8.7409 -2.3882 16 1 -2.1619 -9.2998 -1.7593 17 6 -1.1234 -9.2379 -3.6329 18 7 -0.6205 -8.4311 -4.5431 19 14 -1.3511 -11.0519 -4.0161 20 1 -2.7873 -11.4079 -3.8908 21 1 -0.5547 -11.8634 -3.0608 22 1 -0.8915 -11.3267 -5.4013 23 6 0.3282 -6.9347 -2.2867 24 6 0.8059 -6.2985 -0.9636 25 1 1.7236 -6.6845 -0.5197 26 1 -0.3633 0.9344 0.4277 27 1 -0.3634 -0.0968 -1.0231 28 1 -0.3634 -0.8376 0.5954 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 2.2597 -1.7605 -1.0046 33 1 1.2770 -0.6846 -2.0268 34 1 2.9465 -0.2326 -1.6063 35 1 2.4880 -0.1469 2.0312 36 1 2.3874 -2.5555 2.1477 37 1 1.6315 -4.6033 1.0304 38 1 -0.0448 -4.2765 -1.4677 39 1 -2.0476 -5.7319 -1.6430 40 1 -2.4061 -7.0335 -0.4663 41 1 -0.5195 -7.4857 -4.3506 42 1 1.0302 -7.7012 -2.6151 43 1 0.2111 -6.1708 -3.0552 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114064641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:32 Heat of formation + Delta-G solvation = 38.468850 kcal Electronic energy + Delta-G solvation = -21929.313695 eV Core-core repulsion = 18783.770671 eV Total energy + Delta-G solvation = -3145.543024 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.64192 -40.42510 -37.79926 -36.13728 -34.46044 -32.73334 -31.66862 -29.18814 -28.16160 -28.05607 -27.47970 -25.02859 -23.14001 -21.97546 -21.64662 -21.03494 -19.54024 -19.42070 -17.97643 -17.52356 -16.45937 -16.19017 -15.98016 -15.69880 -15.38312 -15.15279 -14.96981 -14.84264 -14.43504 -14.02700 -13.68549 -13.58162 -13.23310 -13.10108 -12.95510 -12.65393 -12.54341 -12.41087 -12.17509 -11.91000 -11.79872 -11.78411 -11.59503 -11.55436 -11.38489 -10.87279 -10.65488 -10.47781 -10.25404 -9.58752 -9.04648 -8.41504 -5.55960 0.45819 1.55921 1.65003 1.83852 2.05696 2.23152 2.59843 2.80711 3.20217 3.43794 3.69826 3.70126 3.79511 3.86315 4.00260 4.06129 4.21085 4.24352 4.29792 4.46185 4.62858 4.67555 4.76084 4.78503 4.83191 4.83731 4.93278 4.93815 4.97731 5.14596 5.19618 5.21037 5.24127 5.27585 5.34840 5.50169 5.54263 5.56219 5.65953 5.73844 6.24649 6.63217 6.76544 7.33465 7.58782 8.29181 8.93602 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.041949 B = 0.003266 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.320712 B = 8572.051163 C = 8767.501923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.047 4.047 3 C -0.137 4.137 4 C -0.116 4.116 5 C -0.041 4.041 6 C -0.227 4.227 7 C 0.525 3.475 8 O -0.547 6.547 9 N -0.685 5.685 10 C 0.128 3.872 11 C -0.166 4.166 12 H 0.135 0.865 13 C 0.147 3.853 14 N -0.620 5.620 15 C -0.345 4.345 16 H 0.059 0.941 17 C -0.077 4.077 18 N -0.947 5.947 19 Si 1.130 2.870 20 H -0.271 1.271 21 H -0.274 1.274 22 H -0.290 1.290 23 C 0.169 3.831 24 C -0.175 4.175 25 H 0.132 0.868 26 H 0.048 0.952 27 H 0.035 0.965 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.035 0.965 34 H 0.041 0.959 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.415 0.585 38 H 0.104 0.896 39 H 0.013 0.987 40 H 0.058 0.942 41 H 0.254 0.746 42 H 0.035 0.965 43 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.475 16.173 16.142 24.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.047 4.047 3 C -0.194 4.194 4 C -0.174 4.174 5 C -0.060 4.060 6 C -0.247 4.247 7 C 0.317 3.683 8 O -0.427 6.427 9 N -0.335 5.335 10 C 0.020 3.980 11 C -0.187 4.187 12 H 0.153 0.847 13 C 0.021 3.979 14 N -0.346 5.346 15 C -0.473 4.473 16 H 0.077 0.923 17 C -0.273 4.273 18 N -0.589 5.589 19 Si 0.952 3.048 20 H -0.197 1.197 21 H -0.200 1.200 22 H -0.216 1.216 23 C 0.043 3.957 24 C -0.196 4.196 25 H 0.150 0.850 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.179 0.821 36 H 0.179 0.821 37 H 0.252 0.748 38 H 0.122 0.878 39 H 0.031 0.969 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 8.165 15.303 14.345 22.508 hybrid contribution -0.293 0.731 0.869 1.173 sum 7.873 16.034 15.214 23.463 Atomic orbital electron populations 1.21782 0.93788 0.99501 1.00994 1.19741 0.95888 0.95774 0.93309 1.21981 1.01329 0.93745 1.02367 1.22157 0.98801 0.99757 0.96639 1.24153 0.91016 0.94290 0.96535 1.22674 1.04835 0.95735 1.01466 1.19182 0.82159 0.81569 0.85384 1.90959 1.45137 1.67672 1.38974 1.45162 1.50073 1.06116 1.32179 1.21251 0.96505 0.86646 0.93617 1.24320 0.92782 1.02052 0.99545 0.84711 1.21333 0.93910 0.91074 0.91558 1.45486 1.13512 1.18792 1.56799 1.20025 1.30545 0.95834 1.00919 0.92310 1.27683 0.98649 1.10278 0.90701 1.70898 1.48195 1.05540 1.34241 0.82677 0.77236 0.69182 0.75715 1.19686 1.19961 1.21576 1.20962 0.87620 0.94081 0.93022 1.24131 0.99171 0.97756 0.98562 0.84998 0.93347 0.94618 0.93564 0.91595 0.92978 0.91107 0.93302 0.94586 0.94041 0.82076 0.82110 0.74760 0.87813 0.96892 0.92399 0.93531 0.94689 0.97721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.43 7.62 71.98 0.55 -1.88 16 2 C -0.05 -0.91 0.75 -52.93 -0.04 -0.95 16 3 C -0.14 -1.93 8.00 71.98 0.58 -1.35 16 4 C -0.12 -2.88 7.56 71.98 0.54 -2.33 16 5 C -0.04 -0.59 8.49 24.52 0.21 -0.39 16 6 C -0.23 -3.63 9.48 23.43 0.22 -3.41 16 7 C 0.53 12.91 5.79 86.57 0.50 13.41 16 8 O -0.55 -17.15 8.16 -4.09 -0.03 -17.18 16 9 N -0.69 -16.24 5.56 -446.13 -2.48 -18.72 16 10 C 0.13 4.12 5.97 44.99 0.27 4.39 16 11 C -0.17 -5.70 7.08 -9.75 -0.07 -5.77 16 12 H 0.14 3.86 8.14 -2.38 -0.02 3.84 16 13 C 0.15 6.48 7.06 86.68 0.61 7.09 16 14 N -0.62 -33.14 3.13 -687.35 -2.15 -35.29 16 15 C -0.34 -20.17 10.20 84.03 0.86 -19.31 16 16 H 0.06 3.37 7.90 -2.91 -0.02 3.35 16 17 C -0.08 -4.54 5.25 84.86 0.45 -4.10 16 18 N -0.95 -60.22 13.20 21.65 0.29 -59.94 16 19 Si 1.13 51.61 29.96 68.60 2.06 53.66 16 20 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 22 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 23 C 0.17 8.27 5.01 86.54 0.43 8.71 16 24 C -0.18 -6.32 7.06 -9.89 -0.07 -6.39 16 25 H 0.13 4.07 8.14 -2.38 -0.02 4.05 16 26 H 0.05 0.94 7.75 -2.39 -0.02 0.92 16 27 H 0.03 1.00 6.94 -2.39 -0.02 0.98 16 28 H 0.05 1.22 5.86 -2.39 -0.01 1.21 16 29 H 0.07 0.78 8.12 -2.39 -0.02 0.76 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.77 8.12 -2.39 -0.02 0.75 16 32 H 0.05 1.33 4.55 -2.38 -0.01 1.32 16 33 H 0.03 1.05 6.87 -2.39 -0.02 1.04 16 34 H 0.04 0.89 7.74 -2.38 -0.02 0.87 16 35 H 0.16 1.20 8.01 -2.91 -0.02 1.17 16 36 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 37 H 0.42 7.01 8.81 -92.71 -0.82 6.19 16 38 H 0.10 4.02 7.40 -2.38 -0.02 4.00 16 39 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.25 16.53 6.06 -92.71 -0.56 15.97 16 42 H 0.03 1.86 7.92 -2.38 -0.02 1.84 16 43 H 0.01 0.26 7.47 -2.39 -0.02 0.25 16 Total: -1.00 -73.48 334.90 3.10 -70.38 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 0.39 Total: 19.39 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: 5.04 Total: -12.29 kcal Atomic # 7 Polarization: -109.61 SS G_CDS: -4.35 Total: -113.95 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.03 Total: -17.18 kcal Atomic # 14 Polarization: 51.61 SS G_CDS: 2.06 Total: 53.66 kcal Total: -73.48 3.10 -70.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114064641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.851 kcal (2) G-P(sol) polarization free energy of solvation -73.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds