Wall clock time and date at job start Tue Mar 31 2020 00:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50694 * 119.99866 * 2 1 4 4 C 1.31005 * 119.99736 * 180.02562 * 2 1 3 5 5 C 1.50699 * 119.99701 * 185.35435 * 4 2 1 6 6 C 1.50697 * 120.00069 * 5.34763 * 4 2 1 7 7 C 1.50696 * 109.47110 * 94.28698 * 6 4 2 8 8 O 1.21287 * 119.99814 * 359.97438 * 7 6 4 9 9 N 1.34774 * 120.00637 * 179.97438 * 7 6 4 10 10 C 1.46495 * 120.00398 * 179.97438 * 9 7 6 11 11 H 1.08991 * 115.51637 * 350.41755 * 10 9 7 12 12 C 1.53005 * 117.44180 * 205.00048 * 10 9 7 13 13 H 1.09000 * 119.53923 * 5.71752 * 12 10 9 14 14 C 1.54390 * 118.12093 * 160.81182 * 12 10 9 15 15 N 1.48144 * 104.61888 * 87.19102 * 14 12 10 16 16 C 1.36936 * 127.83828 * 140.41386 * 15 14 12 17 17 H 1.08002 * 119.99861 * 195.69124 * 16 15 14 18 18 C 1.38815 * 119.99865 * 15.68852 * 16 15 14 19 19 N 1.31613 * 119.99993 * 9.11527 * 18 16 15 20 20 Si 1.86806 * 119.99843 * 189.11335 * 18 16 15 21 21 H 1.48498 * 109.46944 * 59.99829 * 20 18 16 22 22 H 1.48500 * 109.46871 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46941 * 300.00020 * 20 18 16 24 24 C 1.48146 * 104.32368 * 320.41723 * 15 14 12 25 25 C 1.53008 * 117.43973 * 135.76408 * 10 9 7 26 26 H 1.09000 * 119.53808 * 355.88208 * 25 10 9 27 27 H 1.08991 * 109.46939 * 356.21876 * 1 2 3 28 28 H 1.09000 * 109.46975 * 236.21751 * 1 2 3 29 29 H 1.09004 * 109.47076 * 116.22359 * 1 2 3 30 30 H 1.08997 * 109.47065 * 359.97438 * 3 2 1 31 31 H 1.08992 * 109.47154 * 120.00363 * 3 2 1 32 32 H 1.09006 * 109.46550 * 240.00052 * 3 2 1 33 33 H 1.08998 * 109.47251 * 89.99265 * 5 4 2 34 34 H 1.09000 * 109.47183 * 209.99562 * 5 4 2 35 35 H 1.08999 * 109.47098 * 329.99678 * 5 4 2 36 36 H 1.09004 * 109.46610 * 214.28262 * 6 4 2 37 37 H 1.08999 * 109.47496 * 334.28248 * 6 4 2 38 38 H 0.97008 * 119.99362 * 359.97438 * 9 7 6 39 39 H 1.08997 * 110.40485 * 205.97572 * 14 12 10 40 40 H 1.08997 * 110.40548 * 328.40662 * 14 12 10 41 41 H 0.97006 * 119.99938 * 180.02562 * 19 18 16 42 42 H 1.08996 * 110.40839 * 158.37438 * 24 15 14 43 43 H 1.09005 * 110.40296 * 280.67852 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1346 -0.0005 5 6 3.6640 -1.1375 0.1213 6 6 1.4134 -2.4367 -0.1227 7 6 1.3700 -2.8573 -1.5691 8 8 1.8949 -2.1673 -2.4173 9 7 0.7480 -4.0002 -1.9203 10 6 0.7053 -4.4088 -3.3265 11 1 1.0521 -3.6639 -4.0426 12 6 -0.4417 -5.3238 -3.7605 13 1 -1.2335 -5.5659 -3.0517 14 6 -0.7783 -5.4050 -5.2650 15 7 0.1135 -6.4646 -5.7910 16 6 -0.1826 -7.4282 -6.7178 17 1 0.4633 -8.2865 -6.8295 18 6 -1.3129 -7.3017 -7.5137 19 7 -1.9998 -6.1790 -7.5075 20 14 -1.8589 -8.7249 -8.5935 21 1 -2.1488 -9.9079 -7.7439 22 1 -3.0833 -8.3387 -9.3397 23 1 -0.7782 -9.0593 -9.5556 24 6 1.3983 -6.2452 -5.0868 25 6 0.9935 -5.8778 -3.6430 26 1 1.2846 -6.5536 -2.8389 27 1 -0.3633 1.0254 0.0678 28 1 -0.3633 -0.5714 0.8542 29 1 -0.3633 -0.4541 -0.9219 30 1 1.5521 2.1335 -0.0005 31 1 2.8871 1.3628 0.8899 32 1 2.8871 1.3627 -0.8901 33 1 3.9432 -1.1864 1.1738 34 1 4.0694 -2.0030 -0.4028 35 1 4.0660 -0.2250 -0.3191 36 1 1.9200 -3.2034 0.4636 37 1 0.3968 -2.3077 0.2488 38 1 0.3285 -4.5523 -1.2419 39 1 -1.8228 -5.6827 -5.4063 40 1 -0.5676 -4.4537 -5.7535 41 1 -2.7898 -6.0908 -8.0634 42 1 1.9960 -7.1566 -5.0938 43 1 1.9500 -5.4264 -5.5489 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114704038.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:40 Heat of formation + Delta-G solvation = 5.209851 kcal Electronic energy + Delta-G solvation = -21388.556782 eV Core-core repulsion = 18241.571540 eV Total energy + Delta-G solvation = -3146.985242 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.19204 -39.98158 -37.94416 -36.03892 -34.34335 -32.43545 -31.68310 -30.32956 -28.94781 -27.89893 -27.18955 -24.87621 -23.51273 -21.94754 -21.54652 -20.90668 -18.89275 -18.16887 -17.97741 -17.27096 -16.74004 -16.58940 -15.75433 -15.44812 -15.38479 -15.03439 -14.90741 -14.66179 -14.41638 -13.76433 -13.59371 -13.36339 -13.30348 -13.19437 -13.00082 -12.92762 -12.85225 -12.68381 -12.61409 -12.18548 -12.11724 -12.06441 -11.87388 -11.66418 -11.59370 -11.00955 -10.83536 -10.69711 -9.68979 -9.33308 -8.94267 -7.92991 -5.30387 1.14831 1.46359 1.49852 1.56635 1.60345 2.15094 2.48356 2.84617 3.27798 3.58951 3.74209 3.82369 3.92072 3.98368 4.06952 4.13471 4.22384 4.36805 4.44371 4.51068 4.57598 4.65715 4.73925 4.81393 4.83722 4.87427 4.92965 4.96806 5.02261 5.07889 5.12610 5.16174 5.23180 5.26687 5.40574 5.44124 5.55330 5.62471 5.78706 6.12153 6.14851 6.58631 6.98465 7.29661 7.65460 8.44184 9.20845 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.041462 B = 0.003016 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.159908 B = 9282.064632 C = 9547.884031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.137 4.137 3 C -0.113 4.113 4 C -0.137 4.137 5 C -0.111 4.111 6 C -0.096 4.096 7 C 0.515 3.485 8 O -0.580 6.580 9 N -0.686 5.686 10 C 0.117 3.883 11 H 0.099 0.901 12 C -0.179 4.179 13 H 0.129 0.871 14 C 0.189 3.811 15 N -0.617 5.617 16 C -0.245 4.245 17 H 0.083 0.917 18 C -0.063 4.063 19 N -0.949 5.949 20 Si 0.984 3.016 21 H -0.274 1.274 22 H -0.294 1.294 23 H -0.276 1.276 24 C 0.148 3.852 25 C -0.165 4.165 26 H 0.137 0.863 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.419 0.581 39 H 0.060 0.940 40 H -0.008 1.008 41 H 0.251 0.749 42 H 0.064 0.936 43 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.139 8.684 21.594 24.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.137 4.137 3 C -0.169 4.169 4 C -0.137 4.137 5 C -0.168 4.168 6 C -0.135 4.135 7 C 0.304 3.696 8 O -0.459 6.459 9 N -0.337 5.337 10 C 0.009 3.991 11 H 0.117 0.883 12 C -0.200 4.200 13 H 0.147 0.853 14 C 0.063 3.937 15 N -0.341 5.341 16 C -0.373 4.373 17 H 0.101 0.899 18 C -0.256 4.256 19 N -0.596 5.596 20 Si 0.811 3.189 21 H -0.200 1.200 22 H -0.220 1.220 23 H -0.201 1.201 24 C 0.022 3.978 25 C -0.187 4.187 26 H 0.155 0.845 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.143 0.857 37 H 0.140 0.860 38 H 0.256 0.744 39 H 0.078 0.922 40 H 0.010 0.990 41 H 0.060 0.940 42 H 0.082 0.918 43 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 6.362 9.105 20.805 23.585 hybrid contribution -0.651 -0.779 -0.985 1.414 sum 5.711 8.327 19.820 22.244 Atomic orbital electron populations 1.20897 0.91863 1.03112 1.01623 1.21689 0.96252 0.95215 1.00514 1.20839 0.99967 0.94211 1.01922 1.20978 0.96055 0.93337 1.03357 1.20772 0.91786 1.02038 1.02170 1.20714 1.04138 0.97675 0.91007 1.21325 0.76534 0.79585 0.92179 1.90703 1.46891 1.54287 1.53978 1.45244 1.56953 1.24435 1.07024 1.21319 1.01254 0.91999 0.84483 0.88296 1.24330 0.92488 1.04529 0.98609 0.85332 1.20789 0.95927 0.89339 0.87689 1.45478 1.07936 1.34048 1.46628 1.19380 1.08524 0.98622 1.10777 0.89909 1.25798 0.99678 0.99770 1.00394 1.70099 1.19965 1.25954 1.43598 0.85086 0.77175 0.78394 0.78242 1.19951 1.21968 1.20133 1.21248 0.88528 0.98226 0.89798 1.24270 0.99356 0.96275 0.98755 0.84548 0.91240 0.89725 0.93490 0.91441 0.90431 0.92555 0.89726 0.93338 0.92093 0.85673 0.86029 0.74396 0.92204 0.98968 0.94042 0.91785 0.96699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.96 8.67 71.24 0.62 -1.34 16 2 C -0.14 -2.59 6.05 -16.49 -0.10 -2.69 16 3 C -0.11 -1.83 8.67 71.23 0.62 -1.21 16 4 C -0.14 -2.65 4.54 -16.49 -0.07 -2.73 16 5 C -0.11 -1.98 9.55 71.24 0.68 -1.30 16 6 C -0.10 -1.60 5.50 29.10 0.16 -1.44 16 7 C 0.51 13.48 7.82 87.66 0.69 14.17 16 8 O -0.58 -21.22 15.60 -3.05 -0.05 -21.26 16 9 N -0.69 -16.67 5.56 -442.53 -2.46 -19.13 16 10 C 0.12 3.91 5.98 45.00 0.27 4.18 16 11 H 0.10 4.02 7.40 -2.39 -0.02 4.01 16 12 C -0.18 -6.63 7.06 -9.88 -0.07 -6.70 16 13 H 0.13 4.12 8.14 -2.39 -0.02 4.10 16 14 C 0.19 9.51 5.70 86.54 0.49 10.01 16 15 N -0.62 -32.64 3.38 -688.16 -2.33 -34.96 16 16 C -0.24 -13.89 10.35 84.03 0.87 -13.02 16 17 H 0.08 4.46 7.85 -2.91 -0.02 4.44 16 18 C -0.06 -3.60 5.40 84.86 0.46 -3.14 16 19 N -0.95 -57.79 10.87 21.65 0.24 -57.56 16 20 Si 0.98 45.62 29.56 68.60 2.03 47.65 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 22 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 24 C 0.15 6.35 7.04 86.53 0.61 6.96 16 25 C -0.17 -5.68 7.06 -9.88 -0.07 -5.75 16 26 H 0.14 3.82 8.14 -2.39 -0.02 3.80 16 27 H 0.07 1.00 7.70 -2.39 -0.02 0.99 16 28 H 0.08 1.04 7.39 -2.39 -0.02 1.02 16 29 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 30 H 0.07 0.95 7.70 -2.39 -0.02 0.93 16 31 H 0.08 1.01 8.00 -2.39 -0.02 0.99 16 32 H 0.06 1.05 7.56 -2.38 -0.02 1.03 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.05 0.97 8.12 -2.39 -0.02 0.95 16 35 H 0.06 1.12 6.45 -2.39 -0.02 1.10 16 36 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.12 1.50 6.21 -2.39 -0.01 1.48 16 38 H 0.42 6.89 8.83 -92.70 -0.82 6.08 16 39 H 0.06 3.36 6.52 -2.39 -0.02 3.35 16 40 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 41 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 42 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 43 H 0.02 0.68 8.14 -2.38 -0.02 0.66 16 Total: -1.00 -73.61 348.81 2.75 -70.86 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.18 Total: 18.40 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 5.15 Total: -4.00 kcal Atomic # 7 Polarization: -107.09 SS G_CDS: -4.55 Total: -111.65 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.05 Total: -21.26 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -73.61 2.75 -70.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114704038.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.069 kcal (2) G-P(sol) polarization free energy of solvation -73.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds